BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034745
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
Length = 267
Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 75/85 (88%)
Query: 1 MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60
MS+QDET I ANDAT+KDMEGAAVAYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL
Sbjct: 183 MSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLT 242
Query: 61 AVTAALEQSVSQVIDFINGKRFSEL 85
VTAALE + ++VI+FING+ S+L
Sbjct: 243 VVTAALEGTATKVINFINGRNLSDL 267
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE
pdb|3BSF|B Chain B, Crystal Structure Of The MtaSAH NUCLEOSIDASE
Length = 254
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 75/85 (88%)
Query: 1 MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60
MS DE SITANDAT+KDMEGAAVAYVAD+FKVP I +K VTD+VDG++PT+EEF++NL
Sbjct: 170 MSPHDEESITANDATVKDMEGAAVAYVADIFKVPTILIKGVTDIVDGNRPTSEEFLENLA 229
Query: 61 AVTAALEQSVSQVIDFINGKRFSEL 85
AVTA L++S+++VIDFI+GK S+L
Sbjct: 230 AVTAKLDESLTKVIDFISGKCLSDL 254
>pdb|3DP9|A Chain A, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
pdb|3DP9|C Chain C, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
Length = 231
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTA-EEFM 56
+ME +A+A FKVP + V+A++D+ D + P + EEF+
Sbjct: 173 EMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFL 212
>pdb|4G89|A Chain A, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
pdb|4G89|B Chain B, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
Length = 237
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTA-EEFM 56
+ME A+A+V FKVP + V+A++D+ D + EEF+
Sbjct: 177 EMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFL 216
>pdb|4FFS|A Chain A, Crystal Structure Of
5'-MethylthioadenosineS-Adenosylhomocysteine
Nucleosidase From Helicobacter Pylori With
Butyl-Thio-Dadme- Immucillin-A
Length = 239
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 4 QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTA-EEFMQNLVAV 62
+ E ++ A+ +MEGA+VA+V F VP +++++D D + +EF++
Sbjct: 168 RKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHT 227
Query: 63 TAALEQSV 70
+A +S+
Sbjct: 228 SAKFLKSM 235
>pdb|3NM4|A Chain A, Helicobacter Pylori Mtan
pdb|3NM4|B Chain B, Helicobacter Pylori Mtan
pdb|3NM5|A Chain A, Helicobacter Pylori Mtan Complexed With Formycin A
pdb|3NM5|B Chain B, Helicobacter Pylori Mtan Complexed With Formycin A
pdb|3NM6|B Chain B, Helicobacter Pylori Mtan Complexed With Adenine And Tris
Length = 230
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 4 QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 46
+ E ++ A+ +MEGA+VA+V F VP +++++D D
Sbjct: 159 RKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNAD 201
>pdb|4GMH|A Chain A, Crystal Structure Of Staphylococcus Aureus
5'-MethylthioadenosineS- Adenosylhomocysteine
Nucleosidase
Length = 230
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTA-EEFMQN-LVAVTAALEQSVSQV 73
+ME A+A F VP + V+AV+DL +G+ + E F++ V+ + +E VSQ+
Sbjct: 173 EMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL 230
>pdb|3BL6|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'-
MethylthioadenosineS-Adenosylhomocysteine Nucleosidase
In Complex With Formycin A
Length = 230
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTA-EEFMQN-LVAVTAALEQSVSQV 73
+ME A+A F VP + V+AV+DL +G+ + E F++ V+ + +E VSQ+
Sbjct: 173 EMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL 230
>pdb|3O4V|A Chain A, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
COMPLEX WITH (4- Chlorophenyl)thio-Dadme-Imma
pdb|3O4V|B Chain B, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
COMPLEX WITH (4- Chlorophenyl)thio-Dadme-Imma
Length = 234
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVD 46
+ME A+A+V F VP + V+A++D+ D
Sbjct: 174 EMEATAIAHVCHNFNVPFVVVRAISDVAD 202
>pdb|1Z5N|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE GLU12GLN
Mutant Complexed With 5-Methylthioribose And Adenine
pdb|1Z5N|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE GLU12GLN
Mutant Complexed With 5-Methylthioribose And Adenine
Length = 242
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVD 46
+ME A+A+V F VP + V+A++D+ D
Sbjct: 182 EMEATAIAHVCHNFNVPFVVVRAISDVAD 210
>pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1JYS|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1NC3|A Chain A, Crystal Structure Of E. Coli Mta/adohcy Nucleosidase
Complexed With Formycin A (fma)
pdb|1NC3|B Chain B, Crystal Structure Of E. Coli Mta/adohcy Nucleosidase
Complexed With Formycin A (fma)
pdb|1NC1|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Complexed With 5'-Methylthiotubercidin (Mth)
pdb|1NC1|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Complexed With 5'-Methylthiotubercidin (Mth)
pdb|1Y6Q|A Chain A, Cyrstal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Dadme-Imma
pdb|1Y6Q|B Chain B, Cyrstal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Dadme-Imma
pdb|1Y6R|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Imma.
pdb|1Y6R|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Imma.
pdb|1Z5P|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE WITH A
LIGAND-Free Purine Binding Site
pdb|3DF9|A Chain A, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
Complex With Bnt-Dadmeimma
pdb|3DF9|B Chain B, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
Complex With Bnt-Dadmeimma
Length = 242
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVD 46
+ME A+A+V F VP + V+A++D+ D
Sbjct: 182 EMEATAIAHVCHNFNVPFVVVRAISDVAD 210
>pdb|1Z5O|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE ASP197ASN
Mutant Complexed With 5'-Methylthioadenosine
pdb|1Z5O|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE ASP197ASN
Mutant Complexed With 5'-Methylthioadenosine
Length = 242
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVD 46
+ME A+A+V F VP + V+A++++ D
Sbjct: 182 EMEATAIAHVCHNFNVPFVVVRAISNVAD 210
>pdb|1ZOS|A Chain A, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|B Chain B, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|C Chain C, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|D Chain D, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|E Chain E, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|F Chain F, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
Length = 230
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 18 DMEGAAVAYVADLFKVPAIFVKAVTD 43
+MEGAA+A A +P + ++A++D
Sbjct: 172 EMEGAAIAQAAHTLNLPVLVIRAMSD 197
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 30 LFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFIN 78
++ +P F++A G K EE+ ++V + + + + +ID N
Sbjct: 72 VYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQN 120
>pdb|3NE9|A Chain A, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NE9|B Chain B, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NE9|C Chain C, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NFD|A Chain A, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|B Chain B, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|C Chain C, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|D Chain D, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|E Chain E, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|F Chain F, Chronobacterium Ammoniagenes Acps-Coa Complex
Length = 153
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 11 ANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAV 62
A DAT + G+ ++A + F+KA + + G P E + N +
Sbjct: 50 AADATNSSLAGSRTEHLAGRWAAKEAFIKAWSQAIYGKPPVIEPDLVNFAEI 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,988,353
Number of Sequences: 62578
Number of extensions: 59155
Number of successful extensions: 182
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 22
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)