Query 034735
Match_columns 85
No_of_seqs 103 out of 236
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 09:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4agh_A Mosub1, transcription c 99.9 8.8E-29 3E-33 178.0 5.4 85 1-85 1-91 (158)
2 1pcf_A P15, transcriptional co 99.9 2.4E-24 8.1E-29 136.2 5.2 44 42-85 2-46 (66)
3 4g06_A Uncharacterized protein 81.4 2.2 7.4E-05 27.5 4.1 34 48-84 31-65 (79)
4 2l3a_A Uncharacterized protein 80.4 3.1 0.0001 27.0 4.6 34 48-84 26-60 (82)
5 3pm7_A Uncharacterized protein 77.3 1.6 5.4E-05 28.2 2.5 34 48-84 24-58 (80)
6 3dmc_A NTF2-like protein; stru 66.1 8 0.00027 24.5 3.9 26 49-74 108-133 (134)
7 2ltd_A Uncharacterized protein 44.9 6.5 0.00022 25.3 0.0 34 48-84 24-58 (80)
8 3en8_A Uncharacterized NTF-2 l 31.5 76 0.0026 19.6 4.2 26 49-74 91-116 (128)
9 1ojj_A Endoglucanase I; hydrol 24.5 69 0.0023 25.8 3.7 27 51-77 267-296 (402)
10 1eg1_A Endoglucanase I; mutati 22.8 81 0.0028 25.1 3.8 31 48-78 246-283 (371)
11 2ovw_A Endoglucanase I; glycos 22.2 70 0.0024 25.8 3.3 27 51-77 267-296 (411)
12 1q1s_A Large T antigen; import 21.8 39 0.0013 17.5 1.2 12 19-30 11-22 (26)
13 2bt9_A Lectin; sugar recogniti 21.7 93 0.0032 19.8 3.3 21 50-72 4-24 (90)
No 1
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=99.95 E-value=8.8e-29 Score=177.97 Aligned_cols=85 Identities=33% Similarity=0.498 Sum_probs=46.7
Q ss_pred CCCCCccccccccc-CCCCCCCCCCCCCCCCCC-----CCCCCCCcEEEEeCCceEEEEeeeCCceEEEeEEEEecCCee
Q 034735 1 MSGKGKRKEEEEYD-SDGSVDGHAPPKKASKTD-----SSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKK 74 (85)
Q Consensus 1 ms~k~krk~~~~~~-sD~~~d~~~p~KK~~~~~-----~~~~~~~~~~~~l~~~rrV~V~~fkG~~~vdIRE~Y~~~Ge~ 74 (85)
||-|.+.+.+...+ +++..+..+|.|+++... ...+.++..+|+|+++|||+|++|+|++||||||||+++|+|
T Consensus 1 Msskkr~~~~~~~~~~~~~~~~~~~~Kk~k~~~~~~~~~~~d~~g~~~~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~ 80 (158)
T 4agh_A 1 MTSKKRARDEEAQSGGSEAETKPAPVKKAKSKASNPGGSQVDAEGNPFWEISDKRRVGISQFKKMDFINIREYYEAGGEM 80 (158)
T ss_dssp -------------------------------------CCEECTTSCEEEESSSSEEEEEEEETTEEEEEEEEEEEETTEE
T ss_pred CCcccccchhhccccccccccccCCccccccccCCCCCCccCCCCCEeEEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcC
Confidence 77777776653333 333444444445444331 122344457999999999999999999999999999999999
Q ss_pred cCCcceeeecC
Q 034735 75 FPGKKGSLLSF 85 (85)
Q Consensus 75 ~PgkKGIsL~~ 85 (85)
+||||||||++
T Consensus 81 ~PgkKGISLs~ 91 (158)
T 4agh_A 81 KPGKKGIGLTV 91 (158)
T ss_dssp EEEEEEEEEEH
T ss_pred CCcccceecCH
Confidence 99999999984
No 2
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=99.90 E-value=2.4e-24 Score=136.21 Aligned_cols=44 Identities=48% Similarity=0.763 Sum_probs=41.8
Q ss_pred EEEeCCceEEEEeeeCCceEEEeEEEE-ecCCeecCCcceeeecC
Q 034735 42 VCEISKNRRVSVRNWQGKVWVDIREFY-VKEGKKFPGKKGSLLSF 85 (85)
Q Consensus 42 ~~~l~~~rrV~V~~fkG~~~vdIRE~Y-~~~Ge~~PgkKGIsL~~ 85 (85)
+|+||++|||+|++|+|++|||||||| .++|+++||||||||+.
T Consensus 2 ~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~ 46 (66)
T 1pcf_A 2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNP 46 (66)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECH
T ss_pred eEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCH
Confidence 699999999999999999999999999 56999999999999973
No 3
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=81.36 E-value=2.2 Score=27.49 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=26.7
Q ss_pred ceEEEEeeeCCce-EEEeEEEEecCCeecCCcceeeec
Q 034735 48 NRRVSVRNWQGKV-WVDIREFYVKEGKKFPGKKGSLLS 84 (85)
Q Consensus 48 ~rrV~V~~fkG~~-~vdIRE~Y~~~Ge~~PgkKGIsL~ 84 (85)
.+-+.+-.|.|+. -+|||.|=.+. .+.| |||+|+
T Consensus 31 ~KELNlVSWN~~~pKyDIR~W~pdh--~kMg-KGITLT 65 (79)
T 4g06_A 31 TKEINRVSFNGAPAKFDIRAWSPDH--TKMG-KGITLS 65 (79)
T ss_dssp EEEEEEEEETTCCCEEEEEEECTTS--SCBC-CCEEEC
T ss_pred eEEEEEEEeCCCCCCccccccCccc--cccc-CccccC
Confidence 5778888899765 89999985543 4667 999997
No 4
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=80.42 E-value=3.1 Score=26.96 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=25.3
Q ss_pred ceEEEEeeeCCc-eEEEeEEEEecCCeecCCcceeeec
Q 034735 48 NRRVSVRNWQGK-VWVDIREFYVKEGKKFPGKKGSLLS 84 (85)
Q Consensus 48 ~rrV~V~~fkG~-~~vdIRE~Y~~~Ge~~PgkKGIsL~ 84 (85)
.+-+..-.|.|. +-+|||.|=.+ -.+=| |||+|+
T Consensus 26 ~KELNlVSWNg~~pKyDIR~Wspd--h~kMG-KGITLT 60 (82)
T 2l3a_A 26 TKEINRVSFNGAPAKFDIRAWSPD--HTKMG-KGITLS 60 (82)
T ss_dssp EEEEEEEEESSSCEEEEEEEECST--TCCCC-CCEEEC
T ss_pred eEEEEEEeECCCCCCccccccCcc--hhhcc-Cccccc
Confidence 677888889876 48999999433 23445 999997
No 5
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=77.27 E-value=1.6 Score=28.20 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=26.0
Q ss_pred ceEEEEeeeCCce-EEEeEEEEecCCeecCCcceeeec
Q 034735 48 NRRVSVRNWQGKV-WVDIREFYVKEGKKFPGKKGSLLS 84 (85)
Q Consensus 48 ~rrV~V~~fkG~~-~vdIRE~Y~~~Ge~~PgkKGIsL~ 84 (85)
.+-+.+-.|.|+. -+|||.|=.+ -.+.| |||+|+
T Consensus 24 ~KELNlVSWN~~~pKyDIR~W~pd--h~kMg-KGITLT 58 (80)
T 3pm7_A 24 RKELNLISWNGRPPKFDLREWAPD--HEKMG-KGITLT 58 (80)
T ss_dssp EEEEEEECGGGCCCEEEEEEECTT--SSSEE-EEEEEC
T ss_pred eEEEEEEEECCCCCCccccccCcc--hhhcc-CcceeC
Confidence 5678888888764 8999998544 33667 999997
No 6
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=66.12 E-value=8 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.0
Q ss_pred eEEEEeeeCCceEEEeEEEEecCCee
Q 034735 49 RRVSVRNWQGKVWVDIREFYVKEGKK 74 (85)
Q Consensus 49 rrV~V~~fkG~~~vdIRE~Y~~~Ge~ 74 (85)
..|.+-++++-.-+.+|+||..+|+.
T Consensus 108 ~~~~~f~v~dGkI~~~r~Y~d~~~~~ 133 (134)
T 3dmc_A 108 RVAVSFDVRGDKICSYREYFGSDGKS 133 (134)
T ss_dssp EEEEEEEEETTEEEEEEEEECSCSBC
T ss_pred cEEEEEEEECCEEEEEEEEECCCCCc
Confidence 35778889999999999999998864
No 7
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}
Probab=44.92 E-value=6.5 Score=25.31 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=23.7
Q ss_pred ceEEEEeeeCCce-EEEeEEEEecCCeecCCcceeeec
Q 034735 48 NRRVSVRNWQGKV-WVDIREFYVKEGKKFPGKKGSLLS 84 (85)
Q Consensus 48 ~rrV~V~~fkG~~-~vdIRE~Y~~~Ge~~PgkKGIsL~ 84 (85)
.+-+..-.|.|+. -+|||.|=.+ -.+=| |||+|+
T Consensus 24 ~KELNlVSWNg~~pKyDIR~Wspd--h~kMG-KGITLT 58 (80)
T 2ltd_A 24 RKELNRVSWNDAEPKYDIRTWSPD--HEKMG-KGITLS 58 (80)
Confidence 4566677788654 8999998444 23345 899997
No 8
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=31.51 E-value=76 Score=19.63 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=21.6
Q ss_pred eEEEEeeeCCceEEEeEEEEecCCee
Q 034735 49 RRVSVRNWQGKVWVDIREFYVKEGKK 74 (85)
Q Consensus 49 rrV~V~~fkG~~~vdIRE~Y~~~Ge~ 74 (85)
.-|.|-+|++-.-+.+|+||.+.++.
T Consensus 91 ~~~~v~~v~dGkI~~~~~y~~~~~~~ 116 (128)
T 3en8_A 91 YTVSIMEFRNGKVVHETQYFSDPFEA 116 (128)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCC
T ss_pred EEEEEEEEcCCEEEEEEEeCCCCCCC
Confidence 55788889988999999999986653
No 9
>1ojj_A Endoglucanase I; hydrolase, cellulose degradation, glycosynthase; HET: BGC GAL GLC NAG; 1.4A {Humicola insolens} SCOP: b.29.1.10 PDB: 1oji_A* 1ojk_A* 1dym_A* 1a39_A* 2a39_A*
Probab=24.47 E-value=69 Score=25.78 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEeeeCC---ceEEEeEEEEecCCeecCC
Q 034735 51 VSVRNWQG---KVWVDIREFYVKEGKKFPG 77 (85)
Q Consensus 51 V~V~~fkG---~~~vdIRE~Y~~~Ge~~Pg 77 (85)
-.|..|-+ -.|..||.||..+|+..|-
T Consensus 267 TVVTQFit~~~G~L~EIrR~YVQ~GkvI~n 296 (402)
T 1ojj_A 267 TVVTQFLANRRGKLEKIHRFYVQDGKVIES 296 (402)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTEEECC
T ss_pred EEEeeeecCCCCCcceeeEEEEECCEEEeC
Confidence 33455754 5899999999999987754
No 10
>1eg1_A Endoglucanase I; mutation, cellulose degradation; HET: NAG; 3.60A {Hypocrea jecorina} SCOP: b.29.1.10
Probab=22.81 E-value=81 Score=25.13 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=22.8
Q ss_pred ceEEE-EeeeCC------ceEEEeEEEEecCCeecCCc
Q 034735 48 NRRVS-VRNWQG------KVWVDIREFYVKEGKKFPGK 78 (85)
Q Consensus 48 ~rrV~-V~~fkG------~~~vdIRE~Y~~~Ge~~Pgk 78 (85)
.+.+| |..|-+ -.|..||.+|..+|+..|-.
T Consensus 246 ~k~fTVVTQFit~d~t~~G~L~EIrR~YVQ~GkvI~n~ 283 (371)
T 1eg1_A 246 SKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSA 283 (371)
T ss_dssp TSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEECCCS
T ss_pred CCCeEEEeeeecCCCCCCCccceeeEEEEECCEEEeCC
Confidence 34444 456865 48999999999999987653
No 11
>2ovw_A Endoglucanase I; glycosyl hydrolase, complexed with cellobio glycosylated protein, hydrolase; HET: NAG CBI; 2.30A {Fusarium oxysporum} SCOP: b.29.1.10 PDB: 3ovw_A* 4ovw_A* 1ovw_A*
Probab=22.17 E-value=70 Score=25.83 Aligned_cols=27 Identities=7% Similarity=0.308 Sum_probs=20.4
Q ss_pred EEEeeeCC---ceEEEeEEEEecCCeecCC
Q 034735 51 VSVRNWQG---KVWVDIREFYVKEGKKFPG 77 (85)
Q Consensus 51 V~V~~fkG---~~~vdIRE~Y~~~Ge~~Pg 77 (85)
-.|..|-+ -.|..||.||..+|+..|-
T Consensus 267 TVVTQFit~~~G~L~EIrR~YVQ~GkvI~n 296 (411)
T 2ovw_A 267 TVTSQFVANKQGDLIELHRHYIQDNKVIES 296 (411)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTEEEEC
T ss_pred EEEeeeecCCCCCcceeeEEEEECCEEEeC
Confidence 33455754 5899999999999987653
No 12
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=21.81 E-value=39 Score=17.51 Aligned_cols=12 Identities=50% Similarity=0.706 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCC
Q 034735 19 VDGHAPPKKASK 30 (85)
Q Consensus 19 ~d~~~p~KK~~~ 30 (85)
....+||||+++
T Consensus 11 s~~sTPPKkKrk 22 (26)
T 1q1s_A 11 AQHAAPPKKKRK 22 (26)
T ss_pred ccccCCCccccc
Confidence 344567766655
No 13
>2bt9_A Lectin; sugar recognition, beta-propeller; HET: MFU; 0.94A {Ralstonia solanacearum} PDB: 2bs5_A* 2bs6_A* 3zw0_A* 3zw1_B* 3zw2_A* 3zwe_A* 3zzv_A* 3zw0_B* 3zw1_A*
Probab=21.65 E-value=93 Score=19.83 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=15.0
Q ss_pred EEEEeeeCCceEEEeEEEEecCC
Q 034735 50 RVSVRNWQGKVWVDIREFYVKEG 72 (85)
Q Consensus 50 rV~V~~fkG~~~vdIRE~Y~~~G 72 (85)
.+..-.|.+. ..||-||..++
T Consensus 4 ~lAAt~w~~~--~~IRVYy~~~~ 24 (90)
T 2bt9_A 4 QTAATSWGTV--PSIRVYTANNG 24 (90)
T ss_dssp EEEEEEETTT--TEEEEEEEETT
T ss_pred cEEEEecCCC--CeEEEEEcCCC
Confidence 4566788777 59999993244
Done!