Query 034745
Match_columns 85
No_of_seqs 139 out of 1033
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02584 5'-methylthioadenosin 99.9 3.6E-21 7.8E-26 138.7 11.5 84 2-85 166-249 (249)
2 PRK14697 bifunctional 5'-methy 99.8 2.5E-20 5.4E-25 132.7 9.0 74 5-81 157-231 (233)
3 PRK06714 S-adenosylhomocystein 99.8 5.9E-20 1.3E-24 131.5 9.2 71 6-79 159-230 (236)
4 PRK07164 5'-methylthioadenosin 99.8 1.5E-19 3.3E-24 128.3 10.6 75 2-77 143-218 (218)
5 PRK06698 bifunctional 5'-methy 99.8 3.9E-19 8.4E-24 135.9 9.1 77 4-83 156-233 (459)
6 PRK06026 5'-methylthioadenosin 99.8 8.2E-19 1.8E-23 124.6 9.0 67 10-79 139-207 (212)
7 TIGR01705 MTA/SAH-nuc-hyp 5'-m 99.8 1.7E-18 3.6E-23 123.0 9.3 68 10-80 139-208 (212)
8 TIGR01704 MTA/SAH-Nsdase 5'-me 99.8 1.3E-18 2.7E-23 123.1 8.6 69 6-77 158-228 (228)
9 COG0775 Pfs Nucleoside phospho 99.7 1.1E-17 2.4E-22 119.6 9.6 69 6-77 162-233 (234)
10 PRK05634 nucleosidase; Provisi 99.7 8.6E-18 1.9E-22 116.6 8.7 60 3-63 117-177 (185)
11 PRK05584 5'-methylthioadenosin 99.7 5.5E-16 1.2E-20 108.8 9.1 69 6-77 159-229 (230)
12 PRK08236 hypothetical protein; 99.7 2.3E-16 5.1E-21 111.5 7.2 49 2-50 142-192 (212)
13 PRK07077 hypothetical protein; 99.7 4.4E-16 9.5E-21 112.2 8.4 60 4-63 128-200 (238)
14 TIGR03664 fut_nucase futalosin 99.6 2.2E-16 4.8E-21 111.7 5.9 65 5-73 157-221 (222)
15 PF01048 PNP_UDP_1: Phosphoryl 99.6 2.7E-14 5.9E-19 99.3 9.6 72 4-75 160-234 (234)
16 TIGR03468 HpnG hopanoid-associ 99.6 8.2E-15 1.8E-19 103.1 6.5 69 5-75 118-187 (212)
17 TIGR01697 PNPH-PUNA-XAPA inosi 99.6 3.7E-14 8.1E-19 101.8 9.8 71 3-77 173-246 (248)
18 PRK08666 5'-methylthioadenosin 99.5 8.4E-14 1.8E-18 100.7 10.8 78 2-79 166-246 (261)
19 TIGR01694 MTAP 5'-deoxy-5'-met 99.5 8E-14 1.7E-18 99.6 10.1 73 3-75 165-240 (241)
20 TIGR01700 PNPH purine nucleosi 99.5 2E-13 4.3E-18 98.4 10.3 73 2-77 172-247 (249)
21 PRK08202 purine nucleoside pho 99.5 2.2E-13 4.7E-18 99.3 10.5 75 2-76 194-271 (272)
22 PRK13374 purine nucleoside pho 99.4 8.9E-13 1.9E-17 94.0 8.5 48 3-50 165-212 (233)
23 PRK05819 deoD purine nucleosid 99.4 2.4E-12 5.2E-17 91.8 9.5 47 3-49 164-210 (235)
24 TIGR00107 deoD purine-nucleosi 99.4 4.1E-12 8.8E-17 90.5 8.9 68 4-75 162-230 (232)
25 PRK07115 AMP nucleosidase; Pro 99.4 6.2E-12 1.3E-16 91.4 9.7 43 5-47 170-212 (258)
26 TIGR01721 AMN-like AMP nucleos 99.3 4.2E-11 9.1E-16 87.6 10.1 71 6-79 172-247 (266)
27 TIGR01699 XAPA xanthosine phos 99.3 3.8E-11 8.3E-16 87.0 9.7 73 2-74 172-247 (248)
28 TIGR01717 AMP-nucleosdse AMP n 99.2 9.7E-11 2.1E-15 91.4 10.3 45 4-48 382-426 (477)
29 PRK08292 AMP nucleosidase; Pro 99.2 1.1E-10 2.4E-15 91.3 9.9 37 12-48 402-438 (489)
30 PRK09136 5'-methylthioadenosin 99.2 2.4E-10 5.2E-15 82.5 10.2 73 2-74 166-242 (245)
31 TIGR01719 euk_UDPppase uridine 99.0 3.6E-09 7.8E-14 77.9 8.6 63 12-77 220-284 (287)
32 TIGR01718 Uridine-psphlse urid 98.7 2.1E-07 4.5E-12 66.8 8.8 40 8-47 178-217 (245)
33 PRK11178 uridine phosphorylase 98.6 3.1E-07 6.6E-12 66.3 8.9 40 5-44 181-220 (251)
34 COG0813 DeoD Purine-nucleoside 97.7 0.00039 8.5E-09 50.3 8.4 44 3-46 165-208 (236)
35 PRK07432 5'-methylthioadenosin 97.3 0.0051 1.1E-07 45.8 10.8 78 2-79 171-252 (290)
36 PRK08931 5'-methylthioadenosin 97.3 0.0045 9.8E-08 46.0 10.3 78 2-79 168-249 (289)
37 PRK08564 5'-methylthioadenosin 97.1 0.0087 1.9E-07 43.9 10.1 78 2-79 172-252 (267)
38 PRK07823 5'-methylthioadenosin 97.1 0.0091 2E-07 43.9 10.1 79 2-80 163-245 (264)
39 TIGR01698 PUNP purine nucleoti 96.9 0.017 3.7E-07 41.8 9.4 73 2-74 161-236 (237)
40 COG2820 Udp Uridine phosphoryl 96.2 0.014 3E-07 42.8 5.5 47 4-50 177-224 (248)
41 COG0005 Pnp Purine nucleoside 95.1 0.17 3.6E-06 37.4 7.7 75 2-76 185-261 (262)
42 KOG3984 Purine nucleoside phos 84.0 5.7 0.00012 29.5 6.4 76 2-77 202-284 (286)
43 KOG3985 Methylthioadenosine ph 83.7 5.9 0.00013 29.4 6.4 77 3-79 180-260 (283)
44 PF01008 IF-2B: Initiation fac 72.7 3.6 7.8E-05 29.6 2.6 22 17-38 195-216 (282)
45 PRK06372 translation initiatio 69.6 5.2 0.00011 29.3 2.8 23 16-38 169-191 (253)
46 PF05889 SLA_LP_auto_ag: Solub 66.1 4.3 9.2E-05 31.7 1.8 18 20-37 173-190 (389)
47 PRK08535 translation initiatio 64.9 7 0.00015 29.1 2.8 21 18-38 208-228 (310)
48 PF06415 iPGM_N: BPG-independe 62.2 49 0.0011 23.9 6.6 39 22-60 49-87 (223)
49 PRK06371 translation initiatio 61.1 9 0.0002 29.2 2.8 27 14-40 231-257 (329)
50 TIGR00511 ribulose_e2b2 ribose 60.1 9.8 0.00021 28.3 2.8 22 17-38 202-223 (301)
51 PF00512 HisKA: His Kinase A ( 59.7 1.3 2.8E-05 24.7 -1.6 54 23-76 5-62 (68)
52 PRK08335 translation initiatio 58.6 11 0.00024 27.9 2.8 24 15-38 194-217 (275)
53 PRK05772 translation initiatio 58.5 10 0.00022 29.2 2.7 24 15-38 263-286 (363)
54 COG2873 MET17 O-acetylhomoseri 58.1 8.7 0.00019 30.3 2.3 22 14-37 161-182 (426)
55 TIGR00524 eIF-2B_rel eIF-2B al 57.7 11 0.00024 28.1 2.7 24 15-38 214-237 (303)
56 PRK06036 translation initiatio 56.3 12 0.00026 28.6 2.7 22 21-42 248-269 (339)
57 TIGR00512 salvage_mtnA S-methy 55.5 13 0.00027 28.3 2.8 26 15-40 242-267 (331)
58 PRK13810 orotate phosphoribosy 54.8 17 0.00036 25.3 3.1 32 14-45 77-110 (187)
59 PRK05720 mtnA methylthioribose 54.7 13 0.00029 28.3 2.8 28 15-42 242-269 (344)
60 PRK08334 translation initiatio 54.6 13 0.00029 28.6 2.7 24 19-42 259-282 (356)
61 TIGR01743 purR_Bsub pur operon 50.8 19 0.00042 26.6 3.0 29 14-42 132-161 (268)
62 PRK06381 threonine synthase; V 49.9 19 0.00041 26.4 2.9 18 21-38 75-92 (319)
63 PRK11761 cysM cysteine synthas 49.8 19 0.00041 26.3 2.9 18 21-38 75-92 (296)
64 cd06351 PBP1_iGluR_N_LIVBP_lik 49.7 9.5 0.00021 26.7 1.2 29 17-45 72-100 (328)
65 PRK09213 pur operon repressor; 49.5 21 0.00045 26.4 3.0 27 14-40 134-161 (271)
66 PF06516 NUP: Purine nucleosid 48.7 64 0.0014 24.5 5.6 35 14-48 226-267 (314)
67 TIGR01138 cysM cysteine syntha 48.6 20 0.00042 26.2 2.8 18 21-38 71-88 (290)
68 cd01561 CBS_like CBS_like: Thi 48.3 20 0.00043 25.8 2.7 18 21-38 65-82 (291)
69 smart00388 HisKA His Kinase A 48.3 13 0.00029 19.1 1.4 52 24-75 6-59 (66)
70 PF13528 Glyco_trans_1_3: Glyc 47.3 45 0.00097 23.6 4.4 38 7-45 88-127 (318)
71 PRK08813 threonine dehydratase 47.0 22 0.00047 27.1 2.9 18 21-38 93-110 (349)
72 PRK13812 orotate phosphoribosy 45.9 29 0.00062 23.7 3.1 31 14-44 62-94 (176)
73 cd06448 L-Ser-dehyd Serine deh 45.8 23 0.00051 26.1 2.8 18 21-38 63-80 (316)
74 PLN02565 cysteine synthase 44.5 24 0.00052 26.2 2.7 18 21-38 79-96 (322)
75 cd00640 Trp-synth-beta_II Tryp 44.3 27 0.00058 24.3 2.8 18 21-38 62-79 (244)
76 PRK07226 fructose-bisphosphate 44.2 26 0.00056 25.3 2.8 30 10-39 103-146 (267)
77 TIGR01136 cysKM cysteine synth 44.1 26 0.00056 25.4 2.8 18 21-38 70-87 (299)
78 PLN02970 serine racemase 43.6 27 0.00058 25.9 2.9 18 21-38 87-104 (328)
79 cd00958 DhnA Class I fructose- 43.5 58 0.0012 22.6 4.4 29 9-37 85-127 (235)
80 PRK06815 hypothetical protein; 43.4 26 0.00057 25.7 2.8 17 22-38 81-97 (317)
81 PRK07048 serine/threonine dehy 43.4 27 0.00058 25.6 2.8 18 21-38 84-101 (321)
82 TIGR01949 AroFGH_arch predicte 43.1 28 0.0006 24.9 2.8 21 20-40 124-144 (258)
83 PRK09219 xanthine phosphoribos 43.1 31 0.00067 23.9 3.0 28 14-41 54-82 (189)
84 cd06449 ACCD Aminocyclopropane 42.8 27 0.00059 25.4 2.8 18 21-38 66-83 (307)
85 cd01562 Thr-dehyd Threonine de 42.6 29 0.00063 24.9 2.9 18 21-38 77-94 (304)
86 PRK09932 glycerate kinase II; 42.3 1.6E+02 0.0036 22.9 8.1 19 22-40 306-324 (381)
87 PRK06110 hypothetical protein; 41.9 29 0.00064 25.5 2.9 18 21-38 82-99 (322)
88 TIGR02263 benz_CoA_red_C benzo 41.3 58 0.0013 24.8 4.4 27 16-46 335-361 (380)
89 PRK15116 sulfur acceptor prote 40.0 33 0.00072 25.2 2.8 36 14-49 126-163 (268)
90 PRK06721 threonine synthase; R 39.8 32 0.0007 25.8 2.8 18 21-38 87-104 (352)
91 PF00291 PALP: Pyridoxal-phosp 39.8 27 0.0006 24.7 2.4 19 21-39 68-86 (306)
92 cd06393 PBP1_iGluR_Kainate_Glu 39.7 17 0.00036 27.0 1.3 28 18-45 82-109 (384)
93 TIGR01275 ACC_deam_rel pyridox 39.7 31 0.00068 25.0 2.7 19 20-38 69-87 (311)
94 PRK06608 threonine dehydratase 39.6 33 0.00072 25.7 2.8 18 21-38 84-101 (338)
95 COG1103 Archaea-specific pyrid 39.5 24 0.00052 27.1 2.0 18 21-38 175-192 (382)
96 PRK07476 eutB threonine dehydr 39.3 33 0.00071 25.3 2.8 18 21-38 79-96 (322)
97 TIGR01139 cysK cysteine syntha 39.2 34 0.00073 24.8 2.8 18 21-38 69-86 (298)
98 COG0503 Apt Adenine/guanine ph 39.0 29 0.00063 23.8 2.3 16 25-40 69-84 (179)
99 TIGR01744 XPRTase xanthine pho 39.0 38 0.00083 23.5 2.9 28 14-41 54-82 (191)
100 PRK07409 threonine synthase; V 38.9 35 0.00075 25.5 2.8 20 18-38 88-107 (353)
101 COG1929 Glycerate kinase [Carb 38.5 27 0.00058 27.3 2.2 19 22-40 306-324 (378)
102 PRK10717 cysteine synthase A; 38.0 36 0.00079 25.0 2.8 18 21-38 76-93 (330)
103 cd01563 Thr-synth_1 Threonine 37.7 37 0.0008 24.8 2.8 18 21-38 82-99 (324)
104 TIGR00260 thrC threonine synth 37.5 30 0.00065 25.3 2.3 18 21-38 83-100 (328)
105 PRK06352 threonine synthase; V 37.4 36 0.00079 25.5 2.8 19 21-39 87-105 (351)
106 PRK07334 threonine dehydratase 37.4 37 0.00081 25.9 2.9 18 21-38 83-100 (403)
107 TIGR00381 cdhD CO dehydrogenas 37.2 2.1E+02 0.0045 22.6 7.5 40 23-62 143-183 (389)
108 PLN00011 cysteine synthase 36.8 37 0.00081 25.1 2.7 18 21-38 81-98 (323)
109 PF14907 NTP_transf_5: Unchara 36.7 30 0.00066 23.8 2.1 27 16-42 55-81 (249)
110 PRK08206 diaminopropionate amm 36.4 40 0.00086 25.9 2.9 18 21-38 128-145 (399)
111 KOG3728 Uridine phosphorylase 36.0 56 0.0012 24.5 3.5 32 4-35 230-264 (308)
112 PRK03910 D-cysteine desulfhydr 35.7 39 0.00086 24.9 2.7 18 21-38 78-95 (331)
113 PRK08638 threonine dehydratase 35.6 42 0.00091 25.1 2.8 18 21-38 87-104 (333)
114 TIGR02991 ectoine_eutB ectoine 35.5 42 0.00091 24.8 2.8 18 21-38 79-96 (317)
115 cd03572 ENTH_epsin_related ENT 35.5 78 0.0017 20.7 3.8 44 39-82 8-52 (122)
116 KOG1467 Translation initiation 35.3 32 0.0007 28.0 2.3 26 13-38 442-467 (556)
117 PRK10342 glycerate kinase I; P 35.0 2.2E+02 0.0047 22.2 8.1 19 22-40 306-324 (381)
118 TIGR00263 trpB tryptophan synt 34.9 43 0.00093 25.5 2.8 19 20-38 110-128 (385)
119 TIGR00045 glycerate kinase. Th 34.7 2.2E+02 0.0047 22.1 7.7 19 22-40 305-323 (375)
120 TIGR01127 ilvA_1Cterm threonin 34.7 44 0.00096 25.1 2.9 18 21-38 60-77 (380)
121 PRK06260 threonine synthase; V 34.3 44 0.00096 25.4 2.8 21 18-39 125-145 (397)
122 PF10087 DUF2325: Uncharacteri 34.1 40 0.00086 20.4 2.1 17 23-39 66-82 (97)
123 TIGR01747 diampropi_NH3ly diam 33.7 47 0.001 25.4 2.9 18 21-38 106-123 (376)
124 PRK08198 threonine dehydratase 33.7 47 0.001 25.2 2.9 18 21-38 82-99 (404)
125 TIGR03528 2_3_DAP_am_ly diamin 33.7 47 0.001 25.6 2.9 18 21-38 125-142 (396)
126 COG0182 Predicted translation 33.2 49 0.0011 25.6 2.9 24 21-44 251-274 (346)
127 TIGR01274 ACC_deam 1-aminocycl 33.1 48 0.001 24.6 2.8 29 11-39 63-98 (337)
128 PRK12390 1-aminocyclopropane-1 33.0 47 0.001 24.6 2.7 18 21-38 81-98 (337)
129 PRK07591 threonine synthase; V 32.4 50 0.0011 25.5 2.9 18 21-38 149-166 (421)
130 PRK08246 threonine dehydratase 32.3 51 0.0011 24.2 2.8 18 21-38 80-97 (310)
131 cd06389 PBP1_iGluR_AMPA_GluR2 32.2 35 0.00076 25.4 2.0 23 19-41 68-90 (370)
132 TIGR03844 cysteate_syn cysteat 32.1 50 0.0011 25.5 2.8 18 21-38 129-146 (398)
133 cd06447 D-Ser-dehyd D-Serine d 31.5 53 0.0012 25.5 2.9 18 21-38 146-163 (404)
134 KOG1468 Predicted translation 31.4 49 0.0011 25.4 2.6 20 20-39 255-274 (354)
135 PRK06382 threonine dehydratase 31.0 54 0.0012 25.0 2.9 18 21-38 85-102 (406)
136 TIGR02079 THD1 threonine dehyd 30.6 56 0.0012 25.1 2.9 19 21-39 76-94 (409)
137 PF10740 DUF2529: Protein of u 30.5 49 0.0011 23.1 2.3 24 16-39 92-115 (172)
138 PRK06186 hypothetical protein; 30.3 49 0.0011 23.9 2.4 16 23-38 73-88 (229)
139 PRK05638 threonine synthase; V 30.3 56 0.0012 25.3 2.8 18 21-38 124-141 (442)
140 PRK09250 fructose-bisphosphate 30.3 1.6E+02 0.0035 22.8 5.3 19 20-38 180-198 (348)
141 PRK14045 1-aminocyclopropane-1 30.1 56 0.0012 24.2 2.7 18 21-38 84-101 (329)
142 PRK08329 threonine synthase; V 29.9 59 0.0013 24.3 2.8 18 21-38 116-133 (347)
143 COG1184 GCD2 Translation initi 29.3 59 0.0013 24.6 2.7 18 21-38 210-227 (301)
144 TIGR00661 MJ1255 conserved hyp 29.3 1.2E+02 0.0026 21.9 4.3 33 6-39 86-120 (321)
145 PF02595 Gly_kinase: Glycerate 28.9 20 0.00044 27.7 0.2 21 22-42 306-326 (377)
146 TIGR01137 cysta_beta cystathio 28.8 60 0.0013 24.8 2.8 18 21-38 74-91 (454)
147 PLN02618 tryptophan synthase, 28.6 62 0.0014 25.2 2.8 19 22-40 133-151 (410)
148 PRK08639 threonine dehydratase 28.5 64 0.0014 24.8 2.9 19 21-39 85-103 (420)
149 PRK08223 hypothetical protein; 28.2 60 0.0013 24.2 2.6 32 7-38 113-150 (287)
150 PLN02556 cysteine synthase/L-3 27.8 68 0.0015 24.4 2.9 18 21-38 123-140 (368)
151 TIGR01506 ribC_arch riboflavin 27.3 94 0.002 21.2 3.2 17 21-37 78-94 (151)
152 cd06269 PBP1_glutamate_recepto 27.3 24 0.00052 23.8 0.3 29 18-46 81-109 (298)
153 cd01422 MGS Methylglyoxal synt 27.1 68 0.0015 20.3 2.4 18 20-37 89-106 (115)
154 PLN03013 cysteine synthase 27.1 70 0.0015 25.2 2.9 18 21-38 187-204 (429)
155 TIGR01415 trpB_rel pyridoxal-p 26.8 71 0.0015 24.9 2.9 19 21-39 130-148 (419)
156 cd06380 PBP1_iGluR_AMPA N-term 26.7 52 0.0011 24.1 2.1 26 19-44 73-98 (382)
157 PLN02356 phosphateglycerate ki 26.7 71 0.0015 25.1 2.8 18 21-38 116-133 (423)
158 TIGR03190 benz_CoA_bzdN benzoy 26.5 1.4E+02 0.0031 22.6 4.5 30 15-46 326-355 (377)
159 PF02142 MGS: MGS-like domain 26.5 59 0.0013 19.5 2.0 17 20-36 78-94 (95)
160 PRK06455 riboflavin synthase; 26.5 2.2E+02 0.0047 19.5 6.3 50 21-74 80-129 (155)
161 PRK08197 threonine synthase; V 26.3 73 0.0016 24.2 2.8 18 21-38 139-156 (394)
162 PRK13028 tryptophan synthase s 26.2 74 0.0016 24.7 2.9 18 21-38 123-140 (402)
163 PRK08526 threonine dehydratase 26.2 75 0.0016 24.5 2.9 18 21-38 80-97 (403)
164 cd00532 MGS-like MGS-like doma 26.0 75 0.0016 19.7 2.4 19 19-37 86-104 (112)
165 PRK02991 D-serine dehydratase; 25.9 76 0.0016 24.9 2.9 18 21-38 169-186 (441)
166 PRK06450 threonine synthase; V 25.9 78 0.0017 23.8 2.9 18 21-38 109-126 (338)
167 PRK08227 autoinducer 2 aldolas 25.8 2.7E+02 0.0059 20.5 5.8 18 20-37 128-145 (264)
168 cd06379 PBP1_iGluR_NMDA_NR1 N- 25.8 71 0.0015 23.4 2.6 25 19-43 96-120 (377)
169 KOG0064 Peroxisomal long-chain 25.6 77 0.0017 26.6 2.9 30 8-38 635-665 (728)
170 PLN02569 threonine synthase 25.6 71 0.0015 25.4 2.7 23 16-39 195-217 (484)
171 PF01527 HTH_Tnp_1: Transposas 25.5 34 0.00074 19.3 0.7 15 20-34 22-36 (76)
172 PF05225 HTH_psq: helix-turn-h 25.4 41 0.00089 17.9 1.0 15 22-36 17-31 (45)
173 cd06367 PBP1_iGluR_NMDA N-term 25.3 64 0.0014 23.4 2.3 25 21-45 79-103 (362)
174 PLN02293 adenine phosphoribosy 25.1 88 0.0019 21.6 2.8 27 14-40 66-93 (187)
175 PRK04346 tryptophan synthase s 25.1 79 0.0017 24.5 2.8 24 20-43 118-141 (397)
176 PRK12391 tryptophan synthase s 25.0 77 0.0017 24.8 2.8 18 21-38 139-156 (427)
177 cd06366 PBP1_GABAb_receptor Li 25.0 33 0.00071 24.7 0.7 28 18-45 76-103 (350)
178 cd06378 PBP1_iGluR_NMDA_NR2 N- 24.9 29 0.00062 26.1 0.4 26 20-45 77-102 (362)
179 cd06446 Trp-synth_B Tryptophan 24.8 81 0.0017 23.8 2.8 18 21-38 95-112 (365)
180 cd01917 ACS_2 Acetyl-CoA synth 24.5 62 0.0014 24.4 2.1 44 16-59 231-279 (287)
181 cd01483 E1_enzyme_family Super 24.3 86 0.0019 19.9 2.5 21 21-41 103-123 (143)
182 cd06388 PBP1_iGluR_AMPA_GluR4 24.1 63 0.0014 24.2 2.1 22 19-40 74-95 (371)
183 PF13378 MR_MLE_C: Enolase C-t 24.1 80 0.0017 19.1 2.3 18 20-37 34-51 (111)
184 PF07881 Fucose_iso_N1: L-fuco 23.9 1.5E+02 0.0033 20.7 3.8 31 32-62 2-33 (171)
185 PRK08558 adenine phosphoribosy 23.8 94 0.002 22.3 2.9 27 14-40 115-142 (238)
186 TIGR01124 ilvA_2Cterm threonin 23.7 87 0.0019 24.9 2.9 18 21-38 77-94 (499)
187 PRK12483 threonine dehydratase 23.6 84 0.0018 25.3 2.8 18 21-38 97-114 (521)
188 PRK09224 threonine dehydratase 23.6 87 0.0019 24.9 2.9 18 21-38 80-97 (504)
189 PRK13811 orotate phosphoribosy 23.4 88 0.0019 21.1 2.6 28 14-41 60-88 (170)
190 cd06392 PBP1_iGluR_delta_1 N-t 23.1 58 0.0013 25.1 1.8 21 18-38 72-92 (400)
191 TIGR02035 D_Ser_am_lyase D-ser 22.9 93 0.002 24.4 2.9 18 21-38 164-181 (431)
192 PF05159 Capsule_synth: Capsul 22.9 92 0.002 22.0 2.7 17 22-38 14-30 (269)
193 cd06547 GH85_ENGase Endo-beta- 22.5 1.6E+02 0.0035 22.3 4.0 19 21-39 48-66 (339)
194 PRK12560 adenine phosphoribosy 22.1 1E+02 0.0022 21.2 2.6 26 14-39 55-81 (187)
195 cd00755 YgdL_like Family of ac 22.0 1.4E+02 0.003 21.3 3.4 35 14-48 107-143 (231)
196 cd00082 HisKA Histidine Kinase 22.0 44 0.00095 16.8 0.7 50 23-72 7-59 (65)
197 cd06386 PBP1_NPR_C_like Ligand 21.7 71 0.0015 23.8 2.0 29 17-45 76-104 (387)
198 cd06523 GH25_PlyB-like PlyB is 21.7 1.7E+02 0.0038 19.6 3.7 13 30-42 20-32 (177)
199 PRK05434 phosphoglyceromutase; 21.6 4.1E+02 0.0088 21.5 6.3 40 22-61 131-170 (507)
200 TIGR01307 pgm_bpd_ind 2,3-bisp 21.5 4E+02 0.0086 21.6 6.2 40 22-61 127-166 (501)
201 cd06394 PBP1_iGluR_Kainate_KA1 21.0 86 0.0019 23.4 2.3 19 21-39 79-97 (333)
202 PRK02304 adenine phosphoribosy 21.0 1.4E+02 0.0029 20.0 3.1 28 14-41 55-83 (175)
203 cd06383 PBP1_iGluR_AMPA_Like N 20.9 85 0.0018 23.5 2.3 23 18-40 77-99 (368)
204 COG1179 Dinucleotide-utilizing 20.9 1.3E+02 0.0027 22.5 3.1 35 14-48 126-162 (263)
205 cd03784 GT1_Gtf_like This fami 20.7 1.1E+02 0.0023 22.5 2.7 32 13-45 106-138 (401)
206 PF01171 ATP_bind_3: PP-loop f 20.7 1.2E+02 0.0025 20.2 2.7 22 21-42 47-68 (182)
207 smart00460 TGc Transglutaminas 20.6 1.6E+02 0.0034 15.8 3.3 23 22-44 14-36 (68)
208 PRK05234 mgsA methylglyoxal sy 20.5 1E+02 0.0022 20.4 2.4 17 20-36 94-110 (142)
209 PF02796 HTH_7: Helix-turn-hel 20.2 77 0.0017 16.5 1.4 15 20-34 20-34 (45)
210 cd05014 SIS_Kpsf KpsF-like pro 20.2 1.3E+02 0.0028 18.4 2.7 22 19-40 61-82 (128)
No 1
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=99.86 E-value=3.6e-21 Score=138.70 Aligned_cols=84 Identities=75% Similarity=1.058 Sum_probs=76.4
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKR 81 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~~s~~~~~~v~~~l~~l~~~~ 81 (85)
++++.+.+++++++++|||+||+||+|+.+|+||++||+|||.++++.+++++|.+++..+++.+.+.+..+++.+++++
T Consensus 166 ~~~~~~~~~~~~a~~vDME~aAia~va~~~gvp~~~IR~ISD~~~~~~~~~~ef~~~~~~a~~~~~~~l~~~~~~~~~~~ 245 (249)
T PLN02584 166 TEQDEESIKANDATVKDMEGAAVAYVADLLKVPAIFVKAVTDIVDGDKPTAEEFLENLSAAAAALQGAVPKVLDFISGKC 245 (249)
T ss_pred CHHHHHHHHHcCCcEEechHHHHHHHHHHhCCCEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34556677788999999999999999999999999999999999876557999999999999999999999999999999
Q ss_pred ccCC
Q 034745 82 FSEL 85 (85)
Q Consensus 82 ~~~~ 85 (85)
.++|
T Consensus 246 ~~~~ 249 (249)
T PLN02584 246 LSEL 249 (249)
T ss_pred cccC
Confidence 9886
No 2
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=99.83 E-value=2.5e-20 Score=132.67 Aligned_cols=74 Identities=20% Similarity=0.375 Sum_probs=63.6
Q ss_pred HHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 034745 5 DETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFINGKR 81 (85)
Q Consensus 5 ~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l~~~~ 81 (85)
+.++.++++++++||||||+||+|+.+|+||++||+|||.+++++. +|++|.. .++.++.++++++|+++++++
T Consensus 157 ~~~l~~~~~~~~vdME~aAva~v~~~~~vpfl~iR~ISD~a~~~~~~~~~~~~~---~aa~~~~~~~~~~l~~~~~~~ 231 (233)
T PRK14697 157 KAKLIDEYAPHCTEMEGAAIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAK---TAANYCSEIIVEMLKNISSKT 231 (233)
T ss_pred HHHHHHhcCCeEEEehHHHHHHHHHHcCCCEEEEEEeccCCCCCCcCCHHHHHH---HHHHHHHHHHHHHHHHhhhcc
Confidence 3456677899999999999999999999999999999999998876 7777754 456666899999999998865
No 3
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=99.82 E-value=5.9e-20 Score=131.45 Aligned_cols=71 Identities=21% Similarity=0.156 Sum_probs=60.0
Q ss_pred HHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034745 6 ETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFING 79 (85)
Q Consensus 6 ~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l~~ 79 (85)
..+.++++++++||||||+||+|+.+++||++||+|||.++++++ +|++|... ++.+++++++++|+++.-
T Consensus 159 ~~l~~~~~a~~vdME~aAvA~vc~~~~vP~l~IR~ISD~a~~~~~~~~~~f~~~---aa~~sa~~~~~~l~~~~~ 230 (236)
T PRK06714 159 YLLHTVYGALAVDQEVAAFAYVCQINKKPFLCLKAASDQANDKTKEEQKIFKML---ACERACEHLIAFLRVYEI 230 (236)
T ss_pred HHHHHHCCCeEEEehHHHHHHHHHHhCCCEEEEEEeccCCCCccccCHHHHHHH---HHHHHHHHHHHHHHHhHh
Confidence 345567789999999999999999999999999999999998776 77777655 455567999999998864
No 4
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=99.82 E-value=1.5e-19 Score=128.30 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=62.5
Q ss_pred CHHHHHHHHhc-CCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 2 SSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 2 ~~~~~~~~~~~-~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
++++.+.++++ ++++|||||||+||||+.+++||++||+|||.+++.. ++++|.++..+++..+++++.++|+++
T Consensus 143 ~~~~~~~l~~~~~a~~vDME~aAiaqv~~~~~vpf~~ir~ISD~~~~~~-~~~~~~~~~~~a~~~~~~~v~~~l~~~ 218 (218)
T PRK07164 143 DLDKLKIIKDFIFVSFFDMEAFALAQVCFKNKVKFYCIKYVSDFIENNS-DIEIVNNNIKKGSKKALEFIFELLENI 218 (218)
T ss_pred CHHHHHHHHhcCCCcEEEchHHHHHHHHHHcCCCEEEEEEEccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555555777 8999999999999999999999999999999996543 466676777777777889999999864
No 5
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.79 E-value=3.9e-19 Score=135.94 Aligned_cols=77 Identities=21% Similarity=0.389 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 034745 4 QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFINGKRF 82 (85)
Q Consensus 4 ~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l~~~~~ 82 (85)
.+.++.++++++++||||||+||||+.+|+||++||+|||.++++++ +|++|.. .++.++++++.++|++++..+-
T Consensus 156 ~~~~l~~~~~a~~veME~aava~va~~~~vp~~~iR~iSD~a~~~~~~~~~~~~~---~a~~~~~~~v~~~l~~~~~~~~ 232 (459)
T PRK06698 156 LKAKLIDEYAPHCTEMEGAAIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAK---TAANYCSEIIVEMLKTISSKTY 232 (459)
T ss_pred HHHHHHHHcCCcEEehhhHHHHHHHHHcCCCEEEEEEeccCCCCCCccCHHHHHH---HHHHHHHHHHHHHHHHhccccc
Confidence 34556778899999999999999999999999999999999998876 7777754 4556668999999999987654
Q ss_pred c
Q 034745 83 S 83 (85)
Q Consensus 83 ~ 83 (85)
+
T Consensus 233 ~ 233 (459)
T PRK06698 233 S 233 (459)
T ss_pred c
Confidence 3
No 6
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.78 E-value=8.2e-19 Score=124.59 Aligned_cols=67 Identities=25% Similarity=0.288 Sum_probs=54.5
Q ss_pred HhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034745 10 TANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP--TAEEFMQNLVAVTAALEQSVSQVIDFING 79 (85)
Q Consensus 10 ~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~--~~~~f~~~~~~~s~~~~~~v~~~l~~l~~ 79 (85)
++++++++|||||||||||+.+++||++||+|||.+++++. +|++|...++ +++++++.+++..+..
T Consensus 139 ~~~~a~~vdMEgaAvAqVc~~~~vPfl~iR~ISD~a~~~a~~~df~~f~~~aa---~~sa~~v~~~~~~~~~ 207 (212)
T PRK06026 139 DAIDADMVDMETYAVLRACQAFGVPLIGLRGISDGAAELKHVGDWTEYLHVID---EKLAGAVDRLERALED 207 (212)
T ss_pred hhcCCeEEechHHHHHHHHHHcCCCEEEEEEEecCCCcccchhhHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 55789999999999999999999999999999999987665 4677665554 4456778888776654
No 7
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=99.77 E-value=1.7e-18 Score=123.02 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=55.8
Q ss_pred HhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034745 10 TANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP--TAEEFMQNLVAVTAALEQSVSQVIDFINGK 80 (85)
Q Consensus 10 ~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~--~~~~f~~~~~~~s~~~~~~v~~~l~~l~~~ 80 (85)
.+++++++||||||+||+|+.+|+||++||+|||.+++++. +|++|.+. ++.++++++.++|+.+...
T Consensus 139 ~~~~a~~vdME~aAia~vc~~~~vpf~~iR~ISD~a~~~~~~~df~~f~~~---aa~~sa~~v~~ll~~~~~~ 208 (212)
T TIGR01705 139 DAIAADMVDMETFACLRACQLFDVPLIGLRGISDGAADLNHVDDWTAYLDI---IDEKLADAVDRLCQAIEDG 208 (212)
T ss_pred hhCCceEEechHHHHHHHHHHcCCCEEEEEEEecCCCCccchhhHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 35689999999999999999999999999999999876554 46666555 4555578899999888653
No 8
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=99.77 E-value=1.3e-18 Score=123.11 Aligned_cols=69 Identities=23% Similarity=0.346 Sum_probs=56.9
Q ss_pred HHHHHhc-CCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 6 ETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 6 ~~~~~~~-~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
.++.+++ +++++|||+||+||+|+.+|+||++||+|||.++++++ +|++|... ++.++++++..+|+++
T Consensus 158 ~~l~~~~~~~~~vdME~aAva~va~~~~ip~~~iR~ISD~a~~~~~~~~~~~~~~---aa~~~~~~~~~~~~~~ 228 (228)
T TIGR01704 158 AKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAV---AAKQSSLMVESLVQKL 228 (228)
T ss_pred HHHHHHCCcccEecccHHHHHHHHHHhCCCEEEEEEecccCCCccccCHHHHHHH---HHHHHHHHHHHHHHhC
Confidence 4455566 69999999999999999999999999999999998775 67777655 4555578888888764
No 9
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.74 E-value=1.1e-17 Score=119.64 Aligned_cols=69 Identities=28% Similarity=0.409 Sum_probs=56.9
Q ss_pred HHHHHhc-CCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 6 ETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP--TAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 6 ~~~~~~~-~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~--~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
.++.+.+ .+.++|||||||||+|+.++|||++||+|||.+++++. +|++|...+. .+...++.++++.|
T Consensus 162 ~~~~~~~~~a~aveME~aaia~v~~~~~vP~~~ir~ISD~a~~~~~~~~~~~f~~~aa---~~s~~~~~~~~~~l 233 (234)
T COG0775 162 AKLRKAFPDALAVEMEGAAIAQVCYRFGVPFLVLRAISDIADGGADPVSFDEFLAEAA---KQSALVLLSALEKL 233 (234)
T ss_pred HHHHHHCCCcEEEEecHHHHHHHHHHhCCCEEEEEEeccCCCCcCCcccHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 4555566 69999999999999999999999999999999998754 6777776654 44577888888765
No 10
>PRK05634 nucleosidase; Provisional
Probab=99.74 E-value=8.6e-18 Score=116.58 Aligned_cols=60 Identities=32% Similarity=0.339 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHH
Q 034745 3 SQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVT 63 (85)
Q Consensus 3 ~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s 63 (85)
+++++.+++ +++++|||+||+||+|+.+|+||++||+|||.+++++. +|++|...+++.+
T Consensus 117 ~~~~~~l~~-~a~~vDME~aAva~va~~~~vPf~~iR~ISD~a~~~~~~~~~~~~~~aa~~~ 177 (185)
T PRK05634 117 TATRDRLAQ-RADLVDMEGYAVAAVAAEFGVPCRLVKHVSDSADESALGSWPEAVDASAREL 177 (185)
T ss_pred HHHHHHHhc-cCeEEecHHHHHHHHHHHhCCCEEEEEEeccCCCCcccccHHHHHHHHHHHH
Confidence 344444444 78999999999999999999999999999999998776 7777766655543
No 11
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.66 E-value=5.5e-16 Score=108.83 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=56.2
Q ss_pred HHHHHhc-CCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 6 ETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 6 ~~~~~~~-~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
..+.+.+ +++++|||+||++++|+.+|+||++||+|||.++++.+ +|++|.. .++.++.+++.++|+.+
T Consensus 159 ~~l~~~~~~~~~veME~aa~a~va~~~~vp~~~ir~vSd~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~ 229 (230)
T PRK05584 159 AAIRAEFPDALAVEMEGAAIAQVCHEFGVPFVVVRAISDTADDEAHVSFDEFLA---VAAKYSANILKRMLEKL 229 (230)
T ss_pred HHHHHhCCCCeEEechHHHHHHHHHHcCCCEEEEEEeccCCCCcccccHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 3444557 89999999999999999999999999999999998775 6666654 45555678888888764
No 12
>PRK08236 hypothetical protein; Provisional
Probab=99.66 E-value=2.3e-16 Score=111.52 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=42.0
Q ss_pred CHHH-HHHHHhc-CCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc
Q 034745 2 SSQD-ETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP 50 (85)
Q Consensus 2 ~~~~-~~~~~~~-~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~ 50 (85)
++++ ..+.++| ++.++||||||+||+|+.+|+||++||+|||.++++++
T Consensus 142 ~~~~~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~ISD~~~~rd~ 192 (212)
T PRK08236 142 TAETAAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAISNPVGPRDR 192 (212)
T ss_pred CHHHHHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEecCCCCccch
Confidence 3444 4455567 69999999999999999999999999999999998773
No 13
>PRK07077 hypothetical protein; Provisional
Probab=99.66 E-value=4.4e-16 Score=112.16 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCC------------CCCc-cHHHHHHHHHHHH
Q 034745 4 QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD------------GDKP-TAEEFMQNLVAVT 63 (85)
Q Consensus 4 ~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~------------~~~~-~~~~f~~~~~~~s 63 (85)
++..+.+.+++++|||||+|+||+|+.+|+||++||+|||.++ ++.. ++..|...+.+..
T Consensus 128 ~k~~L~~~~gA~aVDMEsaAvA~va~~~giPf~viR~ISD~a~~~LP~~~~~~~~~~g~~~~~~~l~~l~r~P 200 (238)
T PRK07077 128 AKAALHRATGALAVDMESHIAAAFAAARGLPFAACRVIVDPAWRTLPAAATAGLRDDGSTDILPILRGLARQP 200 (238)
T ss_pred HHHHHHHhCCCEEEehhHHHHHHHHHHcCCCEEEEEEEEeccCccCchhHHhhcCCCcCcCHHHHHHHHHhCh
Confidence 3455656779999999999999999999999999999999999 5555 6777765554443
No 14
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=99.65 E-value=2.2e-16 Score=111.71 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=50.8
Q ss_pred HHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 034745 5 DETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQV 73 (85)
Q Consensus 5 ~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~~s~~~~~~v~~~ 73 (85)
+..+.++++++++|||+||+|++|+.+++||++||+|||.+++.+ .++|...++.+ .+.+.+..+
T Consensus 157 ~~~l~~~~~a~aveMEsaava~va~~~~vP~~~IR~ISD~~~~~~--~~~w~~~~a~~--~~~~~~~~~ 221 (222)
T TIGR03664 157 AEALARRFGAVAENMEGFAVALAALRYGVPFLELRGISNLVGPRD--RSRWRIKEALA--ALQRAAAKL 221 (222)
T ss_pred HHHHHHhcchHHHHhhHHHHHHHHHHhCCCEEEEEeeccCCCCcc--hhhcChHHHHH--HHHHHHHhh
Confidence 345667789999999999999999999999999999999999888 45665544433 344554443
No 15
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=99.56 E-value=2.7e-14 Score=99.27 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCC--c-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 4 QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK--P-TAEEFMQNLVAVTAALEQSVSQVID 75 (85)
Q Consensus 4 ~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~--~-~~~~f~~~~~~~s~~~~~~v~~~l~ 75 (85)
.+.+++++++++++|||+++++++|+++++||++||+|||+++... + +.+++.+....++..+..++.++|+
T Consensus 160 ~~~~~~~~~g~~~vdME~aa~~~~a~~~~ip~~~i~~isD~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~ 234 (234)
T PF01048_consen 160 AEIELLQKFGADAVDMESAAVAQAARERGIPFIAIRGISDYADGGDDDEWTFEEFKEFLQLAAENAAAILEELLK 234 (234)
T ss_dssp HHHHHHHHTTEEEEESSHHHHHHHHHHTT-EEEEEEEEEEETTTTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcccccccchHHHHHHHHHHcCCCEEEEEEEEcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455677889999999999999999999999999999999876522 2 4567777777777777777777764
No 16
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.56 E-value=8.2e-15 Score=103.06 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=51.8
Q ss_pred HHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 5 DETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVID 75 (85)
Q Consensus 5 ~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~ 75 (85)
+.++.+.+++++||||+++++++|+.+|+||++||+|||.++++.+ ++..+.. .....+...++..+++
T Consensus 118 ~~~l~~~~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~~~~~~~~~~~~~--~~g~~~~~~ll~~l~~ 187 (212)
T TIGR03468 118 KAALARATGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPADRALPRAALDALR--PDGSTALAALLRGLLR 187 (212)
T ss_pred HHHHHHhcCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCCCcCchhHHHhcC--cccCccHHHHHHHHHh
Confidence 4455567899999999999999999999999999999999998876 5666543 2222333444444444
No 17
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=99.56 E-value=3.7e-14 Score=101.84 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCC--CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 3 SQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG--DKP-TAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 3 ~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~--~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
++..+.++++++++||||+++++++|+++|+||++||+|||++++ +.+ +|++|.+.+.+. .+.+.++|+++
T Consensus 173 ~~e~~~~~~~g~~~VeME~aa~a~lA~~~gv~~~~i~~Vsd~a~g~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~ 246 (248)
T TIGR01697 173 PAEIRMLRILGADAVGMSTVPEVIVARHCGIKVLAVSLITNMAAGITDVPLSHEEVLAAAAAA----AERFISLLEDI 246 (248)
T ss_pred HHHHHHHHHcCCeEEccChHHHHHHHHHCCCcEEEEEEEEecCcccCCCCCCHHHHHHHHHHH----HHHHHHHHHHH
Confidence 445567888899999999999999999999999999999999984 444 788877655433 35566665554
No 18
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=99.54 E-value=8.4e-14 Score=100.65 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=69.3
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCC--CCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD--GDKP-TAEEFMQNLVAVTAALEQSVSQVIDFIN 78 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~--~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l~ 78 (85)
|+...+.++++++++|+||+++.+++|+.+|+||++||.|||+++ ++.+ ++++|.+.+++++..+.+++.++++.+.
T Consensus 166 t~ae~~~~~~~gad~V~Me~~~e~~~A~~~gi~~~~i~~vsn~a~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~~~~~~ 245 (261)
T PRK08666 166 TAAEIRMFRILGGDLVGMTQVPEAVLARELEMCYATVAIVTNYAAGISPTKLTHSEVVELMAQNSENIKKLIMKAIELIP 245 (261)
T ss_pred CHHHHHHHHHcCCCEEccchHHHHHHHHHCCCcEEEEEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445556788899999999999999999999999999999999997 4444 8999999999999999999999999885
Q ss_pred c
Q 034745 79 G 79 (85)
Q Consensus 79 ~ 79 (85)
.
T Consensus 246 ~ 246 (261)
T PRK08666 246 K 246 (261)
T ss_pred c
Confidence 3
No 19
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=99.54 E-value=8e-14 Score=99.57 Aligned_cols=73 Identities=19% Similarity=0.116 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCC--CCc-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 3 SQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG--DKP-TAEEFMQNLVAVTAALEQSVSQVID 75 (85)
Q Consensus 3 ~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~--~~~-~~~~f~~~~~~~s~~~~~~v~~~l~ 75 (85)
++..+.++++++++||||+++++++|+.+|+|+++||+|||.++. +.+ ++++|.+.+.+....+.+++.++|.
T Consensus 165 ~~e~~~~~~~Ga~aVeME~aa~~~vA~~~gv~~~~i~~Vsd~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (241)
T TIGR01694 165 RAESRMFKSWGADIVGMTGVPEAVLARELELCYATLALVTDYDCWISADHVTAEEVEEVMGENVEKAKRILLEAIK 240 (241)
T ss_pred HHHHHHHHHcCCeEEeccHHHHHHHHHHCCCCEEEEEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344466688899999999999999999999999999999998873 444 8999999888887777777766653
No 20
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=99.51 E-value=2e-13 Score=98.38 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=56.8
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCC--CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG--DKP-TAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~--~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
++...++++++++++|+||+++++++|+++|+||++||.|||++++ +.+ +|.+|.....+. ..+.+.++|+.+
T Consensus 172 t~aE~~~~~~~gad~V~Me~aaea~~A~~~gv~~~~i~~vsd~a~~~~~~~~~~~~~v~~~~~~---~~~~~~~ll~~~ 247 (249)
T TIGR01700 172 TPAEVRLLRTLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKAAGILDYELSVHEEVMEAAKQ---AAEKLEKFVSLL 247 (249)
T ss_pred CHHHHHHHHHcCCCEEecchHHHHHHHHHcCCcEEEEEEEeecccccCcCCCCHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3445578888999999999999999999999999999999999984 344 666665554443 356666766654
No 21
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=99.51 E-value=2.2e-13 Score=99.29 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=64.8
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCC--CCc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG--DKP-TAEEFMQNLVAVTAALEQSVSQVIDF 76 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~--~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~ 76 (85)
|+...++++++++++|+||++++|++|+.+|+||++||.|||++.+ +.+ ++++|.+.+.+++..+.+++.++|..
T Consensus 194 T~aE~~~~~~~Gad~VgMe~~~ea~lA~~~gi~~~~i~~Vsd~a~~~~~~~~~~~ev~~~~~~~~~~~~~l~~~~i~~ 271 (272)
T PRK08202 194 TPAEIRMLRTLGADAVGMSTVPEVIVARHCGLKVLGISCITNLAAGISDEPLSHEEVLEVAERAAPKFGRLVKAILAR 271 (272)
T ss_pred CHHHHHHHHHcCCcEEecChHHHHHHHHHCCCcEEEEEEEeccCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444567888999999999999999999999999999999999976 344 89999999998888888888888765
No 22
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=99.42 E-value=8.9e-13 Score=94.04 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc
Q 034745 3 SQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP 50 (85)
Q Consensus 3 ~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~ 50 (85)
++..+++++++++++|||+||++|+|+.+|+||++||+|||.+++...
T Consensus 165 ~~~~~~~~~~g~~~vEME~aAl~~va~~~gip~~~i~~isD~~~~~~~ 212 (233)
T PRK13374 165 EDAIEAMERFGILGVDMEVAGLYGLAAYLGAEALAILTVSDHIITGEE 212 (233)
T ss_pred hHHHHHHHHcCCeEEehhHHHHHHHHHHcCCCEEEEEEEEeeeccCCC
Confidence 345667778899999999999999999999999999999999986553
No 23
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=99.40 E-value=2.4e-12 Score=91.75 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCC
Q 034745 3 SQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK 49 (85)
Q Consensus 3 ~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~ 49 (85)
+++.++++++++.++|||+||++++|+.+|+||++||+|||......
T Consensus 164 ~~~~~~~~~~g~~~vEME~aAva~va~~~~ip~~~i~~isd~~~~~~ 210 (235)
T PRK05819 164 PEMFDVLEKYGVLGVEMEAAALYGLAAKYGVKALTILTVSDHIVTGE 210 (235)
T ss_pred HHHHHHHHHcCCeEEeccHHHHHHHHHHhCCCEEEEEEEeeecccCC
Confidence 34667778889999999999999999999999999999999886644
No 24
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=99.37 E-value=4.1e-12 Score=90.53 Aligned_cols=68 Identities=18% Similarity=0.099 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 4 QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVID 75 (85)
Q Consensus 4 ~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~ 75 (85)
+..+.+++++++++|||+||++++|+.+|+||++||+|||....... +.+++.+...+. .++.++.+.
T Consensus 162 ~~~~~~~~~g~~~vEME~aal~~va~~~~~~~~~i~~vsd~~~~~~~~~~~~~~~~~~~~----~~~al~~~~ 230 (232)
T TIGR00107 162 DVFDLMAKYGILAVEMEAAALYANAAELGAKALTILTVSDHLVTHEALTAEERQTTFKDM----IILALEMVS 230 (232)
T ss_pred HHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEeecccCCCCChHHHHHHHHHH----HHHHHHHHh
Confidence 45667788899999999999999999999999999999998765443 334444444333 344444443
No 25
>PRK07115 AMP nucleosidase; Provisional
Probab=99.36 E-value=6.2e-12 Score=91.43 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=38.3
Q ss_pred HHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCC
Q 034745 5 DETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG 47 (85)
Q Consensus 5 ~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~ 47 (85)
..+.+++++++++|||+||++++|+.+|+||.+||+|||....
T Consensus 170 ~~~~~~~~g~~avEME~AAl~~va~~~gv~~~~i~~isD~~~~ 212 (258)
T PRK07115 170 FKEYLYETRAQAIDMETATLFAAGFANNIPTGALLLISDLPLR 212 (258)
T ss_pred HHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEecccCC
Confidence 3455667899999999999999999999999999999999844
No 26
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.28 E-value=4.2e-11 Score=87.63 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=51.3
Q ss_pred HHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034745 6 ETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-----TAEEFMQNLVAVTAALEQSVSQVIDFING 79 (85)
Q Consensus 6 ~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-----~~~~f~~~~~~~s~~~~~~v~~~l~~l~~ 79 (85)
.+.+++.++++||||+||++++|+.+|+|+.+|+.|||....... ..+.+ ..+.-....++.++.++.|..
T Consensus 172 ~~~~~~~ga~aVEMEsAAL~ava~~~~vp~~~il~VSD~~~~~e~~k~~~~~~~~---~~~~~~~~~~~~lea~~~l~~ 247 (266)
T TIGR01721 172 RDKLYETKAQGVEMECATLFTAGYRRNLPXGALLLISDLPLRPEGIKTKESDQLV---TDTYTEEHILTGIEVLEILRE 247 (266)
T ss_pred HHHHHHcCCEEEehhHHHHHHHHHHcCCCeEEEEEECCCCCCCCccccccchhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 455567799999999999999999999999999999999854331 12222 223333445666777776644
No 27
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=99.28 E-value=3.8e-11 Score=86.97 Aligned_cols=73 Identities=8% Similarity=0.108 Sum_probs=62.3
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCC--c-cHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK--P-TAEEFMQNLVAVTAALEQSVSQVI 74 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~--~-~~~~f~~~~~~~s~~~~~~v~~~l 74 (85)
|+...++++.+++++|+||+++.+++|+.+|+||++||.|||++.+.. + +.++..+.+.++...+.+++.++|
T Consensus 172 T~AE~r~~~~~Gad~VgMs~vpEa~~A~~~g~~~~~i~~Vtn~a~g~~~~~lt~~ev~~~~~~~~~~~~~ll~~~~ 247 (248)
T TIGR01699 172 TAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEGLSDVKLSHAQTLAAAELSKQNFINLICGFL 247 (248)
T ss_pred CHHHHHHHHHcCCcEEccchhHHHHHHHHCCCcEEEEEEEeecCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456668888999999999999999999999999999999999997543 3 678999988888777777776665
No 28
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.23 E-value=9.7e-11 Score=91.38 Aligned_cols=45 Identities=24% Similarity=0.198 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCC
Q 034745 4 QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD 48 (85)
Q Consensus 4 ~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~ 48 (85)
+....++..+++++|||+|||+++|+.+|+||.+||+|||.....
T Consensus 382 ~~~~~l~~~gAlAVEMESAALaava~~~gVP~gaLr~VSD~~l~~ 426 (477)
T TIGR01717 382 ASALRLNLSRAIAVDMESATIAAQGYRFRVPYGTLLCVSDKPLHG 426 (477)
T ss_pred HHHHHHHhCCCEEEehhHHHHHHHHHHhCCCEEEEEEEEEcCCCC
Confidence 334444555899999999999999999999999999999998654
No 29
>PRK08292 AMP nucleosidase; Provisional
Probab=99.21 E-value=1.1e-10 Score=91.32 Aligned_cols=37 Identities=30% Similarity=0.228 Sum_probs=34.5
Q ss_pred cCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCC
Q 034745 12 NDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD 48 (85)
Q Consensus 12 ~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~ 48 (85)
.+++++|||||||+++|+.+|+||++||+|||.....
T Consensus 402 ~gAlAVEMESAALa~va~~~gVP~gaIr~VSD~~~~~ 438 (489)
T PRK08292 402 SRAVALDMESATIAANGYRFRVPYGTLLCVSDKPLHG 438 (489)
T ss_pred cCCEEEehhHHHHHHHHHHhCCCEEEEEEEEecCCCC
Confidence 3899999999999999999999999999999998654
No 30
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=99.19 E-value=2.4e-10 Score=82.54 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=62.4
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCC----ccHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK----PTAEEFMQNLVAVTAALEQSVSQVI 74 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~----~~~~~f~~~~~~~s~~~~~~v~~~l 74 (85)
|+...+.++.+++++|+||+++.+++|...|+||++||.|||++.+.. .+.+++.+.+.++...+.+++.++|
T Consensus 166 T~AE~r~lr~~Gad~VgMs~~pEa~~A~~~gi~~~~i~~Vtn~a~g~~~~~~~~~~ev~~~~~~~~~~~~~l~~~~i 242 (245)
T PRK09136 166 TAAEIARLERDGCDLVGMTGMPEAALARELGLPYACLALVANWAAGRGDSAEITMAEIEAALDAAMGRVRELLERLV 242 (245)
T ss_pred CHHHHHHHHHcCCCEEcCcHHHHHHHHHHcCCCEEEEEEEeecccCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888899999999999999999999999999999999986532 2578998888888877777777665
No 31
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=98.98 E-value=3.6e-09 Score=77.88 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=45.3
Q ss_pred cCCcEEeccHHHHHHHHHhcCCCeEEEE-eeecCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 12 NDATIKDMEGAAVAYVADLFKVPAIFVK-AVTDLVDGD-KPTAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 12 ~~a~~vDME~aAiA~vc~~~~vPf~~iR-~ISD~a~~~-~~~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
+++.++|||+||++++|+.+|+|+++|+ +++|..+++ .....++.. +......++++++|+..
T Consensus 220 ~gv~~vEMEsaal~~va~~~gv~a~~I~~~i~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~ 284 (287)
T TIGR01719 220 LGVRNIEMESSMFAAMTSRAGFKAAVVCVTLLNRLEGDQITITRDQLH---EFEQRPQRLVSRYIKKK 284 (287)
T ss_pred cCCeEEehhHHHHHHHHHHcCCcEEEEEEeeeccccCCccccchhHHH---HHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999 788976654 211123322 23334466777777654
No 32
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=98.66 E-value=2.1e-07 Score=66.84 Aligned_cols=40 Identities=18% Similarity=0.002 Sum_probs=34.1
Q ss_pred HHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCC
Q 034745 8 SITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG 47 (85)
Q Consensus 8 ~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~ 47 (85)
.+++++++++|||+||++++|+.+|+|..++=++++...+
T Consensus 178 ~~~~~g~~~vEME~aal~~va~~~gi~~~~v~~~~~~~~~ 217 (245)
T TIGR01718 178 AWQAMGVLNYEMESATLFTLCSSQGLRAGMVAGVIVNRTQ 217 (245)
T ss_pred HHHHcCceEehhhHHHHHHHHHHcCCcEEEEEEEEecccc
Confidence 3445689999999999999999999999999777777543
No 33
>PRK11178 uridine phosphorylase; Provisional
Probab=98.63 E-value=3.1e-07 Score=66.35 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=32.5
Q ss_pred HHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecC
Q 034745 5 DETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDL 44 (85)
Q Consensus 5 ~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~ 44 (85)
..+.+++++++++|||+||++|+|+.+|+|+.+|=.+...
T Consensus 181 ~~~~~~~~g~~avEMEsAAla~va~~~gv~a~~v~~~~~~ 220 (251)
T PRK11178 181 SMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVN 220 (251)
T ss_pred HHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEec
Confidence 3445556699999999999999999999999998544444
No 34
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00039 Score=50.30 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCC
Q 034745 3 SQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 46 (85)
Q Consensus 3 ~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~ 46 (85)
++....++++++++||||++|+=.+|..+|..-+.|=+|||..-
T Consensus 165 ~~~~~~~~~~gvlaVeMEaaalY~~A~~~~~~Al~ilTVSD~l~ 208 (236)
T COG0813 165 TEMFDLMAKYGVLAVEMEAAALYAVAAEYGKKALTILTVSDHLV 208 (236)
T ss_pred HHHHHHHHHhCCcEEEeeHHHHHHHHHHhCcceEEEEEeecccc
Confidence 45677788999999999999999999999999999999999863
No 35
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=97.34 E-value=0.0051 Score=45.79 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=69.1
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCC---CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG---DKP-TAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~---~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
|+...+.++.+|+++|-|=.+.=+-+|...|+++..|=.|+|++.. ..+ +.++..+.+.++...+.+++.++|.++
T Consensus 171 T~AEir~~r~~GaDvVGMS~vPEvilAre~Gl~~a~ls~VTN~a~g~~~~~~~s~eeV~~~~~~~~~~~~~ll~~~i~~l 250 (290)
T PRK07432 171 TKAESNLYRSWGATVIGMTNLPEAKLAREAEIAYATLALVTDYDCWHPDHDSVTVEMVIGNLHKNAVNAQKVIQETVRRL 250 (290)
T ss_pred cHHHHHHHHHcCCCEeccCchHHHHHHHhCCCcEEEEEEEeecccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788899999999999999999999999999999999999853 233 789999999999999999999999998
Q ss_pred hc
Q 034745 78 NG 79 (85)
Q Consensus 78 ~~ 79 (85)
..
T Consensus 251 ~~ 252 (290)
T PRK07432 251 SA 252 (290)
T ss_pred cc
Confidence 55
No 36
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=97.32 E-value=0.0045 Score=46.04 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=68.7
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCC---CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG---DKP-TAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~---~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
|+...+.++.+|+++|-|=...=+-+|...|++++.|=.|+|++.. ..+ +.++..+.+.++...+.+++.++|..+
T Consensus 168 T~AEir~~r~~GaDvVGMStvPEvilAre~Gl~~a~is~VTN~a~g~~~~~~~t~eeV~~~~~~~~~~~~~ll~~~i~~l 247 (289)
T PRK08931 168 TLAESKLYRSWGCDVIGMTNMPEAKLAREAEICYATVAMVTDYDCWHPDHDAVTVDAVIAVLLANADKARALVARLAPDL 247 (289)
T ss_pred CHHHHHHHHHcCCCEeccCccHHHHHHHHcCCceEEEEEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788899999999999999999999999999999999999843 233 789999999999999999999999998
Q ss_pred hc
Q 034745 78 NG 79 (85)
Q Consensus 78 ~~ 79 (85)
..
T Consensus 248 ~~ 249 (289)
T PRK08931 248 GA 249 (289)
T ss_pred cc
Confidence 54
No 37
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=97.14 E-value=0.0087 Score=43.90 Aligned_cols=78 Identities=19% Similarity=0.092 Sum_probs=68.7
Q ss_pred CHHHHHHHHhc-CCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCC-c-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034745 2 SSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK-P-TAEEFMQNLVAVTAALEQSVSQVIDFIN 78 (85)
Q Consensus 2 ~~~~~~~~~~~-~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~-~-~~~~f~~~~~~~s~~~~~~v~~~l~~l~ 78 (85)
|+...+.++.+ |+++|-|=.+.=+-+|...|++++.|=.|+|++.+.. + +.++..+.+.++...+.+++.++|+.+.
T Consensus 172 T~AEir~~r~~~GaD~VGMS~vpEvilAre~g~~~~~is~VtN~a~g~~~~~t~~ev~~~~~~~~~~~~~ll~~~i~~l~ 251 (267)
T PRK08564 172 TRAESRMWREVFKADIIGMTLVPEVNLACELGMCYATIAMVTDYDVWAEKPVTAEEVTRVMAENTEKAKKLLYEAIPRIP 251 (267)
T ss_pred CHHHHHHHHHccCCCEeccCccHHHHHHHHcCCceEEEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56677888896 9999999999999999999999999999999986543 3 7889999999999999999999999885
Q ss_pred c
Q 034745 79 G 79 (85)
Q Consensus 79 ~ 79 (85)
.
T Consensus 252 ~ 252 (267)
T PRK08564 252 E 252 (267)
T ss_pred c
Confidence 4
No 38
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=97.13 E-value=0.0091 Score=43.88 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=69.0
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCC---Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD---KP-TAEEFMQNLVAVTAALEQSVSQVIDFI 77 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~---~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l 77 (85)
|+...+.++.+|+++|-|=...=+-+|...|++++.|=.|+|++... .+ +.++..+.+.+++..+..++.++|..+
T Consensus 163 T~AEir~~r~~GaDvVGMS~vPEvilAre~gl~~~~is~VTN~a~g~~~~~~~~~eev~~~~~~~~~~~~~ll~~~i~~~ 242 (264)
T PRK07823 163 TRAESRWFAAQGWSLVNMTGYPEAVLARELELCYAAIALVTDLDAGVEAGEGVKAVDVFAEFGRNIERLKRLVRDAIAAV 242 (264)
T ss_pred CHHHHHHHHHcCCCEeccCccHHHHHHHHCCCceEEEEEEeccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778889999999999999999999999999999999999998543 23 688999999999999999999999887
Q ss_pred hcc
Q 034745 78 NGK 80 (85)
Q Consensus 78 ~~~ 80 (85)
...
T Consensus 243 ~~~ 245 (264)
T PRK07823 243 PAE 245 (264)
T ss_pred ccc
Confidence 543
No 39
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=96.86 E-value=0.017 Score=41.85 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=61.8
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCC--Cc-cHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD--KP-TAEEFMQNLVAVTAALEQSVSQVI 74 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~--~~-~~~~f~~~~~~~s~~~~~~v~~~l 74 (85)
|+...+.++.+++++|=|=...=+-+|...|++++.|=.|+|++.+. .+ +.++..+.+.+++..+.+++.++|
T Consensus 161 T~AEir~~r~~GaD~VGMS~vpEvilAre~g~~~a~is~VtN~a~g~~~~~~th~ev~~~~~~~~~~~~~ll~~~i 236 (237)
T TIGR01698 161 TPAEIRMAGILGADLVGMSTVPETIAARFCGLEVLGVSLVTNLAAGITGTPLSHAEVKAAGAAAGTRLAALLADII 236 (237)
T ss_pred CHHHHHHHHHcCCCEeccCchHHHHHHHHCCCcEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888999999999999999999999999999999999998553 23 678888888888777777776665
No 40
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.014 Score=42.77 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEE-eeecCCCCCCc
Q 034745 4 QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVK-AVTDLVDGDKP 50 (85)
Q Consensus 4 ~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR-~ISD~a~~~~~ 50 (85)
+..+.++..+...+|||+|++.-.|...|++.-++= +|+|..+.+..
T Consensus 177 ~~~~~W~~~gv~~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~e~~ 224 (248)
T COG2820 177 ESWEEWQDLGVLNIEMESATLFTLGSLRGLRAGAVLGVIANRTQGEQG 224 (248)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHHcCcccccEEEEEccccccccc
Confidence 344555666899999999999999999999944433 59998766543
No 41
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.17 Score=37.41 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=65.1
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCC-Cc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD-KP-TAEEFMQNLVAVTAALEQSVSQVIDF 76 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~-~~-~~~~f~~~~~~~s~~~~~~v~~~l~~ 76 (85)
|+...+.++.+++++|-|=+..=+-+|...++.++.|=.|+|++-+. .+ +.++-.+.+.+...++.+++.++|..
T Consensus 185 T~AEirm~r~~GaDvVGMS~vPEv~lARe~~l~ya~is~vTn~aag~~~~lt~eEV~~~~~~~~~~~~~l~~~~i~~ 261 (262)
T COG0005 185 TPAEIRMFRSLGADVVGMSTVPEVILARELGLCVAALSLVTNYAAGIGQPLTHEEVLEVAKENAEKIAKLLAAAIAK 261 (262)
T ss_pred CHHHHHHHHHhCCCcccCcCCcHHHHhHhhCCcEEEEEEeehhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888999999999999999999999999999999999998554 33 78888898888888888888888765
No 42
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=83.97 E-value=5.7 Score=29.55 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=58.1
Q ss_pred CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-------cHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-------TAEEFMQNLVAVTAALEQSVSQVI 74 (85)
Q Consensus 2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-------~~~~f~~~~~~~s~~~~~~v~~~l 74 (85)
|....+.++..++++|-|-..-=.-||+..|+.++.+-.|++.+..+.+ +.++-++....++..+.+.+-.++
T Consensus 202 T~AE~rmlr~mg~dAVGMStvpEVivArHcG~kVlafslITn~~~~d~s~sa~~ev~h~evl~v~~~a~~~~~~lVs~lm 281 (286)
T KOG3984|consen 202 TRAESRMLRTMGADAVGMSTVPEVIVARHCGLKVLAFSLITNKAVVDESASADVEVDHDEVLEVGKQAAQACSDLVSRLM 281 (286)
T ss_pred cHHHHHHHHHhCcccccccccchheeeccCCcEEEEEEEEeccccccCchhccccCCHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3456677888899999999998888999999999999999998732221 456667777777777777777776
Q ss_pred HHh
Q 034745 75 DFI 77 (85)
Q Consensus 75 ~~l 77 (85)
..|
T Consensus 282 ~~i 284 (286)
T KOG3984|consen 282 YEI 284 (286)
T ss_pred hhc
Confidence 554
No 43
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=83.72 E-value=5.9 Score=29.37 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCC---CCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034745 3 SQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLV---DGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFIN 78 (85)
Q Consensus 3 ~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a---~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l~ 78 (85)
......+|.+|++.+.|-...=+..|.+.++|+-.|=..+||- .+..+ +-+.-++.++.+..++..++++.+..|.
T Consensus 180 RAES~mfR~wGa~vINMt~iPE~~LAkEagi~Y~~iamaTDYDcWr~~ee~Vtve~Vm~~~~~N~~kak~ll~~av~~i~ 259 (283)
T KOG3985|consen 180 RAESKMFRSWGASVINMTVIPEAKLAKEAGIPYQMIAMATDYDCWRMEEEPVTVETVMKTLANNVRKAKILLLEAVGSIA 259 (283)
T ss_pred HHHHHHHHHhccceeeeeechHHHHHHhcCcchhhheeccchhhhhccCCCccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 3455677889999999999999999999999999999999984 33333 6677777777777777777888777765
Q ss_pred c
Q 034745 79 G 79 (85)
Q Consensus 79 ~ 79 (85)
.
T Consensus 260 k 260 (283)
T KOG3985|consen 260 K 260 (283)
T ss_pred c
Confidence 4
No 44
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=72.71 E-value=3.6 Score=29.55 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=17.4
Q ss_pred EeccHHHHHHHHHhcCCCeEEE
Q 034745 17 KDMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 17 vDME~aAiA~vc~~~~vPf~~i 38 (85)
--.=++.+|.+|..+++||+++
T Consensus 195 nk~Gt~~~a~~Ak~~~vPv~v~ 216 (282)
T PF01008_consen 195 NKVGTLQLALAAKEFNVPVYVL 216 (282)
T ss_dssp EETTHHHHHHHHHHTT-EEEEE
T ss_pred ehhhHHHHHHHHHhhCCCEEEE
Confidence 3344589999999999999998
No 45
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=69.64 E-value=5.2 Score=29.35 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=18.7
Q ss_pred EEeccHHHHHHHHHhcCCCeEEE
Q 034745 16 IKDMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 16 ~vDME~aAiA~vc~~~~vPf~~i 38 (85)
.--.=++.+|..|+.+++||+++
T Consensus 169 ~nkvGT~~~Al~A~~~~vPv~V~ 191 (253)
T PRK06372 169 IHKNGTFPLALCARYLKKPFYSL 191 (253)
T ss_pred eehhhHHHHHHHHHHcCCCEEEE
Confidence 33444688999999999999995
No 46
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=66.07 E-value=4.3 Score=31.69 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=13.6
Q ss_pred cHHHHHHHHHhcCCCeEE
Q 034745 20 EGAAVAYVADLFKVPAIF 37 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~ 37 (85)
+--+||++|++++||+++
T Consensus 173 ~i~~IakiC~~~~IPhlv 190 (389)
T PF05889_consen 173 DIEEIAKICKEYDIPHLV 190 (389)
T ss_dssp -HHHHHHHHHHHT--EEE
T ss_pred cHHHHHHHHHHcCCceEE
Confidence 567899999999999986
No 47
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=64.93 E-value=7 Score=29.13 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.0
Q ss_pred eccHHHHHHHHHhcCCCeEEE
Q 034745 18 DMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 18 DME~aAiA~vc~~~~vPf~~i 38 (85)
-.=++.+|.+|+.+++||+++
T Consensus 208 kiGT~~~A~~Ak~~~vPv~V~ 228 (310)
T PRK08535 208 KIGTSQIALAAHEARVPFMVA 228 (310)
T ss_pred HHhHHHHHHHHHHhCCCEEEe
Confidence 344688999999999999987
No 48
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=62.19 E-value=49 Score=23.87 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHH
Q 034745 22 AAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~ 60 (85)
.|++..|.++|++=+.|=+++|..|....+...|++.+.
T Consensus 49 ~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~ 87 (223)
T PF06415_consen 49 FALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELE 87 (223)
T ss_dssp HHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHH
Confidence 588999999999999999999999876656677766543
No 49
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=61.15 E-value=9 Score=29.16 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=21.1
Q ss_pred CcEEeccHHHHHHHHHhcCCCeEEEEe
Q 034745 14 ATIKDMEGAAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 14 a~~vDME~aAiA~vc~~~~vPf~~iR~ 40 (85)
..+--.=++.+|..|+.+||||+++=-
T Consensus 231 ~v~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 231 DFANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred CEeehhhHHHHHHHHHHcCCCEEEecc
Confidence 334445578999999999999999843
No 50
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=60.15 E-value=9.8 Score=28.27 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.4
Q ss_pred EeccHHHHHHHHHhcCCCeEEE
Q 034745 17 KDMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 17 vDME~aAiA~vc~~~~vPf~~i 38 (85)
--.=++.+|.+|+.+++||+++
T Consensus 202 nkiGT~~lA~~Ak~~~vPv~V~ 223 (301)
T TIGR00511 202 NKIGTSQLALAAREARVPFMVA 223 (301)
T ss_pred EHHhHHHHHHHHHHhCCCEEEE
Confidence 3344688999999999999987
No 51
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=59.66 E-value=1.3 Score=24.74 Aligned_cols=54 Identities=13% Similarity=0.380 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCCeEEEEeeecCCCC-CC-c-c-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 23 AVAYVADLFKVPAIFVKAVTDLVDG-DK-P-T-AEEFMQNLVAVTAALEQSVSQVIDF 76 (85)
Q Consensus 23 AiA~vc~~~~vPf~~iR~ISD~a~~-~~-~-~-~~~f~~~~~~~s~~~~~~v~~~l~~ 76 (85)
-++.++|..+-|.-+|++.++.... .. + + ..++...+...+..+..++-.+++.
T Consensus 5 ~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 62 (68)
T PF00512_consen 5 FLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDF 62 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999998755 22 2 2 3677777777766666666666553
No 52
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=58.55 E-value=11 Score=27.94 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=19.4
Q ss_pred cEEeccHHHHHHHHHhcCCCeEEE
Q 034745 15 TIKDMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 15 ~~vDME~aAiA~vc~~~~vPf~~i 38 (85)
.+--+=++.+|..|+.+|+||+++
T Consensus 194 v~NKiGT~~lA~~Ak~~~vPfyV~ 217 (275)
T PRK08335 194 VVNKAGTYLLALACHDNGVPFYVA 217 (275)
T ss_pred EeehhhHHHHHHHHHHcCCCEEEE
Confidence 334455688999999999999987
No 53
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=58.50 E-value=10 Score=29.22 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=19.5
Q ss_pred cEEeccHHHHHHHHHhcCCCeEEE
Q 034745 15 TIKDMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 15 ~~vDME~aAiA~vc~~~~vPf~~i 38 (85)
.+--.=++.+|..|+.+|+||+++
T Consensus 263 v~NKiGTy~lA~~Ak~~~vPfyV~ 286 (363)
T PRK05772 263 VFNKIGTFKEAVIAHELGIPFYAL 286 (363)
T ss_pred EeehhhhHHHHHHHHHhCCCEEEE
Confidence 334455788999999999999987
No 54
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=58.14 E-value=8.7 Score=30.27 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=17.4
Q ss_pred CcEEeccHHHHHHHHHhcCCCeEE
Q 034745 14 ATIKDMEGAAVAYVADLFKVPAIF 37 (85)
Q Consensus 14 a~~vDME~aAiA~vc~~~~vPf~~ 37 (85)
..+.|-| +||.+|+++|+|++|
T Consensus 161 ~~v~Die--~ia~iAh~~gvpliV 182 (426)
T COG2873 161 LDVLDIE--AIAEIAHRHGVPLIV 182 (426)
T ss_pred ccccCHH--HHHHHHHHcCCcEEE
Confidence 4455655 689999999999875
No 55
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=57.66 E-value=11 Score=28.09 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=19.6
Q ss_pred cEEeccHHHHHHHHHhcCCCeEEE
Q 034745 15 TIKDMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 15 ~~vDME~aAiA~vc~~~~vPf~~i 38 (85)
..--+=++-+|..|+.+++||+++
T Consensus 214 v~nk~GT~~lA~~Ak~~~vPv~V~ 237 (303)
T TIGR00524 214 VANKIGTYQLAVLAKEFRIPFFVA 237 (303)
T ss_pred EeEhhhHHHHHHHHHHhCCCEEEe
Confidence 344455788999999999999987
No 56
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=56.35 E-value=12 Score=28.56 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCCeEEEEeee
Q 034745 21 GAAVAYVADLFKVPAIFVKAVT 42 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR~IS 42 (85)
++.+|..|+.+|+||+++=-.|
T Consensus 248 T~~lA~~Ak~~~vPfyV~ap~s 269 (339)
T PRK06036 248 TYTHSVLAKEHEIPFYVAAPLS 269 (339)
T ss_pred HHHHHHHHHHhCCCEEEEeecC
Confidence 5788999999999999975433
No 57
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=55.52 E-value=13 Score=28.33 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=20.4
Q ss_pred cEEeccHHHHHHHHHhcCCCeEEEEe
Q 034745 15 TIKDMEGAAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 15 ~~vDME~aAiA~vc~~~~vPf~~iR~ 40 (85)
.+--+=++.+|..|+.+++||+++=-
T Consensus 242 v~nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 242 TANKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred EeehhhHHHHHHHHHHhCCCEEEecc
Confidence 33445568999999999999998743
No 58
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=54.76 E-value=17 Score=25.25 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=26.9
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEee-ecCC
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKAV-TDLV 45 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~I-SD~a 45 (85)
+.+++|-|..+|. ++...|+|++.+|=- .++.
T Consensus 77 I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~~g 110 (187)
T PRK13810 77 VAGVELGGVPLATAVSLETGLPLLIVRKSVKDYG 110 (187)
T ss_pred EEEEccchHHHHHHHHHHhCCCEEEEecCCCccC
Confidence 6788999999888 889999999999975 5553
No 59
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=54.69 E-value=13 Score=28.32 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.4
Q ss_pred cEEeccHHHHHHHHHhcCCCeEEEEeee
Q 034745 15 TIKDMEGAAVAYVADLFKVPAIFVKAVT 42 (85)
Q Consensus 15 ~~vDME~aAiA~vc~~~~vPf~~iR~IS 42 (85)
.+--.=++.+|..|+.+++||+++=-.+
T Consensus 242 v~NkiGT~~lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 242 VANKIGTYQLAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred EeehhhHHHHHHHHHHhCCCEEEecccc
Confidence 3344456889999999999999975544
No 60
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=54.55 E-value=13 Score=28.61 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeee
Q 034745 19 MEGAAVAYVADLFKVPAIFVKAVT 42 (85)
Q Consensus 19 ME~aAiA~vc~~~~vPf~~iR~IS 42 (85)
.=++.+|..|+.+|+||+++=.+|
T Consensus 259 iGTy~lA~~Ak~~~vPfyV~Ap~~ 282 (356)
T PRK08334 259 IGTYTLAVLAKEHGIPFFTVAPLS 282 (356)
T ss_pred hhHHHHHHHHHHhCCCEEEEcccC
Confidence 346788999999999999985433
No 61
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=50.79 E-value=19 Score=26.56 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=25.5
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEeee
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKAVT 42 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~IS 42 (85)
+.++++=|..+|+ +|...|+||+++|==.
T Consensus 132 VvgvetkGIpLA~avA~~L~vp~vivRK~~ 161 (268)
T TIGR01743 132 VMTVATKGIPLAYAVASVLNVPLVIVRKDS 161 (268)
T ss_pred EEEEccchHHHHHHHHHHHCCCEEEEEECC
Confidence 6678999999998 9999999999999643
No 62
>PRK06381 threonine synthase; Validated
Probab=49.89 E-value=19 Score=26.35 Aligned_cols=18 Identities=39% Similarity=0.766 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+||+++
T Consensus 75 g~alA~~aa~~G~~~~iv 92 (319)
T PRK06381 75 GASIAYFARLYGLKAVIF 92 (319)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 578999999999998874
No 63
>PRK11761 cysM cysteine synthase B; Provisional
Probab=49.85 E-value=19 Score=26.35 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 75 g~alA~~a~~~G~~~~i~ 92 (296)
T PRK11761 75 GIALAMIAAIKGYRMKLI 92 (296)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 678999999999998876
No 64
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=49.71 E-value=9.5 Score=26.73 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=23.8
Q ss_pred EeccHHHHHHHHHhcCCCeEEEEeeecCC
Q 034745 17 KDMEGAAVAYVADLFKVPAIFVKAVTDLV 45 (85)
Q Consensus 17 vDME~aAiA~vc~~~~vPf~~iR~ISD~a 45 (85)
...++.+++.+|..+++|++....-++..
T Consensus 72 ~s~~~~~v~~~~~~~~iP~is~~~~~~~~ 100 (328)
T cd06351 72 SSESASAVQSICDALEIPHISISGGSEGL 100 (328)
T ss_pred CHHHHHHHHHHhccCCCCeEEeecCcccc
Confidence 35677788999999999999998776654
No 65
>PRK09213 pur operon repressor; Provisional
Probab=49.46 E-value=21 Score=26.44 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=24.4
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEe
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKA 40 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~ 40 (85)
+.++++=|-.+|. +|...|+||+++|=
T Consensus 134 Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 134 VMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred EEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 6678999999998 89999999999997
No 66
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [].; GO: 0055085 transmembrane transport
Probab=48.70 E-value=64 Score=24.53 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=27.7
Q ss_pred CcEEeccHHHHHHHHHhcCCC-------eEEEEeeecCCCCC
Q 034745 14 ATIKDMEGAAVAYVADLFKVP-------AIFVKAVTDLVDGD 48 (85)
Q Consensus 14 a~~vDME~aAiA~vc~~~~vP-------f~~iR~ISD~a~~~ 48 (85)
.....||-.|.+++-.+...- ++++|++||+-.+.
T Consensus 226 y~~T~~ED~atl~aL~r~~~~g~vD~~RvlvlRt~SNFdrpp 267 (314)
T PF06516_consen 226 YCTTAMEDNATLEALTRLAKAGRVDFDRVLVLRTASNFDRPP 267 (314)
T ss_pred EechHHHhHHHHHHHHHHHhcCCcCcceEEEEecccCCCCCc
Confidence 556789999998887765543 89999999997553
No 67
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=48.57 E-value=20 Score=26.16 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 71 g~alA~~a~~~G~~~~i~ 88 (290)
T TIGR01138 71 GIALAMIAALKGYRMKLL 88 (290)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 579999999999998875
No 68
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=48.27 E-value=20 Score=25.84 Aligned_cols=18 Identities=33% Similarity=0.266 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|..+|+|+.++
T Consensus 65 g~alA~~a~~~G~~~~i~ 82 (291)
T cd01561 65 GIGLAMVAAAKGYRFIIV 82 (291)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 468999999999998775
No 69
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=48.26 E-value=13 Score=19.14 Aligned_cols=52 Identities=12% Similarity=0.381 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCeEEEEeeecCCCC-CCc-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 24 VAYVADLFKVPAIFVKAVTDLVDG-DKP-TAEEFMQNLVAVTAALEQSVSQVID 75 (85)
Q Consensus 24 iA~vc~~~~vPf~~iR~ISD~a~~-~~~-~~~~f~~~~~~~s~~~~~~v~~~l~ 75 (85)
++.++|..+-|...|+..++.... ..+ +..++.+.+......+..++-.++.
T Consensus 6 ~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 59 (66)
T smart00388 6 LANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLD 59 (66)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788899998888777765432 221 2345555555555555555555544
No 70
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=47.31 E-value=45 Score=23.62 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHhc--CCcEEeccHHHHHHHHHhcCCCeEEEEeeecCC
Q 034745 7 TSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLV 45 (85)
Q Consensus 7 ~~~~~~--~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a 45 (85)
++++++ ..+.+|.+..+ ...|...|+|+++|--..+..
T Consensus 88 ~~l~~~~pDlVIsD~~~~~-~~aa~~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 88 RWLREFRPDLVISDFYPLA-ALAARRAGIPVIVISNQYWFL 127 (318)
T ss_pred HHHHhcCCCEEEEcChHHH-HHHHHhcCCCEEEEEehHHcc
Confidence 345555 47888998886 488899999999887777664
No 71
>PRK08813 threonine dehydratase; Provisional
Probab=46.95 E-value=22 Score=27.07 Aligned_cols=18 Identities=39% Similarity=0.349 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|++|..+|+|+.++
T Consensus 93 G~alA~aa~~~Gi~~~Iv 110 (349)
T PRK08813 93 AQGVAWSAYRLGVQAITV 110 (349)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998875
No 72
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=45.94 E-value=29 Score=23.73 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=26.2
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEe-eecC
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKA-VTDL 44 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~-ISD~ 44 (85)
+.++++.|..+|. ++...++|++.+|- -+++
T Consensus 62 ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~y 94 (176)
T PRK13812 62 LAGVALGAVPLVAVTSVETGVPYVIARKQAKEY 94 (176)
T ss_pred EEEeecchHHHHHHHHHHHCCCEEEEeccCCcC
Confidence 7789999999987 88999999999987 3444
No 73
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=45.76 E-value=23 Score=26.11 Aligned_cols=18 Identities=44% Similarity=0.637 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 63 g~alA~~a~~~G~~~~iv 80 (316)
T cd06448 63 GLAAAYAARKLGVPCTIV 80 (316)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998775
No 74
>PLN02565 cysteine synthase
Probab=44.49 E-value=24 Score=26.23 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 79 g~alA~~a~~~G~~~~iv 96 (322)
T PLN02565 79 GIGLAFMAAAKGYKLIIT 96 (322)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 579999999999998864
No 75
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=44.34 E-value=27 Score=24.28 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|...|+|++++
T Consensus 62 g~alA~~a~~~g~~~~v~ 79 (244)
T cd00640 62 GIALAAAAARLGLKCTIV 79 (244)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 478999999999999876
No 76
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=44.18 E-value=26 Score=25.27 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=23.1
Q ss_pred HhcCCcEEec--------------cHHHHHHHHHhcCCCeEEEE
Q 034745 10 TANDATIKDM--------------EGAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 10 ~~~~a~~vDM--------------E~aAiA~vc~~~~vPf~~iR 39 (85)
.+.|+++++| |...+...|+.+|+|++++-
T Consensus 103 ~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~ 146 (267)
T PRK07226 103 IKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMM 146 (267)
T ss_pred HHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3456666666 56788999999999999863
No 77
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=44.05 E-value=26 Score=25.42 Aligned_cols=18 Identities=33% Similarity=0.283 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 70 g~alA~~a~~~G~~~~i~ 87 (299)
T TIGR01136 70 GIALAMVAAAKGYKLILT 87 (299)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 578999999999998876
No 78
>PLN02970 serine racemase
Probab=43.63 E-value=27 Score=25.90 Aligned_cols=18 Identities=44% Similarity=0.538 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 87 g~alA~~a~~~G~~~~iv 104 (328)
T PLN02970 87 AAALALAAKLRGIPAYIV 104 (328)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998775
No 79
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=43.52 E-value=58 Score=22.59 Aligned_cols=29 Identities=28% Similarity=0.170 Sum_probs=23.4
Q ss_pred HHhcCCcEEec--------------cHHHHHHHHHhcCCCeEE
Q 034745 9 ITANDATIKDM--------------EGAAVAYVADLFKVPAIF 37 (85)
Q Consensus 9 ~~~~~a~~vDM--------------E~aAiA~vc~~~~vPf~~ 37 (85)
..+.|++.++| +...+...|+.+++|+++
T Consensus 85 a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 85 AVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred HHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 34557877766 778899999999999877
No 80
>PRK06815 hypothetical protein; Provisional
Probab=43.45 E-value=26 Score=25.73 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCCeEEE
Q 034745 22 AAVAYVADLFKVPAIFV 38 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~i 38 (85)
.|+|.+|...|+|+.++
T Consensus 81 ~alA~~a~~~G~~~~i~ 97 (317)
T PRK06815 81 QGVALAAKLAGIPVTVY 97 (317)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 78999999999998877
No 81
>PRK07048 serine/threonine dehydratase; Validated
Probab=43.37 E-value=27 Score=25.64 Aligned_cols=18 Identities=39% Similarity=0.576 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 84 g~alA~~a~~~G~~~~vv 101 (321)
T PRK07048 84 AQAIALSARLLGIPATIV 101 (321)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998764
No 82
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=43.10 E-value=28 Score=24.88 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.7
Q ss_pred cHHHHHHHHHhcCCCeEEEEe
Q 034745 20 EGAAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~iR~ 40 (85)
+..++...|+.+|+||+++..
T Consensus 124 ~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 124 DLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEEe
Confidence 577888999999999998544
No 83
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=43.06 E-value=31 Score=23.95 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.8
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEee
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKAV 41 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~I 41 (85)
+.++++=|..+|. +|...|+||+.+|=-
T Consensus 54 Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 54 ILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred EEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 6788999999988 899999999999964
No 84
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=42.80 E-value=27 Score=25.42 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|...|+|++++
T Consensus 66 g~alA~~a~~~G~~~~i~ 83 (307)
T cd06449 66 TRQVAAVAAKLGLKCVLV 83 (307)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 579999999999998664
No 85
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=42.60 E-value=29 Score=24.88 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|...|+|++++
T Consensus 77 g~alA~~a~~~G~~~~iv 94 (304)
T cd01562 77 AQGVAYAAKLLGIPATIV 94 (304)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998765
No 86
>PRK09932 glycerate kinase II; Provisional
Probab=42.29 E-value=1.6e+02 Score=22.89 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCeEEEEe
Q 034745 22 AAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ 40 (85)
.+||+.|.++++|+++|=+
T Consensus 306 ~~Va~~A~~~~~Pvi~i~G 324 (381)
T PRK09932 306 LGVASVAKQFNVPVIGIAG 324 (381)
T ss_pred HHHHHHHHHcCCCEEEEec
Confidence 6899999999999999843
No 87
>PRK06110 hypothetical protein; Provisional
Probab=41.92 E-value=29 Score=25.53 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 82 g~alA~~a~~~G~~~~iv 99 (322)
T PRK06110 82 GQSVAFAARRHGLAATIV 99 (322)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 579999999999999887
No 88
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=41.28 E-value=58 Score=24.77 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=23.4
Q ss_pred EEeccHHHHHHHHHhcCCCeEEEEeeecCCC
Q 034745 16 IKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 46 (85)
Q Consensus 16 ~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~ 46 (85)
--.+|..-+-+.....|||++.| |+.+
T Consensus 335 ~~~~e~~~lk~~l~e~GIP~L~i----d~~~ 361 (380)
T TIGR02263 335 PALLERPMLAARCKEHGIPQIAF----KYAE 361 (380)
T ss_pred hhhhhHHHHHHHHHHCCCCEEEE----EecC
Confidence 34899999999999999999999 6665
No 89
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=40.03 E-value=33 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=27.5
Q ss_pred CcEEec--cHHHHHHHHHhcCCCeEEEEeeecCCCCCC
Q 034745 14 ATIKDM--EGAAVAYVADLFKVPAIFVKAVTDLVDGDK 49 (85)
Q Consensus 14 a~~vDM--E~aAiA~vc~~~~vPf~~iR~ISD~a~~~~ 49 (85)
++|+|+ .-.++...|+.+++||+..-+.....|+..
T Consensus 126 IdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~ 163 (268)
T PRK15116 126 IDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQ 163 (268)
T ss_pred EEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCe
Confidence 667787 445689999999999998876666666553
No 90
>PRK06721 threonine synthase; Reviewed
Probab=39.83 E-value=32 Score=25.77 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+||.++
T Consensus 87 G~alA~~aa~~G~~~~vv 104 (352)
T PRK06721 87 SASAAAYAARLGMKCIIV 104 (352)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 578999999999998776
No 91
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=39.77 E-value=27 Score=24.73 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 034745 21 GAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR 39 (85)
+.|+|++|...|+|++++=
T Consensus 68 g~a~A~~a~~~g~~~~i~~ 86 (306)
T PF00291_consen 68 GRALAYAAARLGLKCTIVV 86 (306)
T ss_dssp HHHHHHHHHHHTCEEEEEE
T ss_pred eehhhhhhhhccccceeee
Confidence 5789999999999987763
No 92
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=39.69 E-value=17 Score=27.01 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=22.5
Q ss_pred eccHHHHHHHHHhcCCCeEEEEeeecCC
Q 034745 18 DMEGAAVAYVADLFKVPAIFVKAVTDLV 45 (85)
Q Consensus 18 DME~aAiA~vc~~~~vPf~~iR~ISD~a 45 (85)
-..+.+++.+|..++||++..-+.++..
T Consensus 82 S~~~~av~~i~~~~~iP~Is~~~t~~~l 109 (384)
T cd06393 82 GSCTNAVQSICNALEVPHIQLRWKHHPL 109 (384)
T ss_pred hHHHHHHHHHHhccCCCeEeccCCCccc
Confidence 4577889999999999999887655433
No 93
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=39.66 E-value=31 Score=25.03 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.9
Q ss_pred cHHHHHHHHHhcCCCeEEE
Q 034745 20 EGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~i 38 (85)
=+.|+|.+|...|+|++++
T Consensus 69 ~g~alA~~a~~~G~~~~iv 87 (311)
T TIGR01275 69 HARATALAAKKLGLDAVLV 87 (311)
T ss_pred HHHHHHHHHHHhCCceEEE
Confidence 3679999999999997654
No 94
>PRK06608 threonine dehydratase; Provisional
Probab=39.57 E-value=33 Score=25.67 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 84 g~alA~~a~~~G~~~~vv 101 (338)
T PRK06608 84 GQAVAYASKLFGIKTRIY 101 (338)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999999887
No 95
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=39.51 E-value=24 Score=27.13 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+--||.+|..++||++.=
T Consensus 175 akkva~ic~e~gvPlllN 192 (382)
T COG1103 175 AKKVAKICREYGVPLLLN 192 (382)
T ss_pred hHHHHHHHHHcCCceEee
Confidence 346899999999998753
No 96
>PRK07476 eutB threonine dehydratase; Provisional
Probab=39.34 E-value=33 Score=25.27 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|++++
T Consensus 79 g~alA~~a~~~G~~~~i~ 96 (322)
T PRK07476 79 GRALAYAARALGIRATIC 96 (322)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 578999999999998775
No 97
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=39.18 E-value=34 Score=24.76 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 69 g~alA~~a~~~Gl~~~i~ 86 (298)
T TIGR01139 69 GIALAMVAAARGYKLILT 86 (298)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 578999999999998876
No 98
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=39.00 E-value=29 Score=23.77 Aligned_cols=16 Identities=38% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHHhcCCCeEEEEe
Q 034745 25 AYVADLFKVPAIFVKA 40 (85)
Q Consensus 25 A~vc~~~~vPf~~iR~ 40 (85)
+.+|...|+||+.+|=
T Consensus 69 ~~vA~~Lgvp~v~vRK 84 (179)
T COG0503 69 AAVALELGVPFVPVRK 84 (179)
T ss_pred HHHHHHhCCCEEEEEe
Confidence 3578999999999996
No 99
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=39.00 E-value=38 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.0
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEee
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKAV 41 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~I 41 (85)
+.+++.-|..+|. +|...|+||+.+|=-
T Consensus 54 Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~ 82 (191)
T TIGR01744 54 IVTIEASGIAPAIMTGLKLGVPVVFARKK 82 (191)
T ss_pred EEEEccccHHHHHHHHHHHCCCEEEEEeC
Confidence 5567788888887 789999999999964
No 100
>PRK07409 threonine synthase; Validated
Probab=38.86 E-value=35 Score=25.50 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=17.0
Q ss_pred eccHHHHHHHHHhcCCCeEEE
Q 034745 18 DMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 18 DME~aAiA~vc~~~~vPf~~i 38 (85)
++ |.|+|.+|..+|+|+.++
T Consensus 88 N~-g~alA~~a~~~G~~~~iv 107 (353)
T PRK07409 88 NT-SASAAAYAARAGLKAFVL 107 (353)
T ss_pred HH-HHHHHHHHHHcCCCEEEE
Confidence 45 799999999999997654
No 101
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=38.48 E-value=27 Score=27.29 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCeEEEEe
Q 034745 22 AAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ 40 (85)
-+||.+|.++++|++.|=+
T Consensus 306 igVA~~Akk~~vPvIaiaG 324 (378)
T COG1929 306 IGVAKLAKKYGVPVIAIAG 324 (378)
T ss_pred hHHHHhhhhhCCCEEEEec
Confidence 4799999999999999876
No 102
>PRK10717 cysteine synthase A; Provisional
Probab=37.96 E-value=36 Score=25.04 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+||.++
T Consensus 76 g~alA~~a~~~G~~~~vv 93 (330)
T PRK10717 76 GIGLALVAAARGYKTVIV 93 (330)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 578999999999998765
No 103
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=37.68 E-value=37 Score=24.76 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 82 g~alA~~a~~~G~~~~iv 99 (324)
T cd01563 82 SASLAAYAARAGIKCVVF 99 (324)
T ss_pred HHHHHHHHHHcCCceEEE
Confidence 568999999999998875
No 104
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=37.51 E-value=30 Score=25.30 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|++++
T Consensus 83 g~a~A~~a~~~g~~~~v~ 100 (328)
T TIGR00260 83 GAAAAAYAGKAGVKVVIL 100 (328)
T ss_pred HHHHHHHhccCCCcEEEE
Confidence 578999999999999887
No 105
>PRK06352 threonine synthase; Validated
Probab=37.42 E-value=36 Score=25.53 Aligned_cols=19 Identities=32% Similarity=0.114 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 034745 21 GAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR 39 (85)
|.|+|.+|...|+||.++=
T Consensus 87 G~AlA~~aa~~G~~~~ivv 105 (351)
T PRK06352 87 SAAAAAYATRAGLKAYIVI 105 (351)
T ss_pred HHHHHHHHHHcCCcEEEEE
Confidence 6899999999999988763
No 106
>PRK07334 threonine dehydratase; Provisional
Probab=37.41 E-value=37 Score=25.89 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 83 g~alA~~a~~~G~~~~iv 100 (403)
T PRK07334 83 AQGVAYHAQRLGIPATIV 100 (403)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998883
No 107
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=37.17 E-value=2.1e+02 Score=22.57 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHH-HhcCCCeEEEEeeecCCCCCCccHHHHHHHHHHH
Q 034745 23 AVAYVA-DLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAV 62 (85)
Q Consensus 23 AiA~vc-~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~~ 62 (85)
+.++-| ..++..+++||..|...+..+.+-++|.+.+.+.
T Consensus 143 ~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V 183 (389)
T TIGR00381 143 EWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDV 183 (389)
T ss_pred HHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHH
Confidence 455555 4899999999999998765444345565544443
No 108
>PLN00011 cysteine synthase
Probab=36.83 E-value=37 Score=25.07 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 81 g~alA~~a~~~G~~~~iv 98 (323)
T PLN00011 81 GIGLACIGAARGYKVILV 98 (323)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 468999999999998765
No 109
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=36.74 E-value=30 Score=23.83 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=22.4
Q ss_pred EEeccHHHHHHHHHhcCCCeEEEEeee
Q 034745 16 IKDMEGAAVAYVADLFKVPAIFVKAVT 42 (85)
Q Consensus 16 ~vDME~aAiA~vc~~~~vPf~~iR~IS 42 (85)
...-|...|...+..+|||++.+|++.
T Consensus 55 ~~~~~~~~i~~~l~~~gI~~~~lKG~~ 81 (249)
T PF14907_consen 55 RLLAELQEILAALNANGIPVILLKGAA 81 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEchHH
Confidence 344577788899999999999999985
No 110
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=36.36 E-value=40 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 128 g~alA~~a~~~G~~~~Iv 145 (399)
T PRK08206 128 GRGVAWAAQQLGQKAVIY 145 (399)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 579999999999998775
No 111
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=36.03 E-value=56 Score=24.48 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=25.3
Q ss_pred HHHHHHHh---cCCcEEeccHHHHHHHHHhcCCCe
Q 034745 4 QDETSITA---NDATIKDMEGAAVAYVADLFKVPA 35 (85)
Q Consensus 4 ~~~~~~~~---~~a~~vDME~aAiA~vc~~~~vPf 35 (85)
+|...+++ .++-=+|||+.-+|.+|++.|+.-
T Consensus 230 dK~afLek~~a~GVrNIEMEss~FAs~t~~~G~ka 264 (308)
T KOG3728|consen 230 DKMAFLEKLHALGVRNIEMESSMFASVTQKAGVKA 264 (308)
T ss_pred hHHHHHHHHHHcCceeeehhHHHHHHHHHhcCcch
Confidence 34445544 478889999999999999999983
No 112
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=35.65 E-value=39 Score=24.91 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|..+|+|+.++
T Consensus 78 g~alA~~a~~~G~~~~i~ 95 (331)
T PRK03910 78 ARQTAAAAAKLGLKCVLL 95 (331)
T ss_pred HHHHHHHHHHhCCcEEEE
Confidence 589999999999998773
No 113
>PRK08638 threonine dehydratase; Validated
Probab=35.57 E-value=42 Score=25.08 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+||.++
T Consensus 87 g~alA~~aa~~G~~~~iv 104 (333)
T PRK08638 87 AQGVALSCALLGIDGKVV 104 (333)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 589999999999998883
No 114
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=35.47 E-value=42 Score=24.78 Aligned_cols=18 Identities=39% Similarity=0.374 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 79 g~alA~~a~~~G~~~~v~ 96 (317)
T TIGR02991 79 GRALAYAAAEEGVRATIC 96 (317)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 579999999999998874
No 115
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.47 E-value=78 Score=20.70 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=23.7
Q ss_pred EeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 034745 39 KAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFINGKRF 82 (85)
Q Consensus 39 R~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l~~~~~ 82 (85)
|+.||...+... .+++..+..-.....+.+++--++++|+.+++
T Consensus 8 ~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~ 52 (122)
T cd03572 8 KATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSP 52 (122)
T ss_pred HHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCC
Confidence 566776665543 45555444333234445566666666665543
No 116
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=35.28 E-value=32 Score=28.03 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=19.7
Q ss_pred CCcEEeccHHHHHHHHHhcCCCeEEE
Q 034745 13 DATIKDMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 13 ~a~~vDME~aAiA~vc~~~~vPf~~i 38 (85)
|+..---=++.||.++..++||++++
T Consensus 442 G~vysR~GTa~valvAna~nVPVlVC 467 (556)
T KOG1467|consen 442 GAVYSRVGTACVALVANAFNVPVLVC 467 (556)
T ss_pred cchhhhcchHHHHHHhcccCCCEEEE
Confidence 33333344688999999999999986
No 117
>PRK10342 glycerate kinase I; Provisional
Probab=34.95 E-value=2.2e+02 Score=22.21 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCeEEEEe
Q 034745 22 AAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ 40 (85)
..||+.|.++++|+++|=+
T Consensus 306 ~gVa~~A~~~~vPviai~G 324 (381)
T PRK10342 306 IGVANVAKKYHKPVIGIAG 324 (381)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 5799999999999999844
No 118
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=34.90 E-value=43 Score=25.54 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.9
Q ss_pred cHHHHHHHHHhcCCCeEEE
Q 034745 20 EGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~i 38 (85)
=|.|+|.+|...|+||.++
T Consensus 110 ~G~alA~~a~~~Gl~~~Iv 128 (385)
T TIGR00263 110 HGVATATAAALLGLDCEVY 128 (385)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3578999999999999887
No 119
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=34.74 E-value=2.2e+02 Score=22.13 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCeEEEEe
Q 034745 22 AAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ 40 (85)
..|++.|.++++|+++|=+
T Consensus 305 ~~Va~~A~~~~vPviai~G 323 (375)
T TIGR00045 305 VGVAKRAKKYGVPVIAIAG 323 (375)
T ss_pred HHHHHHHHHhCCeEEEEec
Confidence 6899999999999999844
No 120
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=34.72 E-value=44 Score=25.06 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|..+|+|+.++
T Consensus 60 g~alA~~a~~~G~~~~iv 77 (380)
T TIGR01127 60 AQGVAYAAKKFGIKAVIV 77 (380)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998863
No 121
>PRK06260 threonine synthase; Validated
Probab=34.28 E-value=44 Score=25.43 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=18.1
Q ss_pred eccHHHHHHHHHhcCCCeEEEE
Q 034745 18 DMEGAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 18 DME~aAiA~vc~~~~vPf~~iR 39 (85)
++ |+|+|.+|...|+|++++=
T Consensus 125 N~-g~alA~~aa~~G~~~~i~v 145 (397)
T PRK06260 125 NT-SASLAAYAARAGLKCYVLL 145 (397)
T ss_pred HH-HHHHHHHHHHcCCcEEEEE
Confidence 45 8999999999999988763
No 122
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.05 E-value=40 Score=20.43 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCCeEEEE
Q 034745 23 AVAYVADLFKVPAIFVK 39 (85)
Q Consensus 23 AiA~vc~~~~vPf~~iR 39 (85)
.+-+.|.++++||+..|
T Consensus 66 ~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 66 KVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHHcCCcEEEEC
Confidence 45678999999999886
No 123
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=33.75 E-value=47 Score=25.40 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+|+.++
T Consensus 106 g~a~A~~Aa~~G~~~~I~ 123 (376)
T TIGR01747 106 GRGVAWAAQQLGQKAVVY 123 (376)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998875
No 124
>PRK08198 threonine dehydratase; Provisional
Probab=33.67 E-value=47 Score=25.19 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|..|..+|+|+.++
T Consensus 82 g~alA~~a~~~G~~~~iv 99 (404)
T PRK08198 82 AQGVAYAASLLGIKATIV 99 (404)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998876
No 125
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=33.67 E-value=47 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 125 g~alA~~aa~~Gi~~~Iv 142 (396)
T TIGR03528 125 GRGVAWAANQLGQKSVVY 142 (396)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998886
No 126
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=33.17 E-value=49 Score=25.56 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCeEEEEeeecC
Q 034745 21 GAAVAYVADLFKVPAIFVKAVTDL 44 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR~ISD~ 44 (85)
++-+|-.|..|||||.|.=-+|..
T Consensus 251 TY~lAvlAk~~gIPFyVaAP~sTi 274 (346)
T COG0182 251 TYQLAVLAKHHGIPFYVAAPLSTI 274 (346)
T ss_pred HHHHHHHHHHcCCCeEEEcccCcc
Confidence 477899999999999998766654
No 127
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=33.12 E-value=48 Score=24.58 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=22.0
Q ss_pred hcCCcE-EeccH------HHHHHHHHhcCCCeEEEE
Q 034745 11 ANDATI-KDMEG------AAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 11 ~~~a~~-vDME~------aAiA~vc~~~~vPf~~iR 39 (85)
+.++.. +..+| .|+|.+|...|+|+.++.
T Consensus 63 ~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~ 98 (337)
T TIGR01274 63 AQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQ 98 (337)
T ss_pred HcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEe
Confidence 345666 44443 899999999999999874
No 128
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=33.03 E-value=47 Score=24.58 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|...|+|++++
T Consensus 81 g~alA~aa~~~G~~~~iv 98 (337)
T PRK12390 81 TRQVAAVAAHLGMKCVLV 98 (337)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 579999999999999997
No 129
>PRK07591 threonine synthase; Validated
Probab=32.39 E-value=50 Score=25.51 Aligned_cols=18 Identities=17% Similarity=0.015 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 149 g~alA~~aa~~Gl~~~I~ 166 (421)
T PRK07591 149 ANSVAAHAARAGLDSCVF 166 (421)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998876
No 130
>PRK08246 threonine dehydratase; Provisional
Probab=32.33 E-value=51 Score=24.19 Aligned_cols=18 Identities=50% Similarity=0.672 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 80 g~a~A~~a~~~G~~~~iv 97 (310)
T PRK08246 80 GLAVAYAAAALGVPATVF 97 (310)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998775
No 131
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=32.17 E-value=35 Score=25.43 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHhcCCCeEEEEee
Q 034745 19 MEGAAVAYVADLFKVPAIFVKAV 41 (85)
Q Consensus 19 ME~aAiA~vc~~~~vPf~~iR~I 41 (85)
.-+.+++.+|..++||++..+.-
T Consensus 68 ~~~~~v~~i~~~~~IP~I~~~~~ 90 (370)
T cd06389 68 KSVNTITSFCGTLHVSFITPSFP 90 (370)
T ss_pred HHHHHHHHhhccCCCCeeeecCC
Confidence 34678899999999999987554
No 132
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=32.08 E-value=50 Score=25.48 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|..|...|+|+.++
T Consensus 129 g~alA~~aa~~Gi~~~I~ 146 (398)
T TIGR03844 129 GRAFAEVSAITGQPVILV 146 (398)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 679999999999998886
No 133
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=31.51 E-value=53 Score=25.52 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 146 G~alA~~a~~~G~~~~Iv 163 (404)
T cd06447 146 GLSIGIMAAALGFKVTVH 163 (404)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998875
No 134
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=31.41 E-value=49 Score=25.36 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=16.8
Q ss_pred cHHHHHHHHHhcCCCeEEEE
Q 034745 20 EGAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~iR 39 (85)
=.+-+|-+|..+|+||.+.-
T Consensus 255 GTy~LAv~aKhhgipFyvaa 274 (354)
T KOG1468|consen 255 GTYQLAVLAKHHGIPFYVAA 274 (354)
T ss_pred hhhHHHHHHHhcCCceEEec
Confidence 35778999999999998864
No 135
>PRK06382 threonine dehydratase; Provisional
Probab=30.96 E-value=54 Score=25.05 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 85 g~a~A~aa~~~G~~~~iv 102 (406)
T PRK06382 85 AQGVAYAASINGIDAKIV 102 (406)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 568999999999998876
No 136
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=30.58 E-value=56 Score=25.11 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 034745 21 GAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR 39 (85)
|.|+|.+|...|+|+.++=
T Consensus 76 g~a~A~~a~~~G~~~~iv~ 94 (409)
T TIGR02079 76 AQGFAYACRHLGVHGTVFM 94 (409)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5689999999999988763
No 137
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=30.54 E-value=49 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.093 Sum_probs=17.7
Q ss_pred EEeccHHHHHHHHHhcCCCeEEEE
Q 034745 16 IKDMEGAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 16 ~vDME~aAiA~vc~~~~vPf~~iR 39 (85)
.-|=|..++|+-.+..|+||++|=
T Consensus 92 ~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 92 STDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp S--HHHHHHHHHHHHHT--EEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEE
Confidence 345588999999999999999876
No 138
>PRK06186 hypothetical protein; Validated
Probab=30.28 E-value=49 Score=23.91 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCCeEEE
Q 034745 23 AVAYVADLFKVPAIFV 38 (85)
Q Consensus 23 AiA~vc~~~~vPf~~i 38 (85)
..++.|..+++||+-|
T Consensus 73 ~ai~~Are~~iP~LGI 88 (229)
T PRK06186 73 TAIRFARENGIPFLGT 88 (229)
T ss_pred HHHHHHHHcCCCeEee
Confidence 4578999999999865
No 139
>PRK05638 threonine synthase; Validated
Probab=30.28 E-value=56 Score=25.27 Aligned_cols=18 Identities=28% Similarity=0.121 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|+|+|.+|...|+|+.++
T Consensus 124 g~alA~~aa~~G~~~~i~ 141 (442)
T PRK05638 124 AASVAAYSARAGKEAFVV 141 (442)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 689999999999998876
No 140
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=30.26 E-value=1.6e+02 Score=22.75 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=16.6
Q ss_pred cHHHHHHHHHhcCCCeEEE
Q 034745 20 EGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~i 38 (85)
|-+.++.-|+++|+|.++.
T Consensus 180 ~l~~i~~ea~~~GlPlv~~ 198 (348)
T PRK09250 180 EISEAFEEAHELGLATVLW 198 (348)
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 6788999999999998873
No 141
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=30.08 E-value=56 Score=24.16 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|...|+|+.++
T Consensus 84 g~alA~~a~~~G~~~~iv 101 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLV 101 (329)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 368999999999998765
No 142
>PRK08329 threonine synthase; Validated
Probab=29.93 E-value=59 Score=24.31 Aligned_cols=18 Identities=6% Similarity=-0.106 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 116 g~alA~~aa~~G~~~~v~ 133 (347)
T PRK08329 116 ALSLALYSLSEGIKVHVF 133 (347)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 789999999999999887
No 143
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=29.34 E-value=59 Score=24.58 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
++-+|..|+..++||+++
T Consensus 210 T~~lA~~A~e~~~Pf~v~ 227 (301)
T COG1184 210 TSPLALAARELRVPFYVV 227 (301)
T ss_pred hHHHHHHHHHhCCCEEEE
Confidence 467899999999999986
No 144
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=29.25 E-value=1.2e+02 Score=21.91 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=24.9
Q ss_pred HHHHHhc--CCcEEeccHHHHHHHHHhcCCCeEEEE
Q 034745 6 ETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 6 ~~~~~~~--~a~~vDME~aAiA~vc~~~~vPf~~iR 39 (85)
.++++++ +....|.+-.+ ..+|...|||++.|-
T Consensus 86 ~~~l~~~~pDlVi~d~~~~~-~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 86 INIIREYNPDLIISDFEYST-VVAAKLLKIPVICIS 120 (321)
T ss_pred HHHHHhcCCCEEEECCchHH-HHHHHhcCCCEEEEe
Confidence 3455666 46677877766 789999999999774
No 145
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=28.87 E-value=20 Score=27.73 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCCeEEEEeee
Q 034745 22 AAVAYVADLFKVPAIFVKAVT 42 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~IS 42 (85)
..|++.|.++++|+++|=+-.
T Consensus 306 ~~Va~~A~~~~vPviav~G~~ 326 (377)
T PF02595_consen 306 GGVARLAKKHGVPVIAVAGSV 326 (377)
T ss_dssp HHHHCCHCCTT--EEEEECEC
T ss_pred HHHHHHHHHcCCcEEEEeCCC
Confidence 578999999999999886553
No 146
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=28.80 E-value=60 Score=24.77 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 74 g~alA~~a~~~G~~~~iv 91 (454)
T TIGR01137 74 GIGLALVAAIKGYKCIIV 91 (454)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 568999999999998764
No 147
>PLN02618 tryptophan synthase, beta chain
Probab=28.58 E-value=62 Score=25.24 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCeEEEEe
Q 034745 22 AAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ 40 (85)
.|+|.+|..+|+||.++=.
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~ 151 (410)
T PLN02618 133 VATATVCARFGLECIVYMG 151 (410)
T ss_pred HHHHHHHHHcCCcEEEEEc
Confidence 8999999999999988643
No 148
>PRK08639 threonine dehydratase; Validated
Probab=28.47 E-value=64 Score=24.82 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 034745 21 GAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR 39 (85)
|-|+|.+|...|+|+.++=
T Consensus 85 g~alA~~a~~~G~~~~Ivm 103 (420)
T PRK08639 85 AQGVAYACRHLGIPGVIFM 103 (420)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5689999999999988763
No 149
>PRK08223 hypothetical protein; Validated
Probab=28.24 E-value=60 Score=24.21 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=23.0
Q ss_pred HHHHhcC--CcEEe----ccHHHHHHHHHhcCCCeEEE
Q 034745 7 TSITAND--ATIKD----MEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 7 ~~~~~~~--a~~vD----ME~aAiA~vc~~~~vPf~~i 38 (85)
+++..+. +++.| -.-..+-..|..+++||+.-
T Consensus 113 ~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 113 AFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 4455555 44555 35688999999999998873
No 150
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=27.82 E-value=68 Score=24.44 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+||.++
T Consensus 123 G~alA~~a~~~G~~~~iv 140 (368)
T PLN02556 123 GISLAFMAAMKGYKMILT 140 (368)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 468999999999999988
No 151
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=27.29 E-value=94 Score=21.19 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCCeEE
Q 034745 21 GAAVAYVADLFKVPAIF 37 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~ 37 (85)
+.++.++....++|.+.
T Consensus 78 s~GL~~lsl~~~~PVi~ 94 (151)
T TIGR01506 78 STGLIQVQLMTNKHVID 94 (151)
T ss_pred HHHHHHHHhhhCCCEEE
Confidence 46899999999999998
No 152
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=27.25 E-value=24 Score=23.82 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=23.6
Q ss_pred eccHHHHHHHHHhcCCCeEEEEeeecCCC
Q 034745 18 DMEGAAVAYVADLFKVPAIFVKAVTDLVD 46 (85)
Q Consensus 18 DME~aAiA~vc~~~~vPf~~iR~ISD~a~ 46 (85)
..++.+++.+|..+++|++....-+....
T Consensus 81 s~~~~~v~~~~~~~~iP~is~~~~~~~~~ 109 (298)
T cd06269 81 SSSAEAVASLLGALHIPQISYSATSPLLS 109 (298)
T ss_pred chHHHHHHHHhccCCCcEEecccCchhhc
Confidence 45677889999999999999987766543
No 153
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=27.08 E-value=68 Score=20.25 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=15.9
Q ss_pred cHHHHHHHHHhcCCCeEE
Q 034745 20 EGAAVAYVADLFKVPAIF 37 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~ 37 (85)
++..|-+.|..++|||+.
T Consensus 89 dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 89 DVKALLRLCDVYNIPLAT 106 (115)
T ss_pred cHHHHHHHHHHcCCCEEE
Confidence 588999999999999973
No 154
>PLN03013 cysteine synthase
Probab=27.06 E-value=70 Score=25.23 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|++++
T Consensus 187 G~ALA~~a~~~G~~~~Vv 204 (429)
T PLN03013 187 GIGLAFIAASRGYRLILT 204 (429)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999999886
No 155
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=26.80 E-value=71 Score=24.88 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 034745 21 GAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR 39 (85)
|.|+|.+|..+|++|.++=
T Consensus 130 G~alA~aaa~~Gl~~~V~m 148 (419)
T TIGR01415 130 GSALSLAGALFGLECKVFM 148 (419)
T ss_pred HHHHHHHHHHcCCcEEEEE
Confidence 6799999999999987653
No 156
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=26.67 E-value=52 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeeecC
Q 034745 19 MEGAAVAYVADLFKVPAIFVKAVTDL 44 (85)
Q Consensus 19 ME~aAiA~vc~~~~vPf~~iR~ISD~ 44 (85)
-++.+++.+|..++||++..-+.++.
T Consensus 73 ~~~~~~~~~~~~~~iP~i~~~~~~~~ 98 (382)
T cd06380 73 SSVNTLTSYSDALHVPFITPSFPTND 98 (382)
T ss_pred HHHHHHHHHHhcCCCCeEecCCCccc
Confidence 35668899999999999998766554
No 157
>PLN02356 phosphateglycerate kinase
Probab=26.66 E-value=71 Score=25.13 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|++++
T Consensus 116 g~alA~~aa~~G~~~~iv 133 (423)
T PLN02356 116 AISLATVAPAYGCKCHVV 133 (423)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 779999999999999887
No 158
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.50 E-value=1.4e+02 Score=22.57 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=24.2
Q ss_pred cEEeccHHHHHHHHHhcCCCeEEEEeeecCCC
Q 034745 15 TIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 46 (85)
Q Consensus 15 ~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~ 46 (85)
.--.+|...+.+.....|||++.|=+ |+.+
T Consensus 326 ~~~~~e~~~lk~~l~e~GIP~L~iE~--D~~~ 355 (377)
T TIGR03190 326 DPHEGDYPDLKRHLEANGIPTLFLEF--DITN 355 (377)
T ss_pred CcchhhhHHHHHHHHHCCCCEEEEec--CCCC
Confidence 33478999999999999999998865 7764
No 159
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=26.50 E-value=59 Score=19.54 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=15.6
Q ss_pred cHHHHHHHHHhcCCCeE
Q 034745 20 EGAAVAYVADLFKVPAI 36 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~ 36 (85)
.++.+-+.|-.++||++
T Consensus 78 dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 78 DGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHHHHHTTSHEE
T ss_pred CcHHHHHHHHHcCCCCc
Confidence 68999999999999986
No 160
>PRK06455 riboflavin synthase; Provisional
Probab=26.47 E-value=2.2e+02 Score=19.54 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 034745 21 GAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVI 74 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~~s~~~~~~v~~~l 74 (85)
+.++.++...+++|.+-+=.=-|-+.++ ++..+.+...++.=+.-+..+|
T Consensus 80 S~GL~~lsL~t~~PVi~v~vhede~~~~----~~l~~~~~~r~~~h~~n~~~~~ 129 (155)
T PRK06455 80 SIGLIMAQLMTNKHIIEVFVHEDEAKDE----KELKELAEDRAREHAENLVKLL 129 (155)
T ss_pred HHHHHHHHhhhCCCEEEEEecccccCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999887766666433 3444444444443344444443
No 161
>PRK08197 threonine synthase; Validated
Probab=26.29 E-value=73 Score=24.21 Aligned_cols=18 Identities=33% Similarity=0.178 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 139 g~alA~~aa~~G~~~~v~ 156 (394)
T PRK08197 139 GAAWAAYAARAGIRATIF 156 (394)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 689999999999998887
No 162
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=26.24 E-value=74 Score=24.72 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|+||.++
T Consensus 123 G~A~A~aaa~~Gl~~~I~ 140 (402)
T PRK13028 123 GVATATAAALFGLECEIY 140 (402)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 678999999999999987
No 163
>PRK08526 threonine dehydratase; Provisional
Probab=26.17 E-value=75 Score=24.48 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|...|+|+.++
T Consensus 80 g~avA~aa~~~Gi~~~Iv 97 (403)
T PRK08526 80 AQGVAISAKKFGIKAVIV 97 (403)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998874
No 164
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.97 E-value=75 Score=19.70 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHhcCCCeEE
Q 034745 19 MEGAAVAYVADLFKVPAIF 37 (85)
Q Consensus 19 ME~aAiA~vc~~~~vPf~~ 37 (85)
=+++.+-..|-.++||++.
T Consensus 86 ~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 86 EDGTALLRLARLYKIPVTT 104 (112)
T ss_pred CChHHHHHHHHHcCCCEEE
Confidence 3499999999999999873
No 165
>PRK02991 D-serine dehydratase; Provisional
Probab=25.88 E-value=76 Score=24.95 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|++|...|+|+.++
T Consensus 169 G~alA~aA~~~G~~~tIv 186 (441)
T PRK02991 169 GLSIGIMSAALGFKVTVH 186 (441)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998875
No 166
>PRK06450 threonine synthase; Validated
Probab=25.86 E-value=78 Score=23.75 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|+|+|.+|...|+|+.++
T Consensus 109 g~slA~~aa~~G~~~~i~ 126 (338)
T PRK06450 109 GASIAAYGAAAGIEVKIF 126 (338)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 789999999999998765
No 167
>PRK08227 autoinducer 2 aldolase; Validated
Probab=25.83 E-value=2.7e+02 Score=20.46 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=16.0
Q ss_pred cHHHHHHHHHhcCCCeEE
Q 034745 20 EGAAVAYVADLFKVPAIF 37 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~ 37 (85)
+-+.++.-|+++|+|.+.
T Consensus 128 ~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 128 NIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHHHHHHhCCcEEE
Confidence 567889999999999887
No 168
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=25.77 E-value=71 Score=23.43 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHhcCCCeEEEEeeec
Q 034745 19 MEGAAVAYVADLFKVPAIFVKAVTD 43 (85)
Q Consensus 19 ME~aAiA~vc~~~~vPf~~iR~ISD 43 (85)
|..++++.+|..+++|++..-+.+.
T Consensus 96 ~~~~~v~~~~~~~~iP~Is~~a~~~ 120 (377)
T cd06379 96 LTPTSVSYTAGFYRIPVVGISTRDS 120 (377)
T ss_pred ccHHHHHHHhhCCCCcEEecccCCc
Confidence 3677889999999999998655444
No 169
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=25.65 E-value=77 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=24.2
Q ss_pred HHHhc-CCcEEeccHHHHHHHHHhcCCCeEEE
Q 034745 8 SITAN-DATIKDMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 8 ~~~~~-~a~~vDME~aAiA~vc~~~~vPf~~i 38 (85)
++.+. .|..+|||+. +-|.+..+|+.++.|
T Consensus 635 lLDEcTsAvsidvE~~-i~~~ak~~gi~llsi 665 (728)
T KOG0064|consen 635 LLDECTSAVSIDVEGK-IFQAAKDAGISLLSI 665 (728)
T ss_pred hhhhhhcccccchHHH-HHHHHHhcCceEEEe
Confidence 34444 5999999996 569999999999976
No 170
>PLN02569 threonine synthase
Probab=25.61 E-value=71 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.3
Q ss_pred EEeccHHHHHHHHHhcCCCeEEEE
Q 034745 16 IKDMEGAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 16 ~vDME~aAiA~vc~~~~vPf~~iR 39 (85)
.=++ |+|+|.+|...|+|++++=
T Consensus 195 SGN~-GaAlAayaa~~Gl~~~I~v 217 (484)
T PLN02569 195 TGDT-SAALSAYCAAAGIPSIVFL 217 (484)
T ss_pred CcHH-HHHHHHHHHhcCCeEEEEE
Confidence 3456 8999999999999988863
No 171
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=25.45 E-value=34 Score=19.28 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.6
Q ss_pred cHHHHHHHHHhcCCC
Q 034745 20 EGAAVAYVADLFKVP 34 (85)
Q Consensus 20 E~aAiA~vc~~~~vP 34 (85)
+|..+.++|..+||+
T Consensus 22 ~g~sv~~va~~~gi~ 36 (76)
T PF01527_consen 22 SGESVSEVAREYGIS 36 (76)
T ss_dssp HHCHHHHHHHHHTS-
T ss_pred CCCceEeeecccccc
Confidence 578899999999986
No 172
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=25.39 E-value=41 Score=17.93 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCCeE
Q 034745 22 AAVAYVADLFKVPAI 36 (85)
Q Consensus 22 aAiA~vc~~~~vPf~ 36 (85)
-++-++|..||||.-
T Consensus 17 ~S~r~AA~~ygVp~s 31 (45)
T PF05225_consen 17 MSIRKAAKKYGVPRS 31 (45)
T ss_dssp S-HHHHHHHHT--HH
T ss_pred CCHHHHHHHHCcCHH
Confidence 567888999999953
No 173
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=25.30 E-value=64 Score=23.43 Aligned_cols=25 Identities=4% Similarity=0.262 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCeEEEEeeecCC
Q 034745 21 GAAVAYVADLFKVPAIFVKAVTDLV 45 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR~ISD~a 45 (85)
+.+++.+|..++||++..-+.++..
T Consensus 79 ~~~~~~v~~~~~iP~Is~~~~~~~~ 103 (362)
T cd06367 79 AQILDFTSAQTRIPVVGISGRESIF 103 (362)
T ss_pred hhhhhhhhhhhcCcEEEeecccccc
Confidence 6788999999999999987777654
No 174
>PLN02293 adenine phosphoribosyltransferase
Probab=25.10 E-value=88 Score=21.59 Aligned_cols=27 Identities=7% Similarity=-0.018 Sum_probs=22.4
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEe
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKA 40 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~ 40 (85)
+.++|.-|..+|. +|...|+||+.+|-
T Consensus 66 Ivg~e~~Gi~lA~~lA~~Lg~p~v~~rK 93 (187)
T PLN02293 66 VAGIEARGFIFGPPIALAIGAKFVPLRK 93 (187)
T ss_pred EEEeCCCchHHHHHHHHHHCCCEEEEEe
Confidence 6678888887776 68899999998885
No 175
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=25.06 E-value=79 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=18.9
Q ss_pred cHHHHHHHHHhcCCCeEEEEeeec
Q 034745 20 EGAAVAYVADLFKVPAIFVKAVTD 43 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~iR~ISD 43 (85)
=|.|+|.+|..+|++|.++=.-.|
T Consensus 118 hG~A~A~~aa~~Gl~c~I~mp~~d 141 (397)
T PRK04346 118 HGVATATAAALLGLECVIYMGAED 141 (397)
T ss_pred HHHHHHHHHHHcCCcEEEEecCCc
Confidence 367899999999999988654333
No 176
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=25.03 E-value=77 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|..+|++|.++
T Consensus 139 G~alA~aaa~~Gl~~~V~ 156 (427)
T PRK12391 139 GSALALACALFGLECTVF 156 (427)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 679999999999998876
No 177
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=24.98 E-value=33 Score=24.67 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=23.1
Q ss_pred eccHHHHHHHHHhcCCCeEEEEeeecCC
Q 034745 18 DMEGAAVAYVADLFKVPAIFVKAVTDLV 45 (85)
Q Consensus 18 DME~aAiA~vc~~~~vPf~~iR~ISD~a 45 (85)
.-++.+++.+|..+++|++..-+.++..
T Consensus 76 s~~~~a~~~~~~~~~ip~i~~~~~~~~l 103 (350)
T cd06366 76 SSVAEFVAEVANEWNVPVLSFAATSPSL 103 (350)
T ss_pred HHHHHHHHHHhhcCCeeEEeccCCCccc
Confidence 4466788999999999999988877655
No 178
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=24.91 E-value=29 Score=26.06 Aligned_cols=26 Identities=4% Similarity=0.207 Sum_probs=20.7
Q ss_pred cHHHHHHHHHhcCCCeEEEEeeecCC
Q 034745 20 EGAAVAYVADLFKVPAIFVKAVTDLV 45 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~iR~ISD~a 45 (85)
++.-+..+|.++.||++.+.+.|...
T Consensus 77 ~a~~~s~~~~~~~vP~is~~~~s~~~ 102 (362)
T cd06378 77 VAQILDFISAQTFLPILGIHGGSSMI 102 (362)
T ss_pred cchhhhhhhhceeccEEEeccccccc
Confidence 44578888999999999998777643
No 179
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=24.78 E-value=81 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+++.++
T Consensus 95 g~alA~~a~~~G~~~~iv 112 (365)
T cd06446 95 GVATATACALFGLECEIY 112 (365)
T ss_pred HHHHHHHHHHhCCCeEEE
Confidence 578999999999998876
No 180
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=24.49 E-value=62 Score=24.40 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=29.6
Q ss_pred EEeccHHHHHHHHHhcCCCeEEEEeeec---CCCC--CCccHHHHHHHH
Q 034745 16 IKDMEGAAVAYVADLFKVPAIFVKAVTD---LVDG--DKPTAEEFMQNL 59 (85)
Q Consensus 16 ~vDME~aAiA~vc~~~~vPf~~iR~ISD---~a~~--~~~~~~~f~~~~ 59 (85)
.+|++.+|+|.=|-.+|+|.+.-..+-- ..+. ..++++++.+.+
T Consensus 231 ~~s~~~~A~aaGai~~GfPVI~d~~~pei~~~P~~~~~~~~~d~iv~~a 279 (287)
T cd01917 231 ELDMVKTAAAAGAIFTGFPVITDQELPEDKQIPDWFFSSSDYDKIVQNA 279 (287)
T ss_pred ccCHHHHHHHhhHHHcCCCEEeCCCCcccccCccceecCCCHHHHHHHH
Confidence 6799999999999999999876543331 1111 122577776643
No 181
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=24.29 E-value=86 Score=19.87 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCeEEEEee
Q 034745 21 GAAVAYVADLFKVPAIFVKAV 41 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR~I 41 (85)
...+...|.++++||+.....
T Consensus 103 ~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 103 RRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred HHHHHHHHHHcCCCEEEEcCC
Confidence 345889999999999976553
No 182
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=24.11 E-value=63 Score=24.19 Aligned_cols=22 Identities=5% Similarity=-0.026 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHhcCCCeEEEEe
Q 034745 19 MEGAAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 19 ME~aAiA~vc~~~~vPf~~iR~ 40 (85)
..+.+++.+|...+||++....
T Consensus 74 ~~~~~v~~i~~~~~IP~I~~~~ 95 (371)
T cd06388 74 RSVHTLTSFCSALHISLITPSF 95 (371)
T ss_pred HHHHHHHHHhhCCCCCeeecCc
Confidence 4678899999999999998754
No 183
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=24.06 E-value=80 Score=19.14 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=13.8
Q ss_pred cHHHHHHHHHhcCCCeEE
Q 034745 20 EGAAVAYVADLFKVPAIF 37 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~~ 37 (85)
|+-.+++.|..+|+|+..
T Consensus 34 ~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 34 EALRIAALAEAHGIPVMP 51 (111)
T ss_dssp HHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHhCCCEEe
Confidence 456789999999999863
No 184
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=23.94 E-value=1.5e+02 Score=20.71 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=15.5
Q ss_pred CCCeEEEEeeecCCCCCCc-cHHHHHHHHHHH
Q 034745 32 KVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAV 62 (85)
Q Consensus 32 ~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~ 62 (85)
+.|-|-||.+||.-...-. +.+++.....++
T Consensus 2 ~~pkIGIrp~iDGR~~gVresLe~~tm~ma~~ 33 (171)
T PF07881_consen 2 NKPKIGIRPTIDGRRGGVRESLEEQTMNMAKA 33 (171)
T ss_dssp B--EEEEEEB----TTTHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeecCCchhHHHHHHHHHHHHHHH
Confidence 4688999999999876533 445554444443
No 185
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=23.84 E-value=94 Score=22.27 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=21.5
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEe
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKA 40 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~ 40 (85)
+.+++--|-.+|. ++...|+||+++|=
T Consensus 115 Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk 142 (238)
T PRK08558 115 VLTAATDGIPLAVAIASYFGADLVYAKK 142 (238)
T ss_pred EEEECcccHHHHHHHHHHHCcCEEEEEe
Confidence 5566667777776 89999999999865
No 186
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=23.67 E-value=87 Score=24.95 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|..|...|+|++++
T Consensus 77 a~~vA~aa~~~Gi~~~Iv 94 (499)
T TIGR01124 77 AQGVAFSAARLGLKALIV 94 (499)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 568999999999998764
No 187
>PRK12483 threonine dehydratase; Reviewed
Probab=23.64 E-value=84 Score=25.31 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|..|...|+|+.++
T Consensus 97 a~gvA~aA~~lGi~~~Iv 114 (521)
T PRK12483 97 AQGVALAAARLGVKAVIV 114 (521)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 568999999999998875
No 188
>PRK09224 threonine dehydratase; Reviewed
Probab=23.55 E-value=87 Score=24.87 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
+.|+|.+|...|+|++++
T Consensus 80 a~avA~aa~~lGi~~~Iv 97 (504)
T PRK09224 80 AQGVALSAARLGIKAVIV 97 (504)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 568999999999998764
No 189
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=23.44 E-value=88 Score=21.07 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=23.5
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEee
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKAV 41 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~I 41 (85)
+.+.|+.|..+|. ++...|+||+.+|--
T Consensus 60 Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~ 88 (170)
T PRK13811 60 VAGVAVGGVPLAVAVSLAAGKPYAIIRKE 88 (170)
T ss_pred EEecCcCcHHHHHHHHHHHCCCEEEEecC
Confidence 6788999988876 478889999999964
No 190
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=23.15 E-value=58 Score=25.10 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred eccHHHHHHHHHhcCCCeEEE
Q 034745 18 DMEGAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 18 DME~aAiA~vc~~~~vPf~~i 38 (85)
-.++..|..+|...+||++.+
T Consensus 72 ~~~a~~v~sic~~l~VP~is~ 92 (400)
T cd06392 72 CASANALQSLTDAMHIPHLFV 92 (400)
T ss_pred hhHHHHHHHHhccCcCCcEee
Confidence 477888999999999999988
No 191
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=22.90 E-value=93 Score=24.40 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 034745 21 GAAVAYVADLFKVPAIFV 38 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~i 38 (85)
|.|+|.+|...|+|+.++
T Consensus 164 G~slA~~Aa~lG~~~~Iv 181 (431)
T TIGR02035 164 GLSIGIISAALGFQVTVH 181 (431)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 678999999999999886
No 192
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=22.89 E-value=92 Score=21.97 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCeEEE
Q 034745 22 AAVAYVADLFKVPAIFV 38 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~i 38 (85)
.+..++|.++|+|++.+
T Consensus 14 ~~~~~~a~~~~i~~~~~ 30 (269)
T PF05159_consen 14 RAAIEVAKELGIPVIFF 30 (269)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 34568899999998874
No 193
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=22.53 E-value=1.6e+02 Score=22.30 Aligned_cols=19 Identities=21% Similarity=-0.039 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 034745 21 GAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR 39 (85)
.+...-+||++|||++..-
T Consensus 48 p~~~idaAHknGV~Vlgti 66 (339)
T cd06547 48 PADWINAAHRNGVPVLGTF 66 (339)
T ss_pred CcHHHHHHHhcCCeEEEEE
Confidence 3567789999999999855
No 194
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=22.14 E-value=1e+02 Score=21.22 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.5
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEE
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVK 39 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR 39 (85)
+.+.|+.|..+|. +|...++|+..+|
T Consensus 55 Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 55 IVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred EEEEccccHHHHHHHHHhhCCCEEEec
Confidence 7789999999998 8899999998887
No 195
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.01 E-value=1.4e+02 Score=21.32 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=24.5
Q ss_pred CcEEeccH--HHHHHHHHhcCCCeEEEEeeecCCCCC
Q 034745 14 ATIKDMEG--AAVAYVADLFKVPAIFVKAVTDLVDGD 48 (85)
Q Consensus 14 a~~vDME~--aAiA~vc~~~~vPf~~iR~ISD~a~~~ 48 (85)
++|+|.=. ..+...|+.+++||+..-+.-...|+.
T Consensus 107 vdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~ 143 (231)
T cd00755 107 VDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPT 143 (231)
T ss_pred EEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCC
Confidence 55566543 358889999999999986655554443
No 196
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=21.98 E-value=44 Score=16.75 Aligned_cols=50 Identities=12% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCeEEEEeeecCCCCC---CccHHHHHHHHHHHHHHHHHHHHH
Q 034745 23 AVAYVADLFKVPAIFVKAVTDLVDGD---KPTAEEFMQNLVAVTAALEQSVSQ 72 (85)
Q Consensus 23 AiA~vc~~~~vPf~~iR~ISD~a~~~---~~~~~~f~~~~~~~s~~~~~~v~~ 72 (85)
-++.+++..+-|+..+.+..+..... .++...+...+...+.....++-.
T Consensus 7 ~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 59 (65)
T cd00082 7 FLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLIND 59 (65)
T ss_pred HHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887775554433211 113445545444444443433333
No 197
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=21.73 E-value=71 Score=23.75 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=23.9
Q ss_pred EeccHHHHHHHHHhcCCCeEEEEeeecCC
Q 034745 17 KDMEGAAVAYVADLFKVPAIFVKAVTDLV 45 (85)
Q Consensus 17 vDME~aAiA~vc~~~~vPf~~iR~ISD~a 45 (85)
..-++.+++.+|..++||++.--+.+...
T Consensus 76 ~s~~~~~va~ia~~~~iP~Is~~a~~~~~ 104 (387)
T cd06386 76 CEYAAAPVARLASHWNIPMISAGALAAGF 104 (387)
T ss_pred CccHHHHHHHHHHhCCCcEEccccCchhh
Confidence 46788999999999999999876665443
No 198
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.70 E-value=1.7e+02 Score=19.57 Aligned_cols=13 Identities=0% Similarity=0.069 Sum_probs=11.2
Q ss_pred hcCCCeEEEEeee
Q 034745 30 LFKVPAIFVKAVT 42 (85)
Q Consensus 30 ~~~vPf~~iR~IS 42 (85)
..|++|++||+..
T Consensus 20 ~~g~~fviikate 32 (177)
T cd06523 20 SKQLDLVIIRVQY 32 (177)
T ss_pred hCCCCEEEEEEeC
Confidence 5799999999964
No 199
>PRK05434 phosphoglyceromutase; Provisional
Probab=21.62 E-value=4.1e+02 Score=21.49 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHHH
Q 034745 22 AAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVA 61 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~ 61 (85)
.|+...|..+|++=+.|=++.|..|-...+...|++.+..
T Consensus 131 ~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~ 170 (507)
T PRK05434 131 FALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEELEA 170 (507)
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHHHHH
Confidence 5788999999999999999999998766556666655443
No 200
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=21.45 E-value=4e+02 Score=21.60 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHHH
Q 034745 22 AAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVA 61 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~ 61 (85)
.|+...|.+.|++=+.|=++.|..|-...+...|++.+.+
T Consensus 127 ~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~ 166 (501)
T TIGR01307 127 IALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQLQA 166 (501)
T ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHHHHH
Confidence 5788999999999999999999998766556677655443
No 201
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=21.04 E-value=86 Score=23.36 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 034745 21 GAAVAYVADLFKVPAIFVK 39 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR 39 (85)
+.+++.+|...+||++...
T Consensus 79 ~~~v~~i~~~~~VP~Is~~ 97 (333)
T cd06394 79 SSIVSHICGEKEIPHFKVG 97 (333)
T ss_pred HHHHHHHhhccCCceEEec
Confidence 4599999999999999874
No 202
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=20.99 E-value=1.4e+02 Score=19.98 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=23.3
Q ss_pred CcEEeccHHHHHH-HHHhcCCCeEEEEee
Q 034745 14 ATIKDMEGAAVAY-VADLFKVPAIFVKAV 41 (85)
Q Consensus 14 a~~vDME~aAiA~-vc~~~~vPf~~iR~I 41 (85)
+.+++.-|..+|. ++...++|++.+|--
T Consensus 55 Ivgv~~~Gi~~a~~la~~l~~p~~~~rk~ 83 (175)
T PRK02304 55 IVGIEARGFIFGAALAYKLGIGFVPVRKP 83 (175)
T ss_pred EEEEccchHHHHHHHHHHhCCCEEEEEcC
Confidence 6678888888887 788999999988753
No 203
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=20.92 E-value=85 Score=23.54 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=19.6
Q ss_pred eccHHHHHHHHHhcCCCeEEEEe
Q 034745 18 DMEGAAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 18 DME~aAiA~vc~~~~vPf~~iR~ 40 (85)
-..+..|+.+|..++||++....
T Consensus 77 s~~a~~V~si~~~~~IP~Is~s~ 99 (368)
T cd06383 77 CGDASEIKSVTGALGIPTFSASY 99 (368)
T ss_pred chhHHHHHHHHhccCCCEEEccC
Confidence 46778899999999999998744
No 204
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=20.90 E-value=1.3e+02 Score=22.52 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=25.5
Q ss_pred CcEEec--cHHHHHHHHHhcCCCeEEEEeeecCCCCC
Q 034745 14 ATIKDM--EGAAVAYVADLFKVPAIFVKAVTDLVDGD 48 (85)
Q Consensus 14 a~~vDM--E~aAiA~vc~~~~vPf~~iR~ISD~a~~~ 48 (85)
++|.|= =-++++..|+.+++|++..=+.....|+.
T Consensus 126 IDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPT 162 (263)
T COG1179 126 IDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPT 162 (263)
T ss_pred EEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCc
Confidence 555553 34688889999999999877766655553
No 205
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=20.71 E-value=1.1e+02 Score=22.51 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCcEEe-ccHHHHHHHHHhcCCCeEEEEeeecCC
Q 034745 13 DATIKD-MEGAAVAYVADLFKVPAIFVKAVTDLV 45 (85)
Q Consensus 13 ~a~~vD-ME~aAiA~vc~~~~vPf~~iR~ISD~a 45 (85)
..++.| |..++ +.+|.+.|||++.+-......
T Consensus 106 Dlvi~d~~~~~~-~~~A~~~giP~v~~~~~~~~~ 138 (401)
T cd03784 106 DLVVADPLAFAG-AVAAEALGIPAVRLLLGPDTP 138 (401)
T ss_pred CEEEeCcHHHHH-HHHHHHhCCCeEEeecccCCc
Confidence 477788 66544 778999999999988766543
No 206
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=20.69 E-value=1.2e+02 Score=20.21 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeee
Q 034745 21 GAAVAYVADLFKVPAIFVKAVT 42 (85)
Q Consensus 21 ~aAiA~vc~~~~vPf~~iR~IS 42 (85)
..-+...|..+|+|+.+.+.--
T Consensus 47 ~~~v~~~~~~~~i~~~~~~~~~ 68 (182)
T PF01171_consen 47 AEFVEEICEQLGIPLYIVRIDE 68 (182)
T ss_dssp HHHHHHHHHHTT-EEEEEE--C
T ss_pred HHHHHHHHHhcCCceEEEEeee
Confidence 3568899999999999888776
No 207
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=20.60 E-value=1.6e+02 Score=15.80 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCCeEEEEeeecC
Q 034745 22 AAVAYVADLFKVPAIFVKAVTDL 44 (85)
Q Consensus 22 aAiA~vc~~~~vPf~~iR~ISD~ 44 (85)
..++.+|...|||.-++.+..-.
T Consensus 14 ~l~~~llr~~GIpar~v~g~~~~ 36 (68)
T smart00460 14 ALFVALLRSLGIPARVVSGYLKA 36 (68)
T ss_pred HHHHHHHHHCCCCeEEEeeeecC
Confidence 34567899999999999886443
No 208
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=20.55 E-value=1e+02 Score=20.36 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=15.4
Q ss_pred cHHHHHHHHHhcCCCeE
Q 034745 20 EGAAVAYVADLFKVPAI 36 (85)
Q Consensus 20 E~aAiA~vc~~~~vPf~ 36 (85)
++..|-+.|..++||++
T Consensus 94 D~~~IRR~Av~~~IP~~ 110 (142)
T PRK05234 94 DVKALLRLADVWNIPVA 110 (142)
T ss_pred hHHHHHHHHHHcCCCEE
Confidence 47799999999999997
No 209
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=20.18 E-value=77 Score=16.55 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=10.0
Q ss_pred cHHHHHHHHHhcCCC
Q 034745 20 EGAAVAYVADLFKVP 34 (85)
Q Consensus 20 E~aAiA~vc~~~~vP 34 (85)
+|..+.++|..+||.
T Consensus 20 ~G~si~~IA~~~gvs 34 (45)
T PF02796_consen 20 EGMSIAEIAKQFGVS 34 (45)
T ss_dssp TT--HHHHHHHTTS-
T ss_pred CCCCHHHHHHHHCcC
Confidence 567888899988875
No 210
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.18 E-value=1.3e+02 Score=18.35 Aligned_cols=22 Identities=14% Similarity=-0.069 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHhcCCCeEEEEe
Q 034745 19 MEGAAVAYVADLFKVPAIFVKA 40 (85)
Q Consensus 19 ME~aAiA~vc~~~~vPf~~iR~ 40 (85)
-|....++.|+++|+|.++|=.
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeC
Confidence 6777889999999999998754
Done!