Query 034732
Match_columns 85
No_of_seqs 103 out of 412
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1id3_C Histone H2A.1; nucleoso 100.0 2.1E-29 7.2E-34 174.3 5.2 66 17-82 9-74 (131)
2 1f66_C Histone H2A.Z; nucleoso 100.0 1.2E-29 4.2E-34 174.9 3.7 72 11-82 5-77 (128)
3 2f8n_G Core histone macro-H2A. 100.0 1.3E-29 4.4E-34 173.1 3.0 66 17-82 6-71 (120)
4 2nqb_C Histone H2A; nucleosome 99.9 3E-29 1E-33 171.9 3.2 67 16-82 6-72 (123)
5 1tzy_A Histone H2A-IV; histone 99.9 3.6E-29 1.2E-33 172.8 3.3 67 16-82 8-74 (129)
6 2f8n_K Histone H2A type 1; nuc 99.9 1E-28 3.5E-33 174.5 3.5 66 17-82 28-93 (149)
7 2jss_A Chimera of histone H2B. 99.9 1.8E-24 6.1E-29 156.1 4.1 61 22-82 94-155 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 4.7E-23 1.6E-27 174.8 3.0 60 23-83 94-153 (1049)
9 1jfi_A Transcription regulator 99.6 3.2E-16 1.1E-20 102.8 4.9 58 25-82 3-60 (98)
10 1tzy_D Histone H4-VI; histone- 99.2 5.7E-12 1.9E-16 83.0 4.7 61 19-82 17-77 (103)
11 2yfw_B Histone H4, H4; cell cy 99.2 6.9E-12 2.4E-16 82.7 3.9 60 20-82 18-77 (103)
12 1n1j_B NF-YC; histone-like PAI 99.2 1.8E-11 6E-16 79.8 4.3 55 28-82 14-68 (97)
13 4g92_C HAPE; transcription fac 99.1 3.4E-11 1.2E-15 81.2 4.0 52 31-82 39-90 (119)
14 2byk_A Chrac-16; nucleosome sl 99.0 3.2E-10 1.1E-14 78.8 3.8 61 21-81 7-68 (140)
15 1f1e_A Histone fold protein; a 98.4 1.1E-07 3.8E-12 67.0 3.4 54 28-82 77-130 (154)
16 1id3_B Histone H4; nucleosome 97.5 0.00014 4.8E-09 47.7 4.3 55 23-80 20-74 (102)
17 1ku5_A HPHA, archaeal histon; 96.9 0.00069 2.4E-08 41.0 3.0 48 33-81 6-53 (70)
18 1b67_A Protein (histone HMFA); 96.8 0.001 3.5E-08 39.8 3.0 49 33-82 2-50 (68)
19 1n1j_A NF-YB; histone-like PAI 94.4 0.034 1.2E-06 35.0 3.2 51 30-80 5-56 (93)
20 1f1e_A Histone fold protein; a 93.8 0.053 1.8E-06 37.9 3.5 50 33-82 4-53 (154)
21 2hue_C Histone H4; mini beta s 93.2 0.11 3.9E-06 32.3 3.9 46 34-80 11-56 (84)
22 2byk_B Chrac-14; nucleosome sl 92.9 0.092 3.2E-06 35.3 3.4 50 31-80 7-57 (128)
23 3b0c_W CENP-W, centromere prot 90.9 0.23 7.7E-06 30.2 3.3 44 33-76 4-51 (76)
24 1taf_B TFIID TBP associated fa 89.5 0.35 1.2E-05 29.7 3.3 48 33-81 6-53 (70)
25 1taf_A TFIID TBP associated fa 82.2 2.1 7.3E-05 25.9 4.1 42 38-80 6-47 (68)
26 2nqb_D Histone H2B; nucleosome 78.4 1.7 5.7E-05 29.5 3.0 48 34-82 35-82 (123)
27 3b0c_T CENP-T, centromere prot 69.1 3.3 0.00011 27.0 2.6 49 31-80 5-53 (111)
28 1jfi_B DR1 protein, transcript 68.8 3.5 0.00012 29.3 2.8 51 28-78 10-64 (179)
29 1tzy_B Histone H2B; histone-fo 66.0 4.6 0.00016 27.4 2.8 50 32-82 36-85 (126)
30 4dra_E Centromere protein X; D 60.4 9.4 0.00032 24.0 3.4 51 29-80 8-61 (84)
31 3b0b_C CENP-X, centromere prot 58.8 7.1 0.00024 24.3 2.6 50 31-81 6-58 (81)
32 2jss_A Chimera of histone H2B. 53.6 11 0.00037 26.5 3.1 45 38-82 8-52 (192)
33 2l5a_A Histone H3-like centrom 41.2 34 0.0012 25.3 4.3 41 39-80 167-207 (235)
34 2ly8_A Budding yeast chaperone 35.6 59 0.002 21.6 4.4 32 49-80 62-93 (121)
35 1bh9_B TAFII28; histone fold, 27.0 43 0.0015 20.9 2.4 46 34-80 17-62 (89)
No 1
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.95 E-value=2.1e-29 Score=174.29 Aligned_cols=66 Identities=59% Similarity=0.900 Sum_probs=58.0
Q ss_pred CCCCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 17 GGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 17 ~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
++.+++.+|+|+||||||||+||+|+|++++|++||+++|||||+||||||++||||||+|+|+++
T Consensus 9 ~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~ 74 (131)
T 1id3_C 9 GSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDN 74 (131)
T ss_dssp -------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455667899999999999999999999999999999999999999999999999999999999876
No 2
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.95 E-value=1.2e-29 Score=174.92 Aligned_cols=72 Identities=53% Similarity=0.664 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCCCCccccccccccccchhhhhccCCcc-ccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 11 AGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYS-QRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 11 ~~~~~~~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~-~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
++++++++.+++.+|+|+||||||||+||||+|++++|+ +||+++|||||+||||||++||||||||+|+++
T Consensus 5 ~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~ 77 (128)
T 1f66_C 5 KAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 77 (128)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666778899999999999999999999999988 599999999999999999999999999999886
No 3
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.95 E-value=1.3e-29 Score=173.10 Aligned_cols=66 Identities=56% Similarity=0.832 Sum_probs=60.2
Q ss_pred CCCCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 17 GGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 17 ~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
++.+++++|+|+|+||||||+||+|+|++++|++||+++|||||+||||||++||||||||+|+++
T Consensus 6 ~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~ 71 (120)
T 2f8n_G 6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDN 71 (120)
T ss_dssp ----CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445667899999999999999999999999999999999999999999999999999999999876
No 4
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.95 E-value=3e-29 Score=171.89 Aligned_cols=67 Identities=66% Similarity=0.918 Sum_probs=58.7
Q ss_pred CCCCCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 16 GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 16 ~~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+++.+++++|+|+|+||||||+||+|+|++++|++||+++|||||+||||||++||||||+|+|+++
T Consensus 6 ~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~ 72 (123)
T 2nqb_C 6 GGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 72 (123)
T ss_dssp -------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556678899999999999999999999999999999999999999999999999999999999875
No 5
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.95 E-value=3.6e-29 Score=172.78 Aligned_cols=67 Identities=61% Similarity=0.926 Sum_probs=59.6
Q ss_pred CCCCCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 16 GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 16 ~~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+++.+++.+|+|+|+||||||+||+|+|++++|++||+++|||||+||||||++||||||+|.|+++
T Consensus 8 ~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~ 74 (129)
T 1tzy_A 8 GGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDN 74 (129)
T ss_dssp ------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556678899999999999999999999999999999999999999999999999999999999875
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.95 E-value=1e-28 Score=174.46 Aligned_cols=66 Identities=61% Similarity=0.909 Sum_probs=58.8
Q ss_pred CCCCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 17 GGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 17 ~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
++.+++.+|+|+||||||||+||+|+|++++|++||+++|||||+||||||++||||||+|+|+++
T Consensus 28 ~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~ 93 (149)
T 2f8n_K 28 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDN 93 (149)
T ss_dssp ------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556778899999999999999999999999999999999999999999999999999999999876
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.89 E-value=1.8e-24 Score=156.13 Aligned_cols=61 Identities=54% Similarity=0.720 Sum_probs=58.0
Q ss_pred CCCCccccccccccccchhhhhccCCcc-ccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 22 KPVSRSVKAGLQFPVGRIGRYLKKGRYS-QRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 22 k~~s~SsragLqFpV~rv~r~Lr~~~~~-~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+.+++|+|+||||||+||+|+|++++++ +||+++|||||+||||||++||||||||+|+++
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~ 155 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDL 155 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999897 799999999999999999999999999999875
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.86 E-value=4.7e-23 Score=174.78 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=57.3
Q ss_pred CCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 23 PVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 23 ~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
..++|+|||||||||||||+| +|+|++|||++||||||||||||++||||||||+|+++.
T Consensus 94 ~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~ 153 (1049)
T 3ksy_A 94 IEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIR 153 (1049)
T ss_dssp HTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999 999999999999999999999999999999999999874
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.62 E-value=3.2e-16 Score=102.84 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=49.5
Q ss_pred CccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 25 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 25 s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+.+.+++++|||+||+|.||.+.+..||++.||||+++++||++.||+++|+|.|+++
T Consensus 3 ~~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~ 60 (98)
T 1jfi_A 3 SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR 60 (98)
T ss_dssp -------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999999999999999999999999999999865
No 10
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.25 E-value=5.7e-12 Score=83.03 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=53.1
Q ss_pred CCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 19 PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 19 ~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
++.++.++++.+| ||+..|+|+++.+.+ .||+..+.++|+.+|||++.+|++.|.++|+.+
T Consensus 17 kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 17 KRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp ----CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556678999999 999999999999876 899999999999999999999999999998764
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.22 E-value=6.9e-12 Score=82.72 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 20 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 20 ~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+.++.++++.+| ||+..|+|+++.+.+ .||+..+.++|+.+|||++.+|++.|.++|+.+
T Consensus 18 r~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 18 RHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp --------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556677899999 999999999999877 899999999999999999999999999998764
No 12
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.18 E-value=1.8e-11 Score=79.81 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=47.1
Q ss_pred ccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 28 VKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 28 sragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
.-.+++||++||+|.||.+.+..||++.|++|+++++||++.++++.|++.|..+
T Consensus 14 ~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~ 68 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDN 68 (97)
T ss_dssp ------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457899999999999999998999999999999999999999999999998764
No 13
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.13 E-value=3.4e-11 Score=81.23 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=49.1
Q ss_pred cccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 31 GLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 31 gLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
--+||++||+|.||.+.+..+|++.|++|+++++||++.+|+++|++.|.++
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~ 90 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDN 90 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3469999999999999999999999999999999999999999999999876
No 14
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=98.97 E-value=3.2e-10 Score=78.75 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=37.0
Q ss_pred CCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhh-hc
Q 034732 21 KKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYA-AC 81 (85)
Q Consensus 21 ~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A-~~ 81 (85)
.++.+++.+.+++||++||++.||......+|++.|+++++.++|+++.++++.|.+.| ..
T Consensus 7 ~k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~ 68 (140)
T 2byk_A 7 QPPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQ 68 (140)
T ss_dssp ----------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999888999999999999999999999999999998 44
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.44 E-value=1.1e-07 Score=67.04 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=50.7
Q ss_pred ccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 28 VKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 28 sragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
.+.+|.||+..|.|++|++ ...|||+.|.++|+.+||++..+|.+.|.++|+.+
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha 130 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADED 130 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999998 78999999999999999999999999999998754
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.45 E-value=0.00014 Score=47.67 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=43.5
Q ss_pred CCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 23 PVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 23 ~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
...+-+-.+ +|..-|.|+++.+- ..||+..+..-|+-+|||...+|++-|-.+++
T Consensus 20 k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~ 74 (102)
T 1id3_B 20 KILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTE 74 (102)
T ss_dssp ----CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 78889999999863 48999999999999999999999998877765
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.89 E-value=0.00069 Score=40.96 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=43.8
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAAC 81 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~ 81 (85)
.||...|+|++|++ -..|++..+...|..++|+.+.+|++-|..+|.-
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~h 53 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH 53 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999996 4689999999999999999999999999888763
No 18
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=96.77 E-value=0.001 Score=39.79 Aligned_cols=49 Identities=31% Similarity=0.438 Sum_probs=43.4
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
.+|..+|.|++|+. ...||++.|...|+-++|++..+|.+-|...|..+
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~ 50 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHA 50 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999998 66899999999999999999999999888777543
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=94.37 E-value=0.034 Score=34.99 Aligned_cols=51 Identities=8% Similarity=0.150 Sum_probs=40.7
Q ss_pred ccccccccchhhhhccC-CccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 30 AGLQFPVGRIGRYLKKG-RYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 30 agLqFpV~rv~r~Lr~~-~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
..+.+|..+|.|.+|+. .-..||+..|..-|+-+.|....+|.+-|...|.
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~ 56 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCH 56 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999996 4448999999999999998777777776666554
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=93.78 E-value=0.053 Score=37.89 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=44.0
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
-+|..-|.|++|++--..|||..|...|+.++|.+..+|..-|.+.|...
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha 53 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDAS 53 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37888999999998445999999999999999999999999998888653
No 21
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=93.16 E-value=0.11 Score=32.29 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=40.9
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
+|..-|.|+++.+. ..||+..+..-|+-+|||...+|++-|-.+++
T Consensus 11 ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ 56 (84)
T 2hue_C 11 ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTE 56 (84)
T ss_dssp SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999864 48999999999999999999999999887765
No 22
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=92.87 E-value=0.092 Score=35.32 Aligned_cols=50 Identities=26% Similarity=0.189 Sum_probs=35.4
Q ss_pred cccccccchhhhhcc-CCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 31 GLQFPVGRIGRYLKK-GRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 31 gLqFpV~rv~r~Lr~-~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
.+.||+++|.|.+|+ ..-..+|+..|...|+-..|-+..+|-..|...|.
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~ 57 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAH 57 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999995 45568999999999999888555555555544443
No 23
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=90.90 E-value=0.23 Score=30.23 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=32.4
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHH----HHHHHHHHHhh
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLE----YLAAEVVLLVL 76 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLE----YLtaeILELAg 76 (85)
.+|.+.|.|.||+..-..+|+..|...+.-..| ||+.|-.++|-
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~ 51 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAF 51 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999643357999999998887666 45555444443
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=89.46 E-value=0.35 Score=29.68 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=41.2
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAAC 81 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~ 81 (85)
.+|+.-|.+..+.-. ..+|+..+..-||-.+||-..||++-|.+.++-
T Consensus 6 ~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrH 53 (70)
T 1taf_B 6 SISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNH 53 (70)
T ss_dssp CCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888743 379999999999999999999999999877653
No 25
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=82.17 E-value=2.1 Score=25.93 Aligned_cols=42 Identities=17% Similarity=-0.032 Sum_probs=35.8
Q ss_pred chhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 38 RIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 38 rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
-|++.|++. =.+|++..++.-|.-.++-.+.+||+-|-.+|.
T Consensus 6 ~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~ 47 (68)
T 1taf_A 6 VIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYAN 47 (68)
T ss_dssp HHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888884 348999999999999999999999999987764
No 26
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=78.40 E-value=1.7 Score=29.52 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=38.8
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
|. ..|++.|++-.-...|++.|.-.|-.+++.|...|..-|..-|+-|
T Consensus 35 y~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~n 82 (123)
T 2nqb_D 35 YA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYN 82 (123)
T ss_dssp SH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 3789999986444699999999999999999888888888777654
No 27
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=69.12 E-value=3.3 Score=26.96 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=37.4
Q ss_pred cccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 31 GLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 31 gLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
.+.+|-+-|.|+++.+ -..||+..+..-|.-+++....+|..-|-.+|+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~ 53 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQ 53 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999986 458999999999999999888888877766664
No 28
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=68.79 E-value=3.5 Score=29.32 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=37.1
Q ss_pred ccccccccccchhhhhccCCccccccCchhHHHHHHHH----HHHHHHHHHhhHh
Q 034732 28 VKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLE----YLAAEVVLLVLFY 78 (85)
Q Consensus 28 sragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLE----YLtaeILELAgn~ 78 (85)
.-..+.+|.+.|.|.+|+.--..||+..|...|+-+.+ ||+.+-.+++.+.
T Consensus 10 ~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~ 64 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKS 64 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567899999999999852158999999998877766 6666656655443
No 29
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=66.04 E-value=4.6 Score=27.45 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=40.4
Q ss_pred ccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 32 LQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 32 LqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
-.|.+ .|++.|++-.-...|++.|.-.|-.+++.|...|..-|..-|+-|
T Consensus 36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~n 85 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYN 85 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34655 799999996444689999999999999999888888888777654
No 30
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=60.44 E-value=9.4 Score=24.03 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=41.7
Q ss_pred cccccccccchhhhhccCCcc---ccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 29 KAGLQFPVGRIGRYLKKGRYS---QRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 29 ragLqFpV~rv~r~Lr~~~~~---~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
.++..||..-|.++|+. .+. -||+..|-.-++..|+-++.|.+..|-.+|.
T Consensus 8 ~~~~~i~~~li~ril~~-~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~ 61 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHL-HFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQ 61 (84)
T ss_dssp ---CCCCHHHHHHHHHT-TCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH-HhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999999994 333 6999999999999999999999999887776
No 31
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=58.75 E-value=7.1 Score=24.32 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=41.7
Q ss_pred cccccccchhhhhccCCcc---ccccCchhHHHHHHHHHHHHHHHHHhhHhhhc
Q 034732 31 GLQFPVGRIGRYLKKGRYS---QRVGTGAPVYLAAVLEYLAAEVVLLVLFYAAC 81 (85)
Q Consensus 31 gLqFpV~rv~r~Lr~~~~~---~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~ 81 (85)
+-.||..-|+++|+. .+. -||+..|-.-++..|+-++.|.+..|-.+|..
T Consensus 6 ~~~~~~~lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~ 58 (81)
T 3b0b_C 6 EGGFRKETVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQA 58 (81)
T ss_dssp -CCCCHHHHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456999999999987 333 69999999999999999999999999887753
No 32
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=53.59 E-value=11 Score=26.45 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=35.4
Q ss_pred chhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 38 RIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 38 rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
.|++.|++..-...|+..|..+|...++.+...|..-|..-++.|
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~ 52 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYN 52 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 688999987555889999999998888888777777776655543
No 33
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=41.24 E-value=34 Score=25.26 Aligned_cols=41 Identities=20% Similarity=0.093 Sum_probs=33.9
Q ss_pred hhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 39 IGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 39 v~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
+.|+.|.+. .+|||..+..-+..+||....+|+.-|..++.
T Consensus 167 ~~RlaRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yae 207 (235)
T 2l5a_A 167 DEEDGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTE 207 (235)
T ss_dssp CCTTSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777753 49999999999999999888999988877664
No 34
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=35.60 E-value=59 Score=21.55 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=27.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 49 SQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 49 ~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
.+|||..+..-+..+||-...+|+.-|-.++.
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yae 93 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTE 93 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999888889888776654
No 35
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=27.00 E-value=43 Score=20.90 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=35.6
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
||=..|.+++.. ...+.|+....+-|+++-.-+..||.|.|-....
T Consensus 17 f~k~~vKrl~~~-~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~ 62 (89)
T 1bh9_B 17 FPKAAIKRLIQS-ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCE 62 (89)
T ss_dssp CCHHHHHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677654 3567889889999999999999999999976544
Done!