Query 034731
Match_columns 85
No_of_seqs 76 out of 78
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 09:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034731.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034731hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54g_ f.23.2.1 (G:) Mitochon 53.2 7.3 0.00053 23.5 3.5 32 33-65 14-46 (84)
2 d1f16a_ f.1.4.1 (A:) Proapopto 46.6 8.2 0.00059 25.7 3.3 26 29-55 164-189 (192)
3 d1i8ya_ g.3.16.1 (A:) N-termin 24.3 6.4 0.00047 19.5 -0.3 12 22-33 16-27 (28)
4 d1jb0m_ f.23.19.1 (M:) Subunit 23.3 33 0.0024 17.1 2.5 20 41-60 10-29 (31)
5 d2axtz1 f.17.5.1 (Z:1-62) Phot 22.8 34 0.0025 19.5 2.8 27 29-55 27-53 (62)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 22.0 10 0.00076 22.1 0.3 18 44-61 31-48 (91)
7 d4cpai_ g.3.2.1 (I:) Carboxype 20.3 18 0.0013 18.8 1.0 8 24-31 17-24 (37)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 19.3 61 0.0044 18.6 3.6 11 48-58 46-56 (100)
9 d1vlfm1 b.52.2.2 (M:729-875) T 16.6 30 0.0022 20.8 1.7 20 18-37 83-102 (147)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 15.9 51 0.0037 17.9 2.4 28 34-61 4-32 (57)
No 1
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=53.16 E-value=7.3 Score=23.50 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=16.9
Q ss_pred cchhhhHHHHH-HHHHHHHHHHHhhhcccccCCC
Q 034731 33 KHWKRNTAIAM-AGIFLICIPIAMKSAELEQRPH 65 (85)
Q Consensus 33 ~nWk~NTai~~-v~i~~~~~~~~~~Sa~~E~R~~ 65 (85)
+-||.=|.++. -+|+++++-+| +.++.+.|+.
T Consensus 14 ~lWkkis~~va~P~i~l~~~n~~-~~~~h~e~pe 46 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTLNSW-LHSGHRERPA 46 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHT-TSCSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccccccCCC
Confidence 45998777554 44444444444 4444444443
No 2
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.64 E-value=8.2 Score=25.68 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=14.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHh
Q 034731 29 NCRPKHWKRNTAIAMAGIFLICIPIAM 55 (85)
Q Consensus 29 ~~~P~nWk~NTai~~v~i~~~~~~~~~ 55 (85)
+.++..|+.- .++++++++++..+|+
T Consensus 164 ~f~~~~w~~~-~~~~~~v~~~~~~~~~ 189 (192)
T d1f16a_ 164 YFGTPTWQTV-TIFVAGVLTASLTIWK 189 (192)
T ss_dssp HCCCSCCHHH-HHHHHHHHHHHHHHHT
T ss_pred HcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 3456678753 4445555555555554
No 3
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=24.27 E-value=6.4 Score=19.52 Aligned_cols=12 Identities=33% Similarity=0.238 Sum_probs=9.7
Q ss_pred ecCCCCCCCCCc
Q 034731 22 WSMPGGPNCRPK 33 (85)
Q Consensus 22 WSPaGGW~~~P~ 33 (85)
=||.|=|||-|-
T Consensus 16 lspygvw~c~p~ 27 (28)
T d1i8ya_ 16 LSPYGVWYCSPF 27 (28)
T ss_dssp ECTTSCEEEETT
T ss_pred ccCcccEEeccC
Confidence 488999998774
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=23.27 E-value=33 Score=17.12 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 034731 41 IAMAGIFLICIPIAMKSAEL 60 (85)
Q Consensus 41 i~~v~i~~~~~~~~~~Sa~~ 60 (85)
|+++....-.+++|++|.++
T Consensus 10 valvial~pg~lafrlatel 29 (31)
T d1jb0m_ 10 VALVIALLPAVLAFRLSTEL 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44454455567788888764
No 5
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.80 E-value=34 Score=19.49 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=18.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHh
Q 034731 29 NCRPKHWKRNTAIAMAGIFLICIPIAM 55 (85)
Q Consensus 29 ~~~P~nWk~NTai~~v~i~~~~~~~~~ 55 (85)
++.|.+|-+|.-+.+.|..+=...++.
T Consensus 27 ~ASP~gW~~sK~lvfsG~~~W~~LV~l 53 (62)
T d2axtz1 27 YASPQDWDRSKQLIFLGSGLWIALVLV 53 (62)
T ss_dssp HHCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCcccccCceEEEchhHHHHHHHH
Confidence 457899999888877776655444443
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=22.01 E-value=10 Score=22.06 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhcccc
Q 034731 44 AGIFLICIPIAMKSAELE 61 (85)
Q Consensus 44 v~i~~~~~~~~~~Sa~~E 61 (85)
++.+++++.+|++.+++.
T Consensus 31 ~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 31 PAILMAVGFAWKYRASNK 48 (91)
T ss_dssp HHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHhhheeeeccCC
Confidence 344445556666654443
No 7
>d4cpai_ g.3.2.1 (I:) Carboxypeptidase A inhibitor {Potato [TaxId: 4113]}
Probab=20.27 E-value=18 Score=18.84 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=6.7
Q ss_pred CCCCCCCC
Q 034731 24 MPGGPNCR 31 (85)
Q Consensus 24 PaGGW~~~ 31 (85)
=+|||+||
T Consensus 17 csg~~fcq 24 (37)
T d4cpai_ 17 CSGAWFCQ 24 (37)
T ss_dssp SCCCSSCC
T ss_pred ccchHHHH
Confidence 37999998
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=19.33 E-value=61 Score=18.57 Aligned_cols=11 Identities=18% Similarity=0.014 Sum_probs=4.6
Q ss_pred HHHHHHHhhhc
Q 034731 48 LICIPIAMKSA 58 (85)
Q Consensus 48 ~~~~~~~~~Sa 58 (85)
++++.++++..
T Consensus 46 ~l~~~~~~~r~ 56 (100)
T d3dtub2 46 LILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHBT
T ss_pred HHHHHhhhhhc
Confidence 33344444443
No 9
>d1vlfm1 b.52.2.2 (M:729-875) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]}
Probab=16.58 E-value=30 Score=20.76 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=16.0
Q ss_pred CCceecCCCCCCCCCcchhh
Q 034731 18 RAKVWSMPGGPNCRPKHWKR 37 (85)
Q Consensus 18 Pk~VWSPaGGW~~~P~nWk~ 37 (85)
|-.|..+.|+||.+|..+..
T Consensus 83 pg~V~~~~~~~~~~~~~~~~ 102 (147)
T d1vlfm1 83 PGTVHSYESCAVYDPLGTAG 102 (147)
T ss_dssp TTEEECCSCCCCCCBSSSTT
T ss_pred CCcEEeeecccccccCCccc
Confidence 56788999999998876654
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.95 E-value=51 Score=17.88 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=13.1
Q ss_pred chhhhHHHH-HHHHHHHHHHHHhhhcccc
Q 034731 34 HWKRNTAIA-MAGIFLICIPIAMKSAELE 61 (85)
Q Consensus 34 nWk~NTai~-~v~i~~~~~~~~~~Sa~~E 61 (85)
+||.=.++. ++.|+++...+..+-+|++
T Consensus 4 ~~R~~~~~~~~~~i~i~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLLAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 465433332 2333444445556666654
Done!