Query 034730
Match_columns 85
No_of_seqs 121 out of 376
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lom_A HIG1 domain family memb 99.9 2E-28 6.7E-33 161.3 0.0 77 8-84 9-90 (93)
2 2lon_A HIG1 domain family memb 99.9 2.8E-28 9.6E-33 162.2 0.0 78 7-84 8-91 (99)
3 3arc_Y Protein YCF12; PSII, me 66.4 10 0.00034 19.6 3.6 24 25-48 5-28 (29)
4 2jwa_A Receptor tyrosine-prote 56.4 8.6 0.0003 21.5 2.4 15 71-85 30-44 (44)
5 1rh5_B Preprotein translocase 52.9 18 0.00061 22.1 3.7 22 23-44 32-53 (74)
6 2wwb_B SEC61gamma, protein tra 46.2 19 0.00066 21.6 3.0 44 1-44 1-52 (68)
7 1q90_G Cytochrome B6F complex 45.2 25 0.00087 19.1 3.1 23 27-49 10-34 (37)
8 2lx0_A Membrane fusion protein 43.2 34 0.0011 17.7 3.2 20 26-45 8-27 (32)
9 3bz1_y Protein YCF12; electron 42.2 37 0.0013 19.2 3.6 24 25-48 22-45 (46)
10 1vf5_G Protein PET G; photosyn 40.3 19 0.00066 19.6 2.1 23 27-49 10-34 (37)
11 3mp7_B Preprotein translocase 32.6 51 0.0018 19.2 3.3 26 19-44 24-49 (61)
12 2ww9_B Protein transport prote 31.2 32 0.0011 21.4 2.3 22 23-44 45-66 (80)
13 2ijq_A Hypothetical protein; s 21.6 69 0.0024 21.9 2.8 22 36-57 78-99 (161)
No 1
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=99.89 E-value=2e-28 Score=161.32 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=65.8
Q ss_pred CCChhhhhhh---hhhhcCchHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcc
Q 034730 8 EPTLEDFSEK---KKRVRNPLVPIGALMTAGVLTAGLISFR-QGNSHLGQLLMRARVVVQGATVGLMVGT-AYYYGDTPW 82 (85)
Q Consensus 8 ~p~~~~~~~~---rK~~~~plvpig~~at~~~L~~Gl~~~r-~G~~~~SnklMr~RV~aQg~tV~~lvg~-~~~~~~~~~ 82 (85)
.|++||++.+ ||.+||||+||||++|+++|++|+++|+ +||.++||||||+||+|||+||++|+++ .|.+.++++
T Consensus 9 ~~~~~e~~~~K~~rk~ke~PlvpIg~~~~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~~~~~ 88 (93)
T 2lom_A 9 LPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFW 88 (93)
Confidence 4666777766 9999999999999999999999999986 9999999999999999999999988555 555556665
Q ss_pred cc
Q 034730 83 QS 84 (85)
Q Consensus 83 ~k 84 (85)
.|
T Consensus 89 ~~ 90 (93)
T 2lom_A 89 AK 90 (93)
Confidence 43
No 2
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=99.89 E-value=2.8e-28 Score=162.16 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=66.4
Q ss_pred CCCChh-hhhhh---hhhhcCchHHHHHHHHHHHHHHHHHHh-hcCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHhccC
Q 034730 7 VEPTLE-DFSEK---KKRVRNPLVPIGALMTAGVLTAGLISF-RQGNSHLGQLLMRARVVVQGATVGLM-VGTAYYYGDT 80 (85)
Q Consensus 7 ~~p~~~-~~~~~---rK~~~~plvpig~~at~~~L~~Gl~~~-r~G~~~~SnklMr~RV~aQg~tV~~l-vg~~~~~~~~ 80 (85)
..|++| |++.+ ||.+||||+||||++|+++|++|+++| ++||+++||||||+||+|||+||++| +|..|.+.++
T Consensus 8 ~~~~~~ees~~~K~~rk~ke~PlvpIg~l~~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~~~ 87 (99)
T 2lon_A 8 WVPPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSD 87 (99)
Confidence 356676 55555 999999999999999999999999998 59999999999999999999999987 5556666677
Q ss_pred cccc
Q 034730 81 PWQS 84 (85)
Q Consensus 81 ~~~k 84 (85)
++.|
T Consensus 88 ~~~~ 91 (99)
T 2lon_A 88 YVKR 91 (99)
Confidence 6654
No 3
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=66.45 E-value=10 Score=19.64 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCC
Q 034730 25 LVPIGALMTAGVLTAGLISFRQGN 48 (85)
Q Consensus 25 lvpig~~at~~~L~~Gl~~~r~G~ 48 (85)
+..++++..++=+...+.++|+||
T Consensus 5 L~~l~lIv~aGP~VI~lLa~r~Gn 28 (29)
T 3arc_Y 5 LTMIAMIGIAGPMIIFLLAVRRGN 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCChheeehhhhcCC
Confidence 345666777777888888899887
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=56.39 E-value=8.6 Score=21.54 Aligned_cols=15 Identities=13% Similarity=-0.228 Sum_probs=7.4
Q ss_pred HHHHHHhccCccccC
Q 034730 71 VGTAYYYGDTPWQSK 85 (85)
Q Consensus 71 vg~~~~~~~~~~~k~ 85 (85)
+.+.|.+++..++||
T Consensus 30 ~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 30 VFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHCSCCCC
T ss_pred HHHhheehhhhhccC
Confidence 334555555555444
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=52.87 E-value=18 Score=22.12 Aligned_cols=22 Identities=14% Similarity=0.480 Sum_probs=14.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 034730 23 NPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~ 44 (85)
+-|.-++.+..+|.++.|+..|
T Consensus 32 ~EF~~iak~~~iG~~imG~IGf 53 (74)
T 1rh5_B 32 DEYLAVAKVTALGISLLGIIGY 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777664
No 6
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=46.24 E-value=19 Score=21.62 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCCCCCCCCChhhhhhh--------hhhhcCchHHHHHHHHHHHHHHHHHHh
Q 034730 1 MDKIGTVEPTLEDFSEK--------KKRVRNPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 1 ~~~~~~~~p~~~~~~~~--------rK~~~~plvpig~~at~~~L~~Gl~~~ 44 (85)
||.+.+..-...|+..+ +|--.+-|.-++.+..+|.++.|+..|
T Consensus 1 ~~~~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf 52 (68)
T 2wwb_B 1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGF 52 (68)
T ss_dssp CCSSSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454443334455444 232334455566666667777776654
No 7
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=45.18 E-value=25 Score=19.07 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=8.7
Q ss_pred HHHHHHHHHH-HHHHHHH-hhcCCh
Q 034730 27 PIGALMTAGV-LTAGLIS-FRQGNS 49 (85)
Q Consensus 27 pig~~at~~~-L~~Gl~~-~r~G~~ 49 (85)
++|++-++.+ |....|. +||||.
T Consensus 10 VlGlipvtlaGLfv~Ay~QyrRg~~ 34 (37)
T 1q90_G 10 VLGLVPVTIAGLFVTAYLQYLRGDL 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhhHHHHHHHHHHHHHHHHhhccc
Confidence 3455444333 4444444 678874
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=43.16 E-value=34 Score=17.74 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034730 26 VPIGALMTAGVLTAGLISFR 45 (85)
Q Consensus 26 vpig~~at~~~L~~Gl~~~r 45 (85)
|+.|+.+..-.|..|++-|+
T Consensus 8 viaglvalltflafgfwlfk 27 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677777778888887764
No 9
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=42.24 E-value=37 Score=19.19 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCC
Q 034730 25 LVPIGALMTAGVLTAGLISFRQGN 48 (85)
Q Consensus 25 lvpig~~at~~~L~~Gl~~~r~G~ 48 (85)
|..++++..++=+...+.++|+||
T Consensus 22 L~~LalIv~aGPlVI~LLa~R~GN 45 (46)
T 3bz1_y 22 LTMIAMIGIAGPMIIFLLAVRRGN 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcccHHhhhHHhhcCC
Confidence 556677777777888888899887
No 10
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=40.25 E-value=19 Score=19.56 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=10.4
Q ss_pred HHHHHHHHHH-HHHHHHH-hhcCCh
Q 034730 27 PIGALMTAGV-LTAGLIS-FRQGNS 49 (85)
Q Consensus 27 pig~~at~~~-L~~Gl~~-~r~G~~ 49 (85)
++|++-++.+ |....|. +||||.
T Consensus 10 VlGlipvtl~GLfv~Ay~QyrRg~q 34 (37)
T 1vf5_G 10 VLGLVFATLGGLFYAAYQQYKRPNE 34 (37)
T ss_dssp HHHHHHHHHHHHTHHHHHHTCC---
T ss_pred HHhhHHHHHHHHHHHHHHHHhhccc
Confidence 4455544433 4444444 788874
No 11
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=32.62 E-value=51 Score=19.22 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=16.2
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHHHh
Q 034730 19 KRVRNPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 19 K~~~~plvpig~~at~~~L~~Gl~~~ 44 (85)
|--.+-+.-++-+..++.++.|+..|
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~iGf 49 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIGM 49 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666777777777777664
No 12
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=31.17 E-value=32 Score=21.37 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=14.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 034730 23 NPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~ 44 (85)
+-|.-++.+..+|.++.|+..|
T Consensus 45 ~Ef~~iak~t~iG~~imG~IGf 66 (80)
T 2ww9_B 45 KEYTKIVKAVGIGFIAVGIIGY 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777664
No 13
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.62 E-value=69 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=17.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHH
Q 034730 36 VLTAGLISFRQGNSHLGQLLMR 57 (85)
Q Consensus 36 ~L~~Gl~~~r~G~~~~SnklMr 57 (85)
|+..|++..++||.+-+.+|++
T Consensus 78 ~lAvAl~H~~rgN~~GA~~ll~ 99 (161)
T 2ijq_A 78 VAAGAYKHFDFEDDDGMRSLFR 99 (161)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 3566788899999998888875
Done!