Query         034729
Match_columns 85
No_of_seqs    127 out of 493
Neff          5.7 
Searched_HMMs 46136
Date          Fri Mar 29 05:51:40 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034729hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG2940 Predicted methyltransf  99.9 1.4E-26   3E-31  172.6   7.0   78    1-78    247-324 (325)
  2 PRK10258 biotin biosynthesis p  98.5 1.1E-07 2.4E-12   68.1   4.8   46    1-50    204-250 (251)
  3 TIGR02072 BioC biotin biosynth  97.8 4.8E-05   1E-09   52.7   5.2   35   14-50    206-240 (240)
  4 PRK01683 trans-aconitate 2-met  53.9      32 0.00069   24.4   4.5   38   14-51    215-257 (258)
  5 PF06883 RNA_pol_Rpa2_4:  RNA p  52.9      30 0.00064   20.3   3.5   34   15-49      5-39  (58)
  6 PRK08317 hypothetical protein;  47.4      65  0.0014   21.7   5.1   37   13-51    205-241 (241)
  7 PF13269 DUF4060:  Protein of u  37.2      74  0.0016   19.8   3.7   35   12-46      8-42  (73)
  8 PF09373 PMBR:  Pseudomurein-bi  36.8      36 0.00077   17.5   1.9   28   12-40      3-30  (33)
  9 PRK14103 trans-aconitate 2-met  32.4   1E+02  0.0022   21.9   4.4   38   14-51    212-254 (255)
 10 COG3607 Predicted lactoylgluta  31.4      29 0.00063   23.9   1.3   19   26-47    110-128 (133)
 11 cd01611 GABARAP Ubiquitin doma  31.2      49  0.0011   21.7   2.3   21   20-41     85-105 (112)
 12 PF02991 Atg8:  Autophagy prote  31.1      48   0.001   21.5   2.3   20   21-41     78-97  (104)
 13 PF00446 GnRH:  Gonadotropin-re  29.3      20 0.00044   14.3   0.1    7   45-51      3-9   (10)
 14 PF02905 EBV-NA1:  Epstein Barr  24.7      52  0.0011   22.9   1.6   28   33-61     69-96  (146)
 15 COG1647 Esterase/lipase [Gener  24.0      91   0.002   23.6   2.9   30   14-50     64-93  (243)
 16 COG1932 SerC Phosphoserine ami  23.4      90  0.0019   24.9   2.9   32   14-50     47-78  (365)
 17 PF04266 ASCH:  ASCH domain;  I  22.8   1E+02  0.0022   18.8   2.5   24   22-45     82-105 (105)
 18 PTZ00380 microtubule-associate  21.8      85  0.0018   21.2   2.2   21   20-41     84-104 (121)

No 1  
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.93  E-value=1.4e-26  Score=172.63  Aligned_cols=78  Identities=64%  Similarity=1.001  Sum_probs=75.5

Q ss_pred             CCcccccccCCCCCCHHHHHHHHHHHHhhcccCCCceeeeeeeeeEeeeCCCCCCCCCCCCCceeeehhhhhhhcCCC
Q 034729            1 MGETNALLQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWREHYSQPKPKRMGSATVSFKDIHKHFGSE   78 (85)
Q Consensus         1 mGe~Na~~~R~~l~~R~~l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWkp~~~qpkp~~~Gsa~isl~~~~~~~~~~   78 (85)
                      |||+||..+|+..+.|+++.++.++|+++|+.+||.|||||+|||++||||+|+|||+++|||++|||+|+.+.++.+
T Consensus       247 MgEsn~~~~Rn~~l~Ret~vAaaAiY~smya~e~~~iPATfqiiy~iGWk~~~s~pq~~~RGs~tVS~~dlgki~~~~  324 (325)
T KOG2940|consen  247 MGESNAALNRNAILNRETMVAAAAIYQSMYATEDGTIPATFQIIYMIGWKPHPSQPQAAERGSATVSFKDLGKIFEGQ  324 (325)
T ss_pred             hcccchhhccCccccHHHHHHHHHHHHHHhcCCCCCcceeEEEEEEEccCcCCCCCChhhcCCceEeHHHHHHhhcCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998764


No 2  
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.55  E-value=1.1e-07  Score=68.09  Aligned_cols=46  Identities=22%  Similarity=0.334  Sum_probs=39.3

Q ss_pred             CCcccccccCC-CCCCHHHHHHHHHHHHhhcccCCCceeeeeeeeeEeeeC
Q 034729            1 MGETNALLQRN-KILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWR   50 (85)
Q Consensus         1 mGe~Na~~~R~-~l~~R~~l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWk   50 (85)
                      ||++|...+|+ ++++|+.++++.+.|.    ..+|+||+||+|||++++|
T Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~lty~v~~~~~~~  250 (251)
T PRK10258        204 IGATHLHEGRDPRILTRSQLQRLQLAWP----QQQGRYPLTYHLFLGVIER  250 (251)
T ss_pred             hCCCCCCCCCCCCCCcHHHHHHHHHhcc----ccCCCcceEEEEEEEEEEc
Confidence            68888877765 7999999999888873    3588899999999999987


No 3  
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.80  E-value=4.8e-05  Score=52.69  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             CCHHHHHHHHHHHHhhcccCCCceeeeeeeeeEeeeC
Q 034729           14 LNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWR   50 (85)
Q Consensus        14 ~~R~~l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWk   50 (85)
                      ++|..+.++.+.|.+.++. || |++||+++|+++||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~-~g-i~~~~~~~~~~~~k  240 (240)
T TIGR02072       206 TSRKQLKAFLERYEQEFQP-DG-LPLTYHVVYGIAKK  240 (240)
T ss_pred             CCHHHHHHHHHHHHHhhcC-CC-ceeEEEEEEEEEEC
Confidence            7899999999999888764 88 99999999999997


No 4  
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=53.90  E-value=32  Score=24.37  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHHHHhhc-----ccCCCceeeeeeeeeEeeeCC
Q 034729           14 LNRETALATAAIYDSMF-----AAEDGSIPATFQVIFMTGWRE   51 (85)
Q Consensus        14 ~~R~~l~~a~~~Y~~~~-----~~~dG~ipATfEVIy~~gWkp   51 (85)
                      ++.+...++.+.|.+.+     ..+||.+.++|..+|+++-|.
T Consensus       215 l~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  257 (258)
T PRK01683        215 LTESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARRK  257 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEec
Confidence            45555556666655444     246899999999999998763


No 5  
>PF06883 RNA_pol_Rpa2_4:  RNA polymerase I, Rpa2 specific domain ;  InterPro: IPR009674 This domain is found between domain 3 and domain 5, but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=52.86  E-value=30  Score=20.32  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             CHHHHHHHHHHHHhhccc-CCCceeeeeeeeeEeee
Q 034729           15 NRETALATAAIYDSMFAA-EDGSIPATFQVIFMTGW   49 (85)
Q Consensus        15 ~R~~l~~a~~~Y~~~~~~-~dG~ipATfEVIy~~gW   49 (85)
                      ..+....+.+.+. .++. .+-.||.|.||+|.---
T Consensus         5 ~~~~a~~~~~~LR-~~Kv~~~~~vP~~lEI~~VP~~   39 (58)
T PF06883_consen    5 SPEEAEQIADQLR-YLKVEGEHGVPPTLEIGYVPPS   39 (58)
T ss_pred             cHHHHHHHHHHHH-HHHHcCCCCCCCceEEEEEECC
Confidence            3455555565553 3332 23469999999998643


No 6  
>PRK08317 hypothetical protein; Provisional
Probab=47.36  E-value=65  Score=21.72  Aligned_cols=37  Identities=14%  Similarity=0.076  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHHhhcccCCCceeeeeeeeeEeeeCC
Q 034729           13 ILNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWRE   51 (85)
Q Consensus        13 l~~R~~l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWkp   51 (85)
                      .++.+.+.+..+..++..  .+|.+..++.++..+|+||
T Consensus       205 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~kp  241 (241)
T PRK08317        205 GISADEADAWLADLAQLA--RAGEFFFSVTGFLVVGRKP  241 (241)
T ss_pred             CCCHHHHHHHHHHHHHHH--hcCCEEEEEEEEEEEEeCC
Confidence            456666666666665543  4778999999999999986


No 7  
>PF13269 DUF4060:  Protein of unknown function (DUF4060)
Probab=37.23  E-value=74  Score=19.82  Aligned_cols=35  Identities=11%  Similarity=0.105  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcccCCCceeeeeeeeeE
Q 034729           12 KILNRETALATAAIYDSMFAAEDGSIPATFQVIFM   46 (85)
Q Consensus        12 ~l~~R~~l~~a~~~Y~~~~~~~dG~ipATfEVIy~   46 (85)
                      .+++|....+|++.-.+.|++..-..|.||-|.|.
T Consensus         8 ~~~~r~A~~aAL~~H~~~yG~gr~~~~~tY~i~v~   42 (73)
T PF13269_consen    8 SPSHRVACDAALDAHQEKYGDGRQKWPETYTIKVR   42 (73)
T ss_pred             ChHHHHHHHHHHHHHHHHhCccccCCcEEEEEEEC
Confidence            37788888888888778887522238999988764


No 8  
>PF09373 PMBR:  Pseudomurein-binding repeat;  InterPro: IPR018975  Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins. 
Probab=36.82  E-value=36  Score=17.50  Aligned_cols=28  Identities=21%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcccCCCceeee
Q 034729           12 KILNRETALATAAIYDSMFAAEDGSIPAT   40 (85)
Q Consensus        12 ~l~~R~~l~~a~~~Y~~~~~~~dG~ipAT   40 (85)
                      +-++++.+..++..+ ..|-+..|++|-.
T Consensus         3 ~~i~~~~~~d~a~rv-~~f~~~ngRlPny   30 (33)
T PF09373_consen    3 GTISKEEYLDMASRV-NNFYESNGRLPNY   30 (33)
T ss_pred             ceecHHHHHHHHHHH-HHHHHHcCCCCCe
Confidence            346788888888777 4666778999864


No 9  
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=32.43  E-value=1e+02  Score=21.89  Aligned_cols=38  Identities=16%  Similarity=0.209  Sum_probs=25.3

Q ss_pred             CCHHHHHHHHHH----HHhhc-ccCCCceeeeeeeeeEeeeCC
Q 034729           14 LNRETALATAAI----YDSMF-AAEDGSIPATFQVIFMTGWRE   51 (85)
Q Consensus        14 ~~R~~l~~a~~~----Y~~~~-~~~dG~ipATfEVIy~~gWkp   51 (85)
                      ++.+...++.+.    +.+.+ ..+||++..+|.-|+++|-|+
T Consensus       212 l~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~a~~~  254 (255)
T PRK14103        212 LSDDSWEQFRAELIPLLREAYPPRADGTTFFPFRRVFVVARVG  254 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCcEEeeeccEEEEEEeC
Confidence            444444444444    43333 347898999999999998876


No 10 
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=31.39  E-value=29  Score=23.93  Aligned_cols=19  Identities=26%  Similarity=0.747  Sum_probs=13.7

Q ss_pred             HHhhcccCCCceeeeeeeeeEe
Q 034729           26 YDSMFAAEDGSIPATFQVIFMT   47 (85)
Q Consensus        26 Y~~~~~~~dG~ipATfEVIy~~   47 (85)
                      |...|.++||++   ||++|+.
T Consensus       110 Yg~~fqDpDGh~---wE~l~m~  128 (133)
T COG3607         110 YGRSFQDPDGHV---WEFLWMD  128 (133)
T ss_pred             cceeeeCCCCCe---EEEEEeC
Confidence            556667778877   8887764


No 11 
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP  (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion.  GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1.  Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8).  ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=31.19  E-value=49  Score=21.71  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=15.5

Q ss_pred             HHHHHHHHhhcccCCCceeeee
Q 034729           20 LATAAIYDSMFAAEDGSIPATF   41 (85)
Q Consensus        20 ~~a~~~Y~~~~~~~dG~ipATf   41 (85)
                      ..+-++| +.|+++||-|-.+|
T Consensus        85 ~~~~~lY-~~~kd~DGfLyl~Y  105 (112)
T cd01611          85 ATMSQLY-EEHKDEDGFLYMTY  105 (112)
T ss_pred             hHHHHHH-HHhCCCCCEEEEEE
Confidence            3457888 57788899776666


No 12 
>PF02991 Atg8:  Autophagy protein Atg8 ubiquitin like;  InterPro: IPR004241  Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19.  Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=31.05  E-value=48  Score=21.53  Aligned_cols=20  Identities=25%  Similarity=0.592  Sum_probs=13.9

Q ss_pred             HHHHHHHhhcccCCCceeeee
Q 034729           21 ATAAIYDSMFAAEDGSIPATF   41 (85)
Q Consensus        21 ~a~~~Y~~~~~~~dG~ipATf   41 (85)
                      .+.++|+ .++++||=|-.||
T Consensus        78 tm~elY~-~~kdeDGFLY~~Y   97 (104)
T PF02991_consen   78 TMGELYE-KYKDEDGFLYMTY   97 (104)
T ss_dssp             BHHHHHH-HHB-TTSSEEEEE
T ss_pred             HHHHHHH-HhCCCCCeEEEEe
Confidence            3578884 6688999777766


No 13 
>PF00446 GnRH:  Gonadotropin-releasing hormone;  InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=29.30  E-value=20  Score=14.32  Aligned_cols=7  Identities=29%  Similarity=1.184  Sum_probs=4.6

Q ss_pred             eEeeeCC
Q 034729           45 FMTGWRE   51 (85)
Q Consensus        45 y~~gWkp   51 (85)
                      |-+||+|
T Consensus         3 wS~~w~P    9 (10)
T PF00446_consen    3 WSHGWKP    9 (10)
T ss_pred             cccccCC
Confidence            4467876


No 14 
>PF02905 EBV-NA1:  Epstein Barr virus nuclear antigen-1, DNA-binding domain;  InterPro: IPR004186 The Epstein-Barr virus (strain GD1) nuclear antigen 1 (EBNA1) binds to and activates DNA replication from the latent origin of replication. The crystal structure of the DNA-binding and dimerization domains were solved [], and it was found that EBNA1 appears to bind DNA via two independent regions, the core and the flanking DNA-binding domains. This DNA-binding domain has a ferredoxin-like fold.; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0006260 DNA replication, 0006275 regulation of DNA replication, 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1B3T_B 1VHI_B.
Probab=24.69  E-value=52  Score=22.86  Aligned_cols=28  Identities=14%  Similarity=0.119  Sum_probs=16.3

Q ss_pred             CCCceeeeeeeeeEeeeCCCCCCCCCCCC
Q 034729           33 EDGSIPATFQVIFMTGWREHYSQPKPKRM   61 (85)
Q Consensus        33 ~dG~ipATfEVIy~~gWkp~~~qpkp~~~   61 (85)
                      +.+||.--+.+=|+++|.|.| ||-|+..
T Consensus        69 pe~RltpL~RLPyG~a~gpGP-qPgPl~E   96 (146)
T PF02905_consen   69 PECRLTPLSRLPYGSAPGPGP-QPGPLRE   96 (146)
T ss_dssp             TTSEE---EEEE--SSSSSSS-S-GTT-E
T ss_pred             cceeccccccCccCcCCCCCC-CCCcchh
Confidence            456666668888999999987 7777643


No 15 
>COG1647 Esterase/lipase [General function prediction only]
Probab=23.98  E-value=91  Score=23.55  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=23.7

Q ss_pred             CCHHHHHHHHHHHHhhcccCCCceeeeeeeeeEeeeC
Q 034729           14 LNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWR   50 (85)
Q Consensus        14 ~~R~~l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWk   50 (85)
                      ..|+||..+.++|+..-  ++|     |+=|+..|.+
T Consensus        64 ~~~DW~~~v~d~Y~~L~--~~g-----y~eI~v~GlS   93 (243)
T COG1647          64 TPRDWWEDVEDGYRDLK--EAG-----YDEIAVVGLS   93 (243)
T ss_pred             CHHHHHHHHHHHHHHHH--HcC-----CCeEEEEeec
Confidence            46999999999997652  355     8888888876


No 16 
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=23.41  E-value=90  Score=24.89  Aligned_cols=32  Identities=16%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             CCHHHHHHHHHHHHhhcccCCCceeeeeeeeeEeeeC
Q 034729           14 LNRETALATAAIYDSMFAAEDGSIPATFQVIFMTGWR   50 (85)
Q Consensus        14 ~~R~~l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWk   50 (85)
                      ..+.++..+..-..+.+     .||..|+|+++.|=.
T Consensus        47 ~~~~v~~~a~~~lreLl-----~iPd~Y~VlflqGGa   78 (365)
T COG1932          47 EFKNVLEEAEKDLRELL-----NIPDDYKVLFLQGGA   78 (365)
T ss_pred             HHHHHHHHHHHHHHHHh-----CCCCCceEEEEcCcc
Confidence            34555555555555554     289999999998743


No 17 
>PF04266 ASCH:  ASCH domain;  InterPro: IPR007374 The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain (IPR002478 from INTERPRO). It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation [].; PDB: 1TE7_A 2Z0T_C 1WK2_A 2DP9_A 1T62_A 3S9X_A 2E5O_A 1XNE_A 3IUW_B 1S04_A.
Probab=22.80  E-value=1e+02  Score=18.78  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=15.1

Q ss_pred             HHHHHHhhcccCCCceeeeeeeee
Q 034729           22 TAAIYDSMFAAEDGSIPATFQVIF   45 (85)
Q Consensus        22 a~~~Y~~~~~~~dG~ipATfEVIy   45 (85)
                      ...+|......+++-+..-||+||
T Consensus        82 ~~~~y~~~~~~~~~v~~i~f~~v~  105 (105)
T PF04266_consen   82 HRDIYPREIEPDDGVVAIEFEVVE  105 (105)
T ss_dssp             HHHHCHHHHHCCCEEEEEEEEEEE
T ss_pred             HHHHccccccccceEEEEEEEecC
Confidence            344554443335677888899987


No 18 
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=21.78  E-value=85  Score=21.17  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=15.5

Q ss_pred             HHHHHHHHhhcccCCCceeeee
Q 034729           20 LATAAIYDSMFAAEDGSIPATF   41 (85)
Q Consensus        20 ~~a~~~Y~~~~~~~dG~ipATf   41 (85)
                      ..|-++|+ .++++||=|-.||
T Consensus        84 ~~mg~lYe-~~KDeDGFLYi~Y  104 (121)
T PTZ00380         84 ATVGDIAD-ACKRDDGFLYVSV  104 (121)
T ss_pred             chHHHHHH-HhcCCCCeEEEEE
Confidence            34678994 6688999776666


Done!