Query 034729
Match_columns 85
No_of_seqs 127 out of 493
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bgv_A MRNA CAP guanine-N7 met 98.0 7.4E-08 2.5E-12 69.0 -4.6 50 1-53 235-286 (313)
2 1vl5_A Unknown conserved prote 96.9 0.0005 1.7E-08 47.3 2.8 37 16-52 214-253 (260)
3 1xxl_A YCGJ protein; structura 96.1 0.0035 1.2E-07 42.8 2.8 36 16-51 198-237 (239)
4 2p35_A Trans-aconitate 2-methy 94.9 0.044 1.5E-06 37.0 5.0 34 18-51 225-259 (259)
5 3ccf_A Cyclopropane-fatty-acyl 92.9 0.1 3.6E-06 36.0 3.8 33 18-51 246-278 (279)
6 2yqz_A Hypothetical protein TT 78.2 4.7 0.00016 26.7 5.3 33 19-51 231-263 (263)
7 4hg2_A Methyltransferase type 62.7 9.2 0.00031 26.6 4.0 36 16-51 217-252 (257)
8 3mgg_A Methyltransferase; NYSG 49.8 19 0.00066 24.1 3.8 33 12-45 233-266 (276)
9 4gym_A Glyoxalase/bleomycin re 36.1 22 0.00075 21.5 2.2 18 30-50 120-137 (149)
10 3rui_B Autophagy-related prote 32.1 28 0.00097 22.1 2.3 21 21-42 92-112 (118)
11 3h9d_A ATG8, microtubule-assoc 31.2 30 0.001 22.1 2.3 20 22-42 94-113 (119)
12 3m95_A Autophagy related prote 31.1 30 0.001 22.4 2.3 20 22-42 99-118 (125)
13 2r2q_A Gamma-aminobutyric acid 29.3 34 0.0012 21.2 2.3 19 22-41 90-108 (110)
14 2zjd_A Microtubule-associated 27.8 37 0.0013 22.0 2.3 20 22-42 100-119 (130)
15 4fle_A Esterase; structural ge 26.9 25 0.00085 21.9 1.3 10 43-52 5-14 (202)
16 1eo6_A GATE-16, golgi-associat 26.2 42 0.0014 21.1 2.3 19 22-41 91-109 (117)
17 1b3t_A Protein (nuclear protei 23.4 46 0.0016 22.1 2.1 28 33-61 69-96 (147)
18 1wz3_A Autophagy 12B, ATG12B, 21.2 59 0.002 19.8 2.2 18 22-41 72-89 (96)
No 1
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.05 E-value=7.4e-08 Score=69.04 Aligned_cols=50 Identities=10% Similarity=-0.065 Sum_probs=10.1
Q ss_pred CCcccccccCC-CCCCHHHHHHHHHHHHh-hcccCCCceeeeeeeeeEeeeCCCC
Q 034729 1 MGETNALLQRN-KILNRETALATAAIYDS-MFAAEDGSIPATFQVIFMTGWREHY 53 (85)
Q Consensus 1 mGe~Na~~~R~-~l~~R~~l~~a~~~Y~~-~~~~~dG~ipATfEVIy~~gWkp~~ 53 (85)
||++|+...|+ ++++ .+.++. +|++ .+...||+||+||||||+++||...
T Consensus 235 ~g~~~~~~~r~~~l~~--~~~~~~-~y~~~~~~~~~~~~~~ty~~~~~~~~~~~~ 286 (313)
T 3bgv_A 235 FYEEKIKNNENKMLLK--RMQALE-PYPANESSKLVSEKVDDYEHAAKYMKNSQV 286 (313)
T ss_dssp HHHHHTTSHHHHHHHH--HHC----------------------------------
T ss_pred HHHHhccchhhhHHHH--hhhccc-ccCccccccccccchhhhHHHHHHHhhccc
Confidence 46677765555 3433 465655 9975 2445688899999999999999743
No 2
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=96.91 E-value=0.0005 Score=47.32 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhccc--CCCc-eeeeeeeeeEeeeCCC
Q 034729 16 RETALATAAIYDSMFAA--EDGS-IPATFQVIFMTGWREH 52 (85)
Q Consensus 16 R~~l~~a~~~Y~~~~~~--~dG~-ipATfEVIy~~gWkp~ 52 (85)
++.+.++.+.|.+.|.. +||. +++||+++|++||||+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~k~~ 253 (260)
T 1vl5_A 214 SDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARKPT 253 (260)
T ss_dssp HHHHHTSCHHHHHHTTCEEETTEEEEEEEEEEEEEEECCC
T ss_pred HHHHHhCcHHHHHHcceeccCCCcceEEeeEEEEEEEccc
Confidence 44555556778777764 4674 8999999999999985
No 3
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=96.07 E-value=0.0035 Score=42.79 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhccc---CCCc-eeeeeeeeeEeeeCC
Q 034729 16 RETALATAAIYDSMFAA---EDGS-IPATFQVIFMTGWRE 51 (85)
Q Consensus 16 R~~l~~a~~~Y~~~~~~---~dG~-ipATfEVIy~~gWkp 51 (85)
|+.+.++.+.|.+.|.. +||. ++.||++||+++||-
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~t~~~~~~~~~k~ 237 (239)
T 1xxl_A 198 ITHLNHASDEARDTFCITLNQNGQPISFCLKAILIQGIKR 237 (239)
T ss_dssp HHHHHTCCHHHHHHTTCEECTTSCEEEEEEEEEEEEEEEC
T ss_pred HHHHHhCCHHHHHHhCeeecCCCCceeEEeeeeehehhcc
Confidence 56666777888888875 7898 599999999999984
No 4
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=94.90 E-value=0.044 Score=37.01 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcc-cCCCceeeeeeeeeEeeeCC
Q 034729 18 TALATAAIYDSMFA-AEDGSIPATFQVIFMTGWRE 51 (85)
Q Consensus 18 ~l~~a~~~Y~~~~~-~~dG~ipATfEVIy~~gWkp 51 (85)
++..+.+.+.+.+. .+||.+++||++++++|+||
T Consensus 225 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~Kp 259 (259)
T 2p35_A 225 FLADYTRRIAAAYPPMADGRLLLRFPRLFVVAVKK 259 (259)
T ss_dssp HHHHHHHHHHHHSCCCTTSCEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEeeeEEEEEecC
Confidence 33344444544443 25888999999999999996
No 5
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=92.86 E-value=0.1 Score=36.01 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcccCCCceeeeeeeeeEeeeCC
Q 034729 18 TALATAAIYDSMFAAEDGSIPATFQVIFMTGWRE 51 (85)
Q Consensus 18 ~l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWkp 51 (85)
++..+.+.|++.+. ++|.++++|++++++|+||
T Consensus 246 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~v~a~Kp 278 (279)
T 3ccf_A 246 LIRKVEATLQDKLY-HQESWTADYRRIRIVSIKA 278 (279)
T ss_dssp HHHHHHHHHHHHHE-ETTEEEECCEEEEEEEEEC
T ss_pred HHHHHHHHHHhhcc-CCCcEEEEEEEEEEEEecC
Confidence 34444555654443 6899999999999999996
No 6
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=78.24 E-value=4.7 Score=26.72 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcccCCCceeeeeeeeeEeeeCC
Q 034729 19 ALATAAIYDSMFAAEDGSIPATFQVIFMTGWRE 51 (85)
Q Consensus 19 l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWkp 51 (85)
+.++.+.+++.+.+.++.++.++.+++.+|-||
T Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~rkp 263 (263)
T 2yqz_A 231 MERLWAWAEAELGDLDRPFPVEKRFLLRVSRLG 263 (263)
T ss_dssp HHHHHHHHHHHSSCTTSCEEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCcCccccccceeEEEeeecC
Confidence 444445555556666778999999999999886
No 7
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=62.67 E-value=9.2 Score=26.63 Aligned_cols=36 Identities=8% Similarity=0.163 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhcccCCCceeeeeeeeeEeeeCC
Q 034729 16 RETALATAAIYDSMFAAEDGSIPATFQVIFMTGWRE 51 (85)
Q Consensus 16 R~~l~~a~~~Y~~~~~~~dG~ipATfEVIy~~gWkp 51 (85)
.+.+..+.+.+.+.++++++.+.++|-|.+..|..+
T Consensus 217 ~d~l~~~~~~l~~~~g~~~~~~~v~~pi~l~~Grv~ 252 (257)
T 4hg2_A 217 ADPLAEIAPALRAAWGTPERPLRVTWPIAIRAGRIL 252 (257)
T ss_dssp SCHHHHHHHHHHHHHSSTTSCEEEEEEEEEEEEESS
T ss_pred ccHHHHHHHHHHHhcCCCCcEEEEEEEEEEEEEEEC
Confidence 456677777787888888888999999999998653
No 8
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=49.82 E-value=19 Score=24.09 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCCceeeee-eeee
Q 034729 12 KILNRETALATAAIYDSMFAAEDGSIPATF-QVIF 45 (85)
Q Consensus 12 ~l~~R~~l~~a~~~Y~~~~~~~dG~ipATf-EVIy 45 (85)
++.+++.+.++.+.+.+. .++||.++.|| +++|
T Consensus 233 g~~~~~~~~~~~~~~~~~-~~~~g~~~~tf~~~~~ 266 (276)
T 3mgg_A 233 QIIKEEEWEKGIEELHKT-AEHGGTFCYTFFKGWG 266 (276)
T ss_dssp TSSCHHHHHHHHHHHHHT-TSTTCEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhc-cCCCeEEEEEEEEEEE
Confidence 577999999999998554 56789888875 4444
No 9
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=36.15 E-value=22 Score=21.48 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=11.6
Q ss_pred cccCCCceeeeeeeeeEeeeC
Q 034729 30 FAAEDGSIPATFQVIFMTGWR 50 (85)
Q Consensus 30 ~~~~dG~ipATfEVIy~~gWk 50 (85)
|+|+||.+ +||+|+.-++
T Consensus 120 f~DPDGn~---iEi~~~~p~a 137 (149)
T 4gym_A 120 FHDLDGHL---WEVMWMSAEA 137 (149)
T ss_dssp EECTTCCE---EEEEEECTTT
T ss_pred EEcCCCCE---EEEEEEChhh
Confidence 45677765 7888765443
No 10
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=32.14 E-value=28 Score=22.14 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=15.7
Q ss_pred HHHHHHHhhcccCCCceeeeee
Q 034729 21 ATAAIYDSMFAAEDGSIPATFQ 42 (85)
Q Consensus 21 ~a~~~Y~~~~~~~dG~ipATfE 42 (85)
.+.++| +.|+++||-|-.+|-
T Consensus 92 ~m~~lY-~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 92 LMSAIY-QEHKDKDGFLYVTYS 112 (118)
T ss_dssp BHHHHH-HHHCCTTSCEEEEEE
T ss_pred hHHHHH-HHcCCCCCeEEEEEe
Confidence 357889 577889998877763
No 11
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=31.20 E-value=30 Score=22.08 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=15.2
Q ss_pred HHHHHHhhcccCCCceeeeee
Q 034729 22 TAAIYDSMFAAEDGSIPATFQ 42 (85)
Q Consensus 22 a~~~Y~~~~~~~dG~ipATfE 42 (85)
+.++| +.|+++||-|-.+|-
T Consensus 94 m~~lY-~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 94 MADIY-SKYKDEDGFLYMKYS 113 (119)
T ss_dssp HHHHH-HHHCCTTSCEEEEEE
T ss_pred HHHHH-HHcCCCCCeEEEEEe
Confidence 57889 577888998777663
No 12
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=31.08 E-value=30 Score=22.36 Aligned_cols=20 Identities=20% Similarity=0.261 Sum_probs=15.2
Q ss_pred HHHHHHhhcccCCCceeeeee
Q 034729 22 TAAIYDSMFAAEDGSIPATFQ 42 (85)
Q Consensus 22 a~~~Y~~~~~~~dG~ipATfE 42 (85)
+.++| +.++++||-|-.+|-
T Consensus 99 m~~lY-~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 99 MGSLY-QEHHDEDFFLYIAFS 118 (125)
T ss_dssp HHHHH-HHHCCTTSCEEEEEE
T ss_pred HHHHH-HHcCCCCCeEEEEec
Confidence 57889 577889998777663
No 13
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=29.32 E-value=34 Score=21.23 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=14.5
Q ss_pred HHHHHHhhcccCCCceeeee
Q 034729 22 TAAIYDSMFAAEDGSIPATF 41 (85)
Q Consensus 22 a~~~Y~~~~~~~dG~ipATf 41 (85)
+.++| +.|+++||-|-.+|
T Consensus 90 m~~LY-~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 90 MGQLY-EDNHEEDYFLYVAY 108 (110)
T ss_dssp HHHHH-HHHCCTTSCEEEEE
T ss_pred HHHHH-HHcCCCCCEEEEEE
Confidence 57889 56788899877665
No 14
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=27.79 E-value=37 Score=22.01 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=15.2
Q ss_pred HHHHHHhhcccCCCceeeeee
Q 034729 22 TAAIYDSMFAAEDGSIPATFQ 42 (85)
Q Consensus 22 a~~~Y~~~~~~~dG~ipATfE 42 (85)
+.++| +.|+++||-|-.+|-
T Consensus 100 m~~lY-~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 100 ISEVY-ESEKDEDGFLYMVYA 119 (130)
T ss_dssp HHHHH-HHHCCTTSCEEEEEE
T ss_pred HHHHH-HHhCCCCCEEEEEEe
Confidence 57889 567888998877763
No 15
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=26.86 E-value=25 Score=21.93 Aligned_cols=10 Identities=10% Similarity=0.747 Sum_probs=8.4
Q ss_pred eeeEeeeCCC
Q 034729 43 VIFMTGWREH 52 (85)
Q Consensus 43 VIy~~gWkp~ 52 (85)
|||+|||...
T Consensus 5 Il~lHGf~ss 14 (202)
T 4fle_A 5 LLYIHGFNSS 14 (202)
T ss_dssp EEEECCTTCC
T ss_pred EEEeCCCCCC
Confidence 8999999754
No 16
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=26.16 E-value=42 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=14.4
Q ss_pred HHHHHHhhcccCCCceeeee
Q 034729 22 TAAIYDSMFAAEDGSIPATF 41 (85)
Q Consensus 22 a~~~Y~~~~~~~dG~ipATf 41 (85)
+.++| +.|+++||-|-.+|
T Consensus 91 m~~LY-~~~kd~DGfLyi~Y 109 (117)
T 1eo6_A 91 MGQLY-EKEKDEDGFLYVAY 109 (117)
T ss_dssp HHHHH-HHHCCTTSCEEEEE
T ss_pred HHHHH-HHhCCCCCEEEEEE
Confidence 57889 56778899877665
No 17
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=23.42 E-value=46 Score=22.13 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=21.7
Q ss_pred CCCceeeeeeeeeEeeeCCCCCCCCCCCC
Q 034729 33 EDGSIPATFQVIFMTGWREHYSQPKPKRM 61 (85)
Q Consensus 33 ~dG~ipATfEVIy~~gWkp~~~qpkp~~~ 61 (85)
+..||.--+.+=|+++|-|.| ||-|+..
T Consensus 69 pecRltpL~RLPyG~a~gpGP-qPgPlrE 96 (147)
T 1b3t_A 69 PQCRLTPLSRLPFGMAPGPGP-QPGPLRE 96 (147)
T ss_dssp TTCEECCCEEEECCCCSSSSC-CCCTTCE
T ss_pred chhccccccccccCcCCCCCC-CCCcchh
Confidence 456666668889999999987 7877743
No 18
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=21.24 E-value=59 Score=19.84 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=13.5
Q ss_pred HHHHHHhhcccCCCceeeee
Q 034729 22 TAAIYDSMFAAEDGSIPATF 41 (85)
Q Consensus 22 a~~~Y~~~~~~~dG~ipATf 41 (85)
+.+.| +.|++ ||.|-.+|
T Consensus 72 m~~LY-~~~kd-DGfLyi~Y 89 (96)
T 1wz3_A 72 VIDLY-NNFGF-DGKLVVNY 89 (96)
T ss_dssp HHHHH-HHHCB-TTBEEEEE
T ss_pred HHHHH-HHhCC-CCEEEEEE
Confidence 56788 57777 99877766
Done!