Query 034735
Match_columns 85
No_of_seqs 103 out of 236
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2712 Transcriptional coacti 99.9 7.9E-27 1.7E-31 160.9 3.8 67 18-85 19-85 (108)
2 PF02229 PC4: Transcriptional 99.8 1.2E-20 2.6E-25 115.4 3.7 44 42-85 2-46 (56)
3 COG4443 Uncharacterized protei 46.8 6.7 0.00015 25.7 0.1 28 54-84 30-58 (72)
4 KOG3064 RNA-binding nuclear pr 38.0 23 0.0005 28.6 1.9 26 40-65 40-65 (303)
5 PF11006 DUF2845: Protein of u 27.8 1E+02 0.0023 19.5 3.4 28 39-66 58-85 (87)
6 PF05629 Nanovirus_C8: Nanovir 26.7 42 0.00092 24.6 1.5 19 55-76 64-82 (153)
7 COG3530 Uncharacterized protei 23.4 6.6 0.00014 25.6 -2.8 30 52-82 15-48 (71)
8 cd07999 GH7_CBH_EG Glycosyl hy 22.1 1.1E+02 0.0023 25.7 3.2 34 44-77 252-289 (386)
9 COG5129 MAK16 Nuclear protein 22.1 65 0.0014 25.9 1.9 26 40-65 39-64 (303)
10 cd02964 TryX_like_family Trypa 21.8 29 0.00064 22.5 -0.1 18 43-60 2-19 (132)
11 PF08150 FerB: FerB (NUC096) d 20.8 91 0.002 20.4 2.1 32 39-70 7-52 (76)
12 PHA01740 putative single-stran 20.6 98 0.0021 22.9 2.4 32 54-85 24-58 (158)
13 PF11325 DUF3127: Domain of un 20.6 94 0.002 20.5 2.2 16 52-67 66-81 (84)
No 1
>KOG2712 consensus Transcriptional coactivator [Transcription]
Probab=99.93 E-value=7.9e-27 Score=160.93 Aligned_cols=67 Identities=54% Similarity=0.880 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcEEEEeCCceEEEEeeeCCceEEEeEEEEecCCeecCCcceeeecC
Q 034735 18 SVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLSF 85 (85)
Q Consensus 18 ~~d~~~p~KK~~~~~~~~~~~~~~~~~l~~~rrV~V~~fkG~~~vdIRE~Y~~~Ge~~PgkKGIsL~~ 85 (85)
....++|+++..+... +++++.++|+|+++|||||++|+|+.||||||||.++|+|+||+||||||+
T Consensus 19 ~~~~~a~~~~v~k~~d-~~s~~~~i~~l~~~RrVtV~eFkGk~~VdIREyY~kdG~mlPgkKGISLs~ 85 (108)
T KOG2712|consen 19 EKKSHAPNKKVEKPKD-DDSEDDNIFNLGKNRRVTVREFKGKILVDIREYYVKDGKMLPGKKGISLSL 85 (108)
T ss_pred chhhhCCCccccCccc-CCcCccceeecCCceEEehhhcCCceEEehhHhhhccCccccCccccccCH
Confidence 4667777766665433 246667899999999999999999999999999999999999999999984
No 2
>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.
Probab=99.81 E-value=1.2e-20 Score=115.41 Aligned_cols=44 Identities=45% Similarity=0.733 Sum_probs=40.1
Q ss_pred EEEeCCceEEEEeeeCCceEEEeEEEEec-CCeecCCcceeeecC
Q 034735 42 VCEISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGSLLSF 85 (85)
Q Consensus 42 ~~~l~~~rrV~V~~fkG~~~vdIRE~Y~~-~Ge~~PgkKGIsL~~ 85 (85)
+|+++.+++|+|++|+|++||||||||.+ +|+|+||+|||||+.
T Consensus 2 ~~~~~~~~rv~v~~fkG~~~vdIRe~y~~~~g~~~P~kKGIsL~~ 46 (56)
T PF02229_consen 2 IKNLGEKRRVSVSEFKGKPYVDIREWYEKKDGEWKPTKKGISLTP 46 (56)
T ss_dssp EETTEEEEEEEEEEETTSEEEEEEEEETTSSS-EEEEEEEEEE-H
T ss_pred cccCCCeEEEEEEEeCCeEEEEEEeeEEcCCCcCcCcCCEEEcCH
Confidence 57899999999999999999999999998 999999999999973
No 3
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.79 E-value=6.7 Score=25.69 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=20.5
Q ss_pred eeeCCce-EEEeEEEEecCCeecCCcceeeec
Q 034735 54 RNWQGKV-WVDIREFYVKEGKKFPGKKGSLLS 84 (85)
Q Consensus 54 ~~fkG~~-~vdIRE~Y~~~Ge~~PgkKGIsL~ 84 (85)
-.|.|.+ -.|||.|=.+. .+-| |||+|+
T Consensus 30 vSwNg~~~KyDiR~Wspdh--~KMG-KGiTLt 58 (72)
T COG4443 30 VSWNGRPPKYDIRAWSPDH--SKMG-KGITLT 58 (72)
T ss_pred cccCCCCCcCcccccCcch--hhhc-Cceeec
Confidence 3578876 78999997663 3446 899986
No 4
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=37.95 E-value=23 Score=28.61 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=23.2
Q ss_pred cEEEEeCCceEEEEeeeCCceEEEeE
Q 034735 40 IVVCEISKNRRVSVRNWQGKVWVDIR 65 (85)
Q Consensus 40 ~~~~~l~~~rrV~V~~fkG~~~vdIR 65 (85)
.+.|.|-+.|+.||++=+|..|+-+-
T Consensus 40 R~SCPLANSrYATVre~~g~~yLymK 65 (303)
T KOG3064|consen 40 RSSCPLANSRYATVREENGVLYLYMK 65 (303)
T ss_pred cccCcCccccceeEeecCCEEEEEEe
Confidence 56799999999999999999998664
No 5
>PF11006 DUF2845: Protein of unknown function (DUF2845); InterPro: IPR021268 This bacterial family of proteins has no known function.
Probab=27.79 E-value=1e+02 Score=19.54 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=23.7
Q ss_pred CcEEEEeCCceEEEEeeeCCceEEEeEE
Q 034735 39 DIVVCEISKNRRVSVRNWQGKVWVDIRE 66 (85)
Q Consensus 39 ~~~~~~l~~~rrV~V~~fkG~~~vdIRE 66 (85)
++++.+.+.++.+.+-.|.|-.++.|+-
T Consensus 58 E~W~Yn~Gp~~~~~~l~f~~Gkl~~I~~ 85 (87)
T PF11006_consen 58 EEWTYNFGPNGFMQILTFENGKLVRIES 85 (87)
T ss_pred eEEEEeCCCCCcEEEEEEECCEEEEEEe
Confidence 3566677999999999999999999973
No 6
>PF05629 Nanovirus_C8: Nanovirus component 8 (C8) protein; InterPro: IPR008706 This family consists of a group of 17.4 kDa nanovirus proteins which are highly related to the Faba bean necrotic yellows virus component 8 protein whose function is unknown [].
Probab=26.75 E-value=42 Score=24.64 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=14.7
Q ss_pred eeCCceEEEeEEEEecCCeecC
Q 034735 55 NWQGKVWVDIREFYVKEGKKFP 76 (85)
Q Consensus 55 ~fkG~~~vdIRE~Y~~~Ge~~P 76 (85)
.-+|..+|.+|+ +||++.|
T Consensus 64 NVRG~l~vsm~~---DDG~~RP 82 (153)
T PF05629_consen 64 NVRGQLQVSMRQ---DDGVMRP 82 (153)
T ss_pred ceeeEEEEEEEc---CCCeeee
Confidence 446778888875 7899988
No 7
>COG3530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.40 E-value=6.6 Score=25.61 Aligned_cols=30 Identities=40% Similarity=0.747 Sum_probs=22.1
Q ss_pred EEeeeCCceEEEeEEEEe----cCCeecCCcceee
Q 034735 52 SVRNWQGKVWVDIREFYV----KEGKKFPGKKGSL 82 (85)
Q Consensus 52 ~V~~fkG~~~vdIRE~Y~----~~Ge~~PgkKGIs 82 (85)
-.-.|+|+++||+-|-|. ..| .-||+-|.-
T Consensus 15 PFGKYqGR~liDLPe~YLlWFarkg-FP~G~lG~L 48 (71)
T COG3530 15 PFGKYQGRVLIDLPEEYLLWFARKG-FPPGKLGRL 48 (71)
T ss_pred CcccccceeeecCCHHHHHHHHHhC-CCchHHHHH
Confidence 345799999999999664 456 667877643
No 8
>cd07999 GH7_CBH_EG Glycosyl hydrolase family 7. Glycosyl hydrolase family 7 contains eukaryotic endoglucanases (EGs) and cellobiohydrolases (CBHs) that hydrolyze glycosidic bonds using a double-displacement mechanism. This leads to a net retention of the conformation at the anomeric carbon. Both enzymes work synergistically in the degradation of cellulose,which is the main component of plant cell wall, and is composed of beta-1,4 linked glycosyl units. EG cleaves the beta-1,4 linkages of cellulose and CBH cleaves off cellobiose disaccharide units from the reducing end of the chain. In general, the O-glycosyl hydrolases are a widespread group of enzymes that hydrolyze the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycoside hydrolase family 7.
Probab=22.12 E-value=1.1e+02 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.502 Sum_probs=24.3
Q ss_pred EeCCceEEE-EeeeC---CceEEEeEEEEecCCeecCC
Q 034735 44 EISKNRRVS-VRNWQ---GKVWVDIREFYVKEGKKFPG 77 (85)
Q Consensus 44 ~l~~~rrV~-V~~fk---G~~~vdIRE~Y~~~Ge~~Pg 77 (85)
.|.-.+.+| |..|- |-.|..||.+|..+|+..|-
T Consensus 252 tVDT~k~fTVVTQFit~~~G~LteIrR~YVQ~GkvI~n 289 (386)
T cd07999 252 TVDTSKPFTVVTQFVTNDGGKLTEIKRLYIQNGKVIES 289 (386)
T ss_pred eecCCCCeEEEEEeEeCCCCCcceeeEEEEECCEEEeC
Confidence 344444444 56785 45899999999999987764
No 9
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=22.09 E-value=65 Score=25.86 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.9
Q ss_pred cEEEEeCCceEEEEeeeCCceEEEeE
Q 034735 40 IVVCEISKNRRVSVRNWQGKVWVDIR 65 (85)
Q Consensus 40 ~~~~~l~~~rrV~V~~fkG~~~vdIR 65 (85)
.+.|.|-+.|+.||+.-.|+.|+-+.
T Consensus 39 RqSCPLANSrYATVr~dngkLyLymK 64 (303)
T COG5129 39 RQSCPLANSRYATVRADNGKLYLYMK 64 (303)
T ss_pred cccCcCccCcceEEEecCCEEEEEec
Confidence 56799999999999999999998553
No 10
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=21.76 E-value=29 Score=22.55 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.3
Q ss_pred EEeCCceEEEEeeeCCce
Q 034735 43 CEISKNRRVSVRNWQGKV 60 (85)
Q Consensus 43 ~~l~~~rrV~V~~fkG~~ 60 (85)
|-|+.++.|++.+|+|++
T Consensus 2 ~~~~~~~~v~l~~~~Gk~ 19 (132)
T cd02964 2 FLLDGEGVVPVSALEGKT 19 (132)
T ss_pred ccccCCccccHHHhCCCE
Confidence 346667889999999987
No 11
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=20.84 E-value=91 Score=20.36 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred CcEEEEeCCceEEEEee--------------eCCceEEEeEEEEec
Q 034735 39 DIVVCEISKNRRVSVRN--------------WQGKVWVDIREFYVK 70 (85)
Q Consensus 39 ~~~~~~l~~~rrV~V~~--------------fkG~~~vdIRE~Y~~ 70 (85)
|.++|-|++.+||.... .+|+--=-|+..|.+
T Consensus 7 DV~IWMl~g~kRvAYaRIPa~~ilyS~~~~~~~G~~CGk~qt~flk 52 (76)
T PF08150_consen 7 DVFIWMLSGNKRVAYARIPAHDILYSEVGEEERGKFCGKIQTLFLK 52 (76)
T ss_pred cEEEEEEeCCeEEEEEEechHHEEecCCChHHcCcccCeeEEEEEE
Confidence 57899999999997543 455555555566654
No 12
>PHA01740 putative single-stranded DNA-binding protein
Probab=20.61 E-value=98 Score=22.92 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=22.2
Q ss_pred eeeCCceEEEeEEEEec--CCee-cCCcceeeecC
Q 034735 54 RNWQGKVWVDIREFYVK--EGKK-FPGKKGSLLSF 85 (85)
Q Consensus 54 ~~fkG~~~vdIRE~Y~~--~Ge~-~PgkKGIsL~~ 85 (85)
-+|+|++-|+=-+||.. +.+- .-+--+|||+|
T Consensus 24 PDf~GkInI~G~~yw~SGW~~~~~~~~~e~isLsL 58 (158)
T PHA01740 24 PHFTGKVDIRGTVYWLAGWRQEDFMSDDHYISLSL 58 (158)
T ss_pred CCcCceEeeCCEEEEeecccccccccCCceeEEEe
Confidence 46899998888899985 2222 13446899886
No 13
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=20.60 E-value=94 Score=20.49 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=13.7
Q ss_pred EEeeeCCceEEEeEEE
Q 034735 52 SVRNWQGKVWVDIREF 67 (85)
Q Consensus 52 ~V~~fkG~~~vdIRE~ 67 (85)
.-|+|.|+-|.|||-|
T Consensus 66 ~~RE~~gr~fn~i~aW 81 (84)
T PF11325_consen 66 EGREWNGRWFNSIRAW 81 (84)
T ss_pred eccEecceEeeEeEEE
Confidence 3479999999999986
Done!