BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034735
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis
thaliana GN=KIWI PE=1 SV=1
Length = 107
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 1 MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
MS +GKRK+E+ SD + HAP KK +K D SD SDDIVVC ISKNRRVSVRNW GK
Sbjct: 1 MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60
Query: 60 VWVDIREFYVKEGKKFPGKKGSLLSF 85
+W+DIREFYVK+GK PGKKG LS
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGISLSV 86
>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis
thaliana GN=KELP PE=1 SV=1
Length = 165
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 35 DDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLS 84
DD D+++C +S RRV+++ ++GK V IRE+Y K+GK+ P KG L+
Sbjct: 91 DDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLT 140
>sp|Q872F4|TCP4_NEUCR Putative RNA polymerase II transcriptional coactivator
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=80A10.210 PE=3
SV=1
Length = 172
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 21 GHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKG 80
G A P++ +K D D E+ NRR+S ++ V+IRE+Y GK PGKKG
Sbjct: 27 GKAQPQELTK---GSDQDGNTFWELGNNRRISSSVFRNTTLVNIREYYDAGGKLMPGKKG 83
Query: 81 SLLSF 85
LS
Sbjct: 84 ISLSL 88
>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15
OS=Gallus gallus GN=SUB1 PE=2 SV=1
Length = 126
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 18 SVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFP 76
S G A K++S D + + +I K R VSVR+++GKV +DIRE+++ +EG+ P
Sbjct: 45 SSKGAASSKQSSNRDEN-------MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKP 97
Query: 77 GKKGSLLS 84
G+KG L+
Sbjct: 98 GRKGISLN 105
>sp|P11031|TCP4_MOUSE Activated RNA polymerase II transcriptional coactivator p15 OS=Mus
musculus GN=Sub1 PE=1 SV=3
Length = 127
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGSLLSF 85
+ +I K R VSVR+++GK+ +DIRE+++ EG+ PG+KG L+
Sbjct: 63 MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNM 107
>sp|Q5R6D0|TCP4_PONAB Activated RNA polymerase II transcriptional coactivator p15
OS=Pongo abelii GN=SUB1 PE=2 SV=1
Length = 127
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGSLLS 84
+ +I K R VSVR+++GKV +DIRE+++ EG+ PG+KG L+
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 106
>sp|Q4R947|TCP4_MACFA Activated RNA polymerase II transcriptional coactivator p15
OS=Macaca fascicularis GN=SUB1 PE=2 SV=1
Length = 127
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGSLLS 84
+ +I K R VSVR+++GKV +DIRE+++ EG+ PG+KG L+
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 106
>sp|P53999|TCP4_HUMAN Activated RNA polymerase II transcriptional coactivator p15 OS=Homo
sapiens GN=SUB1 PE=1 SV=3
Length = 127
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGSLLS 84
+ +I K R VSVR+++GKV +DIRE+++ EG+ PG+KG L+
Sbjct: 63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 106
>sp|Q63396|TCP4_RAT Activated RNA polymerase II transcriptional coactivator p15
OS=Rattus norvegicus GN=Sub1 PE=2 SV=3
Length = 127
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGSLLSF 85
+ +I K R VSVR+++GK+ +DIRE+++ EG+ PG+KG L+
Sbjct: 63 MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNM 107
>sp|P54000|SUB1_YEAST RNA polymerase II transcriptional coactivator SUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SUB1 PE=1 SV=1
Length = 292
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 41 VVCEISKNRRVSVRNWQGKVWVDIREFYV--KEGKKFPGKKGSLLS 84
+ ++ KN+RV+VR ++ +DIRE+Y+ G+ PGKKG L+
Sbjct: 39 AIFDLGKNKRVTVRQFRNINLIDIREYYLDSSTGEMKPGKKGISLT 84
>sp|Q9VLR5|TCP4_DROME RNA polymerase II transcriptional coactivator OS=Drosophila
melanogaster GN=Ssb-c31a PE=2 SV=1
Length = 110
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 49 RRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLSF 85
R+V + ++G+ VDIREFY K G+ PGKKG LS
Sbjct: 55 RQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSL 91
>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16A10.02 PE=1 SV=1
Length = 136
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 21 GHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKG 80
G K KT+ D + ++ +R+++ ++G +V IRE+Y K+G PGKKG
Sbjct: 10 GDKASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKG 69
Query: 81 SLLSF 85
L+
Sbjct: 70 IALNI 74
>sp|Q94045|TCP4_CAEEL Putative RNA polymerase II transcriptional coactivator
OS=Caenorhabditis elegans GN=T13F2.2 PE=3 SV=1
Length = 124
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 36 DSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKE--GKKFPGKKGSLLS 84
DSD + EI R +V ++GK +V+IRE+Y+ K P +KG LS
Sbjct: 56 DSDGNEMFEIGNLRYATVSKFKGKEYVNIREYYIDRDSQKMMPSRKGISLS 106
>sp|Q3A4F1|MUTS_PELCD DNA mismatch repair protein MutS OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=mutS PE=3 SV=1
Length = 870
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 DGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
+GH K T + +D I+ CE KN ++VR W ++
Sbjct: 724 NGHVAAKTLFATHYHELTDLILTCERVKNLNIAVREWNEQI 764
>sp|Q3YSV8|SYA_EHRCJ Alanine--tRNA ligase OS=Ehrlichia canis (strain Jake) GN=alaS PE=3
SV=2
Length = 887
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 52 SVRNWQGKVWVDIREFYVKEGKKFPG 77
SV+ +GK+WVDI+E Y G KF G
Sbjct: 442 SVQQLKGKLWVDIKEHY--GGTKFVG 465
>sp|A2C794|PNP_PROM3 Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9303) GN=pnp PE=3 SV=1
Length = 721
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 6 KRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIR 65
K+ E+ + + D +D A K ++ S DD V ++ N +V N++ +R
Sbjct: 257 KQFEQTKAERDSKLD--AIKAKTAEAIDSLKEDDAVRKSVNANSKVLSNNFKALTKKLMR 314
Query: 66 EFYVKEGKKFPGKK 79
E +K+GK+ G+K
Sbjct: 315 EQIIKQGKRVDGRK 328
>sp|Q7V606|PNP_PROMM Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain MIT 9313) GN=pnp PE=3 SV=1
Length = 723
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 6 KRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIR 65
K+ E+ + + D +D A K ++ S DD V ++ N +V N++ +R
Sbjct: 259 KQFEQTKAERDSKLD--AIKAKTAEAIDSLKEDDAVRKSVNANSKVLSNNFKALTKKLMR 316
Query: 66 EFYVKEGKKFPGKK 79
E +K+GK+ G+K
Sbjct: 317 EQIIKQGKRVDGRK 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,946,656
Number of Sequences: 539616
Number of extensions: 1250729
Number of successful extensions: 8520
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 8472
Number of HSP's gapped (non-prelim): 76
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)