Query 034746
Match_columns 85
No_of_seqs 76 out of 78
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:02:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12273 RCR: Chitin synthesis 80.2 2.2 4.7E-05 29.0 3.0 32 40-71 6-40 (130)
2 PF07172 GRP: Glycine rich pro 69.4 3.4 7.4E-05 27.7 1.7 22 44-65 7-28 (95)
3 PF00584 SecE: SecE/Sec61-gamm 68.2 9.3 0.0002 22.5 3.3 29 29-57 18-46 (57)
4 PF14960 ATP_synth_reg: ATP sy 59.6 13 0.00027 22.8 2.7 23 36-58 25-47 (49)
5 PF05084 GRA6: Granule antigen 58.9 13 0.00029 28.5 3.4 31 35-65 148-179 (215)
6 PRK01741 cell division protein 58.4 6.9 0.00015 31.9 1.9 25 38-62 4-30 (332)
7 PF06212 GRIM-19: GRIM-19 prot 55.0 12 0.00027 26.4 2.5 33 23-57 10-50 (130)
8 cd00925 Cyt_c_Oxidase_VIa Cyto 53.8 22 0.00047 23.7 3.4 30 32-61 13-43 (86)
9 PF15284 PAGK: Phage-encoded v 53.7 25 0.00054 22.5 3.5 41 41-83 7-49 (61)
10 PF07423 DUF1510: Protein of u 52.5 13 0.00028 28.4 2.4 20 38-57 17-36 (217)
11 TIGR01167 LPXTG_anchor LPXTG-m 51.9 22 0.00048 18.5 2.6 24 37-60 9-32 (34)
12 PF04854 DUF624: Protein of un 48.5 22 0.00047 21.6 2.6 24 32-55 53-76 (77)
13 PF12273 RCR: Chitin synthesis 48.4 15 0.00032 25.0 1.9 37 40-76 3-39 (130)
14 PF10717 ODV-E18: Occlusion-de 45.5 24 0.00053 23.8 2.6 38 26-63 12-53 (85)
15 PLN02595 cytochrome c oxidase 45.2 42 0.00091 23.3 3.8 11 32-42 41-51 (102)
16 PF09813 Coiled-coil_56: Coile 45.1 26 0.00056 24.3 2.7 21 38-58 50-70 (100)
17 PF05821 NDUF_B8: NADH-ubiquin 44.9 47 0.001 24.6 4.3 37 32-68 118-154 (179)
18 COG3371 Predicted membrane pro 44.8 17 0.00037 27.4 2.0 40 23-63 38-77 (181)
19 PF01299 Lamp: Lysosome-associ 44.6 19 0.0004 27.7 2.2 21 43-63 281-301 (306)
20 PRK07597 secE preprotein trans 42.8 33 0.00072 20.7 2.7 29 29-57 26-54 (64)
21 PF02060 ISK_Channel: Slow vol 41.3 40 0.00086 24.3 3.3 39 41-79 51-90 (129)
22 PRK02898 cobalt transport prot 40.0 37 0.00081 23.4 2.9 23 36-58 3-25 (100)
23 PF07096 DUF1358: Protein of u 39.7 32 0.0007 24.6 2.6 29 38-66 86-117 (124)
24 TIGR01165 cbiN cobalt transpor 39.6 36 0.00079 23.1 2.8 23 36-58 4-26 (91)
25 KOG3208 SNARE protein GS28 [In 38.8 33 0.00072 26.9 2.8 21 36-56 208-228 (231)
26 PHA03049 IMV membrane protein; 38.6 45 0.00098 21.7 3.0 30 40-69 9-38 (68)
27 PF05545 FixQ: Cbb3-type cytoc 37.2 48 0.001 19.0 2.7 22 41-62 15-36 (49)
28 PF02553 CbiN: Cobalt transpor 37.1 35 0.00075 22.3 2.3 22 36-57 1-22 (74)
29 smart00157 PRP Major prion pro 35.3 83 0.0018 24.5 4.4 16 63-78 113-129 (217)
30 PRK09874 drug efflux system pr 34.5 61 0.0013 23.7 3.5 21 30-50 7-27 (408)
31 PRK08386 putative monovalent c 34.1 52 0.0011 23.5 3.0 27 37-63 124-150 (151)
32 PF06024 DUF912: Nucleopolyhed 33.5 31 0.00067 22.9 1.7 10 55-64 85-94 (101)
33 TIGR02205 septum_zipA cell div 32.3 38 0.00082 26.8 2.2 26 38-63 3-30 (284)
34 PF02439 Adeno_E3_CR2: Adenovi 31.5 78 0.0017 18.5 2.9 19 46-64 18-36 (38)
35 PF07172 GRP: Glycine rich pro 31.4 57 0.0012 21.7 2.7 22 38-59 4-26 (95)
36 PF01102 Glycophorin_A: Glycop 31.4 43 0.00093 23.5 2.2 35 39-73 67-104 (122)
37 KOG2725 Cytochrome oxidase ass 30.8 21 0.00045 30.0 0.6 22 63-84 294-320 (411)
38 PRK13855 type IV secretion sys 29.4 69 0.0015 26.6 3.4 31 38-68 32-63 (376)
39 PF01534 Frizzled: Frizzled/Sm 29.2 65 0.0014 25.7 3.1 24 45-71 24-47 (328)
40 PTZ00234 variable surface prot 28.2 57 0.0012 27.2 2.7 26 33-59 361-386 (433)
41 PF05961 Chordopox_A13L: Chord 27.9 94 0.002 20.2 3.1 28 41-68 10-37 (68)
42 PF13124 DUF3963: Protein of u 27.6 99 0.0021 18.2 2.9 22 33-54 17-38 (40)
43 PF02046 COX6A: Cytochrome c o 27.4 67 0.0015 22.3 2.6 28 33-60 43-71 (116)
44 PF15330 SIT: SHP2-interacting 27.1 55 0.0012 22.3 2.1 26 40-65 3-28 (107)
45 PF05393 Hum_adeno_E3A: Human 26.9 90 0.002 21.5 3.1 24 43-66 40-66 (94)
46 COG3086 RseC Positive regulato 26.8 81 0.0018 23.3 3.0 29 40-68 108-136 (150)
47 PF14937 DUF4500: Domain of un 26.7 57 0.0012 22.1 2.1 19 37-55 35-53 (86)
48 PF03988 DUF347: Repeat of Unk 26.5 97 0.0021 18.4 2.9 22 38-59 31-52 (55)
49 COG4292 Predicted membrane pro 26.0 64 0.0014 27.1 2.6 25 43-67 363-387 (387)
50 cd03394 PAP2_like_5 PAP2_like_ 26.0 1.4E+02 0.003 19.0 3.7 17 37-53 2-18 (106)
51 PF12911 OppC_N: N-terminal TM 25.8 90 0.002 17.7 2.6 12 40-51 18-29 (56)
52 PF11297 DUF3098: Protein of u 25.5 1E+02 0.0022 19.9 3.0 28 36-63 5-32 (69)
53 PF06724 DUF1206: Domain of Un 25.4 98 0.0021 18.8 2.8 21 38-58 47-67 (73)
54 PF10828 DUF2570: Protein of u 25.0 76 0.0017 21.1 2.4 17 43-59 10-26 (110)
55 PRK08387 putative monovalent c 24.9 90 0.002 21.9 2.9 26 37-63 105-130 (131)
56 PF02038 ATP1G1_PLM_MAT8: ATP1 23.6 1.1E+02 0.0023 18.8 2.7 24 37-60 15-38 (50)
57 PF15188 CCDC-167: Coiled-coil 23.5 86 0.0019 20.9 2.4 16 39-54 69-84 (85)
58 PLN00038 photosystem I reactio 23.1 1.4E+02 0.003 22.4 3.7 22 40-61 88-109 (165)
59 PF15240 Pro-rich: Proline-ric 23.0 50 0.0011 24.9 1.3 26 43-68 1-26 (179)
60 PF14030 DUF4245: Protein of u 23.0 1E+02 0.0022 22.2 2.9 20 37-56 7-26 (169)
61 COG4327 Predicted membrane pro 22.9 1E+02 0.0022 21.5 2.7 14 33-46 12-25 (101)
62 PF13623 SurA_N_2: SurA N-term 22.4 81 0.0018 22.2 2.3 21 38-58 6-26 (145)
63 PF01040 UbiA: UbiA prenyltran 21.5 1.2E+02 0.0026 21.3 3.0 15 65-79 56-70 (257)
64 PF15347 PAG: Phosphoprotein a 21.3 1.2E+02 0.0027 25.7 3.4 30 39-68 20-50 (428)
65 PF10361 DUF2434: Protein of u 21.2 1.1E+02 0.0023 24.9 3.0 45 32-76 42-89 (296)
66 PRK11546 zraP zinc resistance 20.8 88 0.0019 22.6 2.2 14 36-49 2-15 (143)
67 PF13908 Shisa: Wnt and FGF in 20.7 1.1E+02 0.0023 21.6 2.6 9 16-24 54-62 (179)
68 PF09574 DUF2374: Protein of 20.5 1.1E+02 0.0024 18.3 2.2 16 43-58 25-40 (42)
69 PF10307 DUF2410: Hypothetical 20.4 48 0.001 25.0 0.8 11 25-35 26-36 (197)
70 PRK13592 ubiA prenyltransferas 20.2 1.4E+02 0.003 23.9 3.4 18 62-79 74-91 (299)
71 PRK06281 putative monovalent c 20.2 1.4E+02 0.0031 21.5 3.2 26 38-63 126-151 (154)
72 PF10808 DUF2542: Protein of u 20.1 78 0.0017 21.2 1.7 35 43-77 7-56 (79)
73 PRK05740 secE preprotein trans 20.0 1.2E+02 0.0025 20.0 2.5 29 29-57 52-80 (92)
No 1
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=80.21 E-value=2.2 Score=29.03 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCC---CCC
Q 034746 40 AIAMAGIFLICIPIAMKSAELEQRPHHPV---RPI 71 (85)
Q Consensus 40 ai~~v~i~~~~~~~~~~Sa~~E~R~~~P~---r~i 71 (85)
+|++++|++++++++.++++|-+|-..|. +|+
T Consensus 6 ~iii~~i~l~~~~~~~~~rRR~r~G~~P~~gt~w~ 40 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCHNRRRRRRGLQPIYGTRWM 40 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCceec
Confidence 34455555556666667777776634444 666
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.39 E-value=3.4 Score=27.66 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhhcccccCCC
Q 034746 44 AGIFLICIPIAMKSAELEQRPH 65 (85)
Q Consensus 44 v~i~~~~~~~~~~Sa~~E~R~~ 65 (85)
+.|+++++++..||++...|..
T Consensus 7 llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHhhhhhHHh
Confidence 3344444555556655554443
No 3
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=68.20 E-value=9.3 Score=22.47 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=23.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 034746 29 NCRPKHWKRNTAIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 29 ~~~P~nWk~NTai~~v~i~~~~~~~~~~S 57 (85)
|...+...++|.++++.++.+++.+|.++
T Consensus 18 WP~~~e~~~~t~~Vl~~~~i~~~~~~~vD 46 (57)
T PF00584_consen 18 WPSRKELLKSTIIVLVFVIIFGLFFFLVD 46 (57)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999988888887777654
No 4
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=59.63 E-value=13 Score=22.79 Aligned_cols=23 Identities=17% Similarity=-0.038 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q 034746 36 KRNTAIAMAGIFLICIPIAMKSA 58 (85)
Q Consensus 36 k~NTai~~v~i~~~~~~~~~~Sa 58 (85)
|+|-+++..+..++.+..+++..
T Consensus 25 R~N~~~ATya~i~li~~~~k~~~ 47 (49)
T PF14960_consen 25 RANVAKATYASIGLIILYFKLRR 47 (49)
T ss_pred hhhhHHHHHHHHHHHHHHHhccc
Confidence 78999998888888888887654
No 5
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=58.92 E-value=13 Score=28.46 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHH-HHHHHHhhhcccccCCC
Q 034746 35 WKRNTAIAMAGIFL-ICIPIAMKSAELEQRPH 65 (85)
Q Consensus 35 Wk~NTai~~v~i~~-~~~~~~~~Sa~~E~R~~ 65 (85)
=||..+|..++|++ +++++|+||.++-+|..
T Consensus 148 Q~RHR~IG~~VlA~~VA~L~~~F~RR~~rrsp 179 (215)
T PF05084_consen 148 QKRHRLIGAVVLAVSVAMLTWFFLRRTGRRSP 179 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 35667777766655 56678999988877754
No 6
>PRK01741 cell division protein ZipA; Provisional
Probab=58.40 E-value=6.9 Score=31.91 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHH--hhhccccc
Q 034746 38 NTAIAMAGIFLICIPIA--MKSAELEQ 62 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~--~~Sa~~E~ 62 (85)
||++..+||++|++++. ..|.+||+
T Consensus 4 n~iliILg~lal~~Lv~hgiWsnRrEK 30 (332)
T PRK01741 4 NTILIILGILALVALVAHGIWSNRREK 30 (332)
T ss_pred eehHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 78877777776666554 35777775
No 7
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=54.98 E-value=12 Score=26.41 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=19.7
Q ss_pred cCCCCCCCCCcchhhhH--------HHHHHHHHHHHHHHHhhh
Q 034746 23 SMPGGPNCRPKHWKRNT--------AIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 23 SPaGGW~~~P~nWk~NT--------ai~~v~i~~~~~~~~~~S 57 (85)
.|.||. .|-+||||. ++.++++++.++..+++.
T Consensus 10 PP~GGY--~pv~y~R~~p~rg~sg~~~~~~~~~~~~~G~y~~~ 50 (130)
T PF06212_consen 10 PPPGGY--PPVQYKRNLPKRGPSGWTMFAGGAGIMAYGFYKVG 50 (130)
T ss_pred CCCCCC--CCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 477887 777888864 333444444555555554
No 8
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=53.78 E-value=22 Score=23.73 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=19.2
Q ss_pred CcchhhhHHHHHH-HHHHHHHHHHhhhcccc
Q 034746 32 PKHWKRNTAIAMA-GIFLICIPIAMKSAELE 61 (85)
Q Consensus 32 P~nWk~NTai~~v-~i~~~~~~~~~~Sa~~E 61 (85)
-+-||+-|.++.+ +|+++++-+|++..+.|
T Consensus 13 ~~~WkkiS~~va~P~v~l~~~n~y~~~~eh~ 43 (86)
T cd00925 13 SELWKKISFYVALPAVALCMLNAYLKHKEHE 43 (86)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhhccc
Confidence 3569998887654 55555666666665543
No 9
>PF15284 PAGK: Phage-encoded virulence factor
Probab=53.72 E-value=25 Score=22.46 Aligned_cols=41 Identities=24% Similarity=0.462 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhcc-cccCC-CCCCCCCCcchhhhhcCCC
Q 034746 41 IAMAGIFLICIPIAMKSAE-LEQRP-HHPVRPIPSQLWCKNFGTK 83 (85)
Q Consensus 41 i~~v~i~~~~~~~~~~Sa~-~E~R~-~~P~r~iPS~~W~k~~~e~ 83 (85)
|+++-++++.+.+|.-|+- .|.-+ +.|+.-+|+ ||+.+..+
T Consensus 7 ifL~l~~~LsA~~FSasamAa~~~~~~~~~~~~P~--wC~lwP~g 49 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMAADSSPHRKPANIKPV--WCDLWPAG 49 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhCCCCCCcCCCCh--HHhcCCCC
Confidence 4555555666666665542 22222 233455688 99977543
No 10
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=52.55 E-value=13 Score=28.40 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 034746 38 NTAIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~S 57 (85)
|.+|+.|.|++|.+..++|+
T Consensus 17 NiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHHhhhhee
Confidence 77888877776666666665
No 11
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=51.90 E-value=22 Score=18.51 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccc
Q 034746 37 RNTAIAMAGIFLICIPIAMKSAEL 60 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~~~~Sa~~ 60 (85)
.|..+..+++++++...+.+..++
T Consensus 9 ~~~~~~~~G~~l~~~~~~~~~~rk 32 (34)
T TIGR01167 9 GNSLLLLLGLLLLGLGGLLLRKRK 32 (34)
T ss_pred ccHHHHHHHHHHHHHHHHHheecc
Confidence 344555555555555555544443
No 12
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=48.46 E-value=22 Score=21.60 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=17.3
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHh
Q 034746 32 PKHWKRNTAIAMAGIFLICIPIAM 55 (85)
Q Consensus 32 P~nWk~NTai~~v~i~~~~~~~~~ 55 (85)
-+|||+++.+....++++++..++
T Consensus 53 k~nf~~~~~~~~~~~~~~~il~~d 76 (77)
T PF04854_consen 53 KQNFKQSLLLGLILLLLLAILYVD 76 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888877777766666554
No 13
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=48.44 E-value=15 Score=24.97 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcchh
Q 034746 40 AIAMAGIFLICIPIAMKSAELEQRPHHPVRPIPSQLW 76 (85)
Q Consensus 40 ai~~v~i~~~~~~~~~~Sa~~E~R~~~P~r~iPS~~W 76 (85)
+|+++.|++++++++.+.-.+-+|-..-.+.+.-..|
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P~~gt~w 39 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRRGLQPIYGTRW 39 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCcee
Confidence 3566777777777778888888887775566655444
No 14
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=45.53 E-value=24 Score=23.84 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=23.1
Q ss_pred CCCCCC-CcchhhhHH---HHHHHHHHHHHHHHhhhcccccC
Q 034746 26 GGPNCR-PKHWKRNTA---IAMAGIFLICIPIAMKSAELEQR 63 (85)
Q Consensus 26 GGW~~~-P~nWk~NTa---i~~v~i~~~~~~~~~~Sa~~E~R 63 (85)
+|...+ +..-.-||. ++.++|..+.+++|.-|+...--
T Consensus 12 ~~~~~~~~~~l~pn~lMtILivLVIIiLlImlfqsSS~~~~s 53 (85)
T PF10717_consen 12 DGFVNNNLNGLNPNTLMTILIVLVIIILLIMLFQSSSNGNSS 53 (85)
T ss_pred CccccccccccChhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 444333 666666754 45566666777888887765443
No 15
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=45.16 E-value=42 Score=23.31 Aligned_cols=11 Identities=18% Similarity=0.589 Sum_probs=8.1
Q ss_pred CcchhhhHHHH
Q 034746 32 PKHWKRNTAIA 42 (85)
Q Consensus 32 P~nWk~NTai~ 42 (85)
-+-||.-|.++
T Consensus 41 a~~WkklS~~~ 51 (102)
T PLN02595 41 AAKWEKITYLG 51 (102)
T ss_pred hhhhhhhhHHH
Confidence 35799988863
No 16
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=45.13 E-value=26 Score=24.30 Aligned_cols=21 Identities=5% Similarity=-0.039 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q 034746 38 NTAIAMAGIFLICIPIAMKSA 58 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~Sa 58 (85)
+-++.+++|+++++.||-||-
T Consensus 50 rN~~Tgl~L~~~v~gIY~YTi 70 (100)
T PF09813_consen 50 RNLLTGLALGAFVVGIYAYTI 70 (100)
T ss_pred hhHHHHHHHHHHHHHHHhhee
Confidence 445666777778888887763
No 17
>PF05821 NDUF_B8: NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8); InterPro: IPR008699 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase (complex I) is an extremely complicated multiprotein complex located in the inner mitochondrial membrane. Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. Human complex I appears to consist of 41 subunits [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=44.86 E-value=47 Score=24.63 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=19.3
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 034746 32 PKHWKRNTAIAMAGIFLICIPIAMKSAELEQRPHHPV 68 (85)
Q Consensus 32 P~nWk~NTai~~v~i~~~~~~~~~~Sa~~E~R~~~P~ 68 (85)
+..|+.+....++.+++++++.+....-...||.+|.
T Consensus 118 ~~~w~~~~~~l~~flg~~~~~~~~~~~~~~~~P~~pK 154 (179)
T PF05821_consen 118 PVSWQSMLKQLFGFLGFMLFMFYLGEMYPPYRPVMPK 154 (179)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc
Confidence 5567766554444444443333433344455777776
No 18
>COG3371 Predicted membrane protein [Function unknown]
Probab=44.78 E-value=17 Score=27.38 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=31.8
Q ss_pred cCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccccC
Q 034746 23 SMPGGPNCRPKHWKRNTAIAMAGIFLICIPIAMKSAELEQR 63 (85)
Q Consensus 23 SPaGGW~~~P~nWk~NTai~~v~i~~~~~~~~~~Sa~~E~R 63 (85)
|--|+ =..|.||=-||.+...+++++.+.++.+..+.|..
T Consensus 38 SDLG~-~~~p~~~ifN~glIl~Gll~i~~s~~l~r~k~~~~ 77 (181)
T COG3371 38 SDLGS-LVAPYGWIFNTGLILLGLLVILFSILLIRNKIENY 77 (181)
T ss_pred hhhcc-cCCCcceEEechHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45565 33499999999999999999999999888755544
No 19
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=44.65 E-value=19 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhcccccC
Q 034746 43 MAGIFLICIPIAMKSAELEQR 63 (85)
Q Consensus 43 ~v~i~~~~~~~~~~Sa~~E~R 63 (85)
+++|++|..++|.|.++|-++
T Consensus 281 La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 281 LAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHHhheeEeccccc
Confidence 455555666678888777655
No 20
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=42.83 E-value=33 Score=20.74 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=21.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 034746 29 NCRPKHWKRNTAIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 29 ~~~P~nWk~NTai~~v~i~~~~~~~~~~S 57 (85)
|...+--.++|.++++.++++++.+|.++
T Consensus 26 WPs~~e~~~~t~~Vi~~~~~~~~~i~~vD 54 (64)
T PRK07597 26 WPTRKELVRSTIVVLVFVAFFALFFYLVD 54 (64)
T ss_pred CcCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44556667888888888877777777654
No 21
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=41.29 E-value=40 Score=24.35 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHH-HhhhcccccCCCCCCCCCCcchhhhh
Q 034746 41 IAMAGIFLICIPI-AMKSAELEQRPHHPVRPIPSQLWCKN 79 (85)
Q Consensus 41 i~~v~i~~~~~~~-~~~Sa~~E~R~~~P~r~iPS~~W~k~ 79 (85)
+.+.+++++.+++ +.-|.++|.+.-+=+.+|-+.-|.+.
T Consensus 51 mgfFgff~~gImlsyvRSKK~E~s~DPyh~YIe~d~W~eK 90 (129)
T PF02060_consen 51 MGFFGFFTVGIMLSYVRSKKREHSHDPYHQYIEEDDWQEK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TTTTTS-TTT--S-
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccChHHHHhHHHHHHHH
Confidence 3344444444443 55688889888777788888888654
No 22
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=39.95 E-value=37 Score=23.39 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q 034746 36 KRNTAIAMAGIFLICIPIAMKSA 58 (85)
Q Consensus 36 k~NTai~~v~i~~~~~~~~~~Sa 58 (85)
+.|..+.+++|+++.++++.++.
T Consensus 3 ~~~~~L~~~vi~l~~~pl~~~~~ 25 (100)
T PRK02898 3 KKNLLLLLLVILLAVLPLFIYSG 25 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcC
Confidence 56888888888888899988774
No 23
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=39.72 E-value=32 Score=24.57 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhc---ccccCCCC
Q 034746 38 NTAIAMAGIFLICIPIAMKSA---ELEQRPHH 66 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~Sa---~~E~R~~~ 66 (85)
-|+++..++.++|+.+|+++- -.|.|.++
T Consensus 86 GTlyA~~GvG~l~~~iwK~~Gv~~~~eFr~km 117 (124)
T PF07096_consen 86 GTLYAVCGVGVLVFGIWKLSGVKNLKEFREKM 117 (124)
T ss_pred HHHHHHHhHHHHHHHHHHHhccCcHHHHHHHH
Confidence 588999999999999999864 34555543
No 24
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=39.57 E-value=36 Score=23.15 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q 034746 36 KRNTAIAMAGIFLICIPIAMKSA 58 (85)
Q Consensus 36 k~NTai~~v~i~~~~~~~~~~Sa 58 (85)
|+|..+.+++++++.++++.++.
T Consensus 4 ~~~~~ll~~v~~l~~~pl~~~~~ 26 (91)
T TIGR01165 4 KKTIWLLAAVAALVVLPLLIYAG 26 (91)
T ss_pred chhHHHHHHHHHHHHHHHHhccC
Confidence 67888888888888888888774
No 25
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.78 E-value=33 Score=26.87 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 034746 36 KRNTAIAMAGIFLICIPIAMK 56 (85)
Q Consensus 36 k~NTai~~v~i~~~~~~~~~~ 56 (85)
++||.|.+++|+++++.++.|
T Consensus 208 rrdslILa~Vis~C~llllfy 228 (231)
T KOG3208|consen 208 RRDSLILAAVISVCTLLLLFY 228 (231)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 578988888887777666543
No 26
>PHA03049 IMV membrane protein; Provisional
Probab=38.59 E-value=45 Score=21.72 Aligned_cols=30 Identities=27% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 034746 40 AIAMAGIFLICIPIAMKSAELEQRPHHPVR 69 (85)
Q Consensus 40 ai~~v~i~~~~~~~~~~Sa~~E~R~~~P~r 69 (85)
+|+.+.|+++.+.+++--+...+.+..|++
T Consensus 9 iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ 38 (68)
T PHA03049 9 IICVVIIGLIVYGIYNKKTTTSQNPPSQEK 38 (68)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCChhh
Confidence 355566677777777766665555554443
No 27
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=37.22 E-value=48 Score=19.03 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhccccc
Q 034746 41 IAMAGIFLICIPIAMKSAELEQ 62 (85)
Q Consensus 41 i~~v~i~~~~~~~~~~Sa~~E~ 62 (85)
+.++.++.+.+.+|-++.++..
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHcccchh
Confidence 3444555556677777776643
No 28
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=37.07 E-value=35 Score=22.28 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 034746 36 KRNTAIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 36 k~NTai~~v~i~~~~~~~~~~S 57 (85)
++|..+.+++++++.++++.++
T Consensus 1 ~kn~~l~~~vv~l~~~pl~~~~ 22 (74)
T PF02553_consen 1 MKNLLLLLLVVALAVVPLFLYP 22 (74)
T ss_pred CceeHHHHHHHHHHHHHHHHhc
Confidence 4678888887887878887743
No 29
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=35.29 E-value=83 Score=24.47 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=6.5
Q ss_pred CCCCCC-CCCCcchhhh
Q 034746 63 RPHHPV-RPIPSQLWCK 78 (85)
Q Consensus 63 R~~~P~-r~iPS~~W~k 78 (85)
|+++.. .....|+|+.
T Consensus 113 rp~~~F~np~EeryYne 129 (217)
T smart00157 113 RPLIHFGNDYEDRYYRE 129 (217)
T ss_pred CCccccCChHHHHHHHH
Confidence 444433 2334444444
No 30
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=34.52 E-value=61 Score=23.74 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=15.7
Q ss_pred CCCcchhhhHHHHHHHHHHHH
Q 034746 30 CRPKHWKRNTAIAMAGIFLIC 50 (85)
Q Consensus 30 ~~P~nWk~NTai~~v~i~~~~ 50 (85)
++|.||++|..+..++.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (408)
T PRK09874 7 DTPINWKRNLTVAWLGCFLTG 27 (408)
T ss_pred CCCCcHHHHHHHHHHHHHHHH
Confidence 678999999888866654443
No 31
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=34.05 E-value=52 Score=23.52 Aligned_cols=27 Identities=11% Similarity=-0.091 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccccC
Q 034746 37 RNTAIAMAGIFLICIPIAMKSAELEQR 63 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~~~~Sa~~E~R 63 (85)
-|..|.+.+++++..+++.++.++|.+
T Consensus 124 ~~igV~l~V~g~~~~i~~~~~~~~~~~ 150 (151)
T PRK08386 124 MNLAVGLKVFGGLVSAIFAMALFRRWK 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 378899999999999999999776654
No 32
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=33.49 E-value=31 Score=22.91 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=4.5
Q ss_pred hhhcccccCC
Q 034746 55 MKSAELEQRP 64 (85)
Q Consensus 55 ~~Sa~~E~R~ 64 (85)
.+++++++..
T Consensus 85 VILRer~~~~ 94 (101)
T PF06024_consen 85 VILRERQKSI 94 (101)
T ss_pred EEEecccccc
Confidence 3454444443
No 33
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=32.29 E-value=38 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHhh--hcccccC
Q 034746 38 NTAIAMAGIFLICIPIAMK--SAELEQR 63 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~--Sa~~E~R 63 (85)
|+.+..||+++|+++++.- +.++|+.
T Consensus 3 r~iLIIvGaiaI~aLl~hGlwt~Rke~s 30 (284)
T TIGR02205 3 RIILIIVGILAIAALLFHGLWTSRKEKS 30 (284)
T ss_pred eehHHHHHHHHHHHHHHccccccccccc
Confidence 5677888888887777543 5566654
No 34
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.52 E-value=78 Score=18.45 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhcccccCC
Q 034746 46 IFLICIPIAMKSAELEQRP 64 (85)
Q Consensus 46 i~~~~~~~~~~Sa~~E~R~ 64 (85)
+..+|+..+-.--++.+|.
T Consensus 18 iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 18 IIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHcccccc
Confidence 3344444443444444433
No 35
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.42 E-value=57 Score=21.75 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHH-hhhcc
Q 034746 38 NTAIAMAGIFLICIPIA-MKSAE 59 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~-~~Sa~ 59 (85)
.++|.++.+++++.+|. -.||+
T Consensus 4 K~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhH
Confidence 44555555544444444 45553
No 36
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.40 E-value=43 Score=23.51 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH---hhhcccccCCCCCCCCCCc
Q 034746 39 TAIAMAGIFLICIPIA---MKSAELEQRPHHPVRPIPS 73 (85)
Q Consensus 39 Tai~~v~i~~~~~~~~---~~Sa~~E~R~~~P~r~iPS 73 (85)
+.|++.+|+++...|. .+-.++-+|...+...-|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p~P~ 104 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQPLPE 104 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS------------
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 4444444444333332 3333444444333344443
No 37
>KOG2725 consensus Cytochrome oxidase assembly factor COX15 [Posttranslational modification, protein turnover, chaperones]
Probab=30.77 E-value=21 Score=29.99 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCCCCCCCCcchhh-----hhcCCCC
Q 034746 63 RPHHPVRPIPSQLWC-----KNFGTKD 84 (85)
Q Consensus 63 R~~~P~r~iPS~~W~-----k~~~e~~ 84 (85)
-|+|-++|||.++|| |||-||+
T Consensus 294 fPKMGe~wipd~~f~r~piwrN~~ENp 320 (411)
T KOG2725|consen 294 FPKMGESWIPDDMFTRSPIWRNFFENP 320 (411)
T ss_pred ccccccccCccccccccHHHHHhhcCC
Confidence 477888999999887 5666663
No 38
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=29.42 E-value=69 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhc-ccccCCCCCC
Q 034746 38 NTAIAMAGIFLICIPIAMKSA-ELEQRPHHPV 68 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~Sa-~~E~R~~~P~ 68 (85)
.-+|++++++++++.+|..+. +.+.-+..|+
T Consensus 32 ~~~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 63 (376)
T PRK13855 32 KLIVAGLVLALSLSLIWLGGRSKKENEPAPPS 63 (376)
T ss_pred hhhHHHHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 357888888889999999884 4445455555
No 39
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=29.20 E-value=65 Score=25.65 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCC
Q 034746 45 GIFLICIPIAMKSAELEQRPHHPVRPI 71 (85)
Q Consensus 45 ~i~~~~~~~~~~Sa~~E~R~~~P~r~i 71 (85)
...+.+..+|.+..+ |-++|||+|
T Consensus 24 ~~t~ftv~Tf~id~~---rf~yPerpi 47 (328)
T PF01534_consen 24 ISTLFTVLTFLIDRS---RFRYPERPI 47 (328)
T ss_pred HHHHHHHHHHHhccc---ccCCccchh
Confidence 334445667777544 899999887
No 40
>PTZ00234 variable surface protein Vir12; Provisional
Probab=28.19 E-value=57 Score=27.24 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=16.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhcc
Q 034746 33 KHWKRNTAIAMAGIFLICIPIAMKSAE 59 (85)
Q Consensus 33 ~nWk~NTai~~v~i~~~~~~~~~~Sa~ 59 (85)
.|.-||- |++|+|+++.+.+|.|-..
T Consensus 361 Sn~~rni-im~~ailGtifFlfyyn~s 386 (433)
T PTZ00234 361 SEYFRHS-IVGASIIGVLVFLFFFFKS 386 (433)
T ss_pred hHHHHHH-HHHHHHHHHHHHhhhhhcc
Confidence 4666775 5556666666777766433
No 41
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=27.92 E-value=94 Score=20.24 Aligned_cols=28 Identities=21% Similarity=0.071 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCC
Q 034746 41 IAMAGIFLICIPIAMKSAELEQRPHHPV 68 (85)
Q Consensus 41 i~~v~i~~~~~~~~~~Sa~~E~R~~~P~ 68 (85)
|+.++|+++.+.+++--+..-+.++.++
T Consensus 10 ICVaii~lIlY~iYnr~~~~q~~~~~~e 37 (68)
T PF05961_consen 10 ICVAIIGLILYGIYNRKKTTQNTNPSTE 37 (68)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCchh
Confidence 4445555566666665555544544433
No 42
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=27.62 E-value=99 Score=18.19 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=17.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 034746 33 KHWKRNTAIAMAGIFLICIPIA 54 (85)
Q Consensus 33 ~nWk~NTai~~v~i~~~~~~~~ 54 (85)
..|-||-...++.++++.+.+|
T Consensus 17 qkwirnit~cfal~vv~lvslw 38 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVLVSLW 38 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5689998888877777776666
No 43
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=27.42 E-value=67 Score=22.27 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=16.8
Q ss_pred cchhhhHHH-HHHHHHHHHHHHHhhhccc
Q 034746 33 KHWKRNTAI-AMAGIFLICIPIAMKSAEL 60 (85)
Q Consensus 33 ~nWk~NTai-~~v~i~~~~~~~~~~Sa~~ 60 (85)
+-||.=|.. ++-+|+++++-++.+..+.
T Consensus 43 ~~Wk~iS~~v~iP~i~l~~~n~~~l~~~H 71 (116)
T PF02046_consen 43 KLWKKISFFVAIPAIALCMLNAYYLEKEH 71 (116)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHH-HSTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 458887774 4556666666677666444
No 44
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=27.08 E-value=55 Score=22.32 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCC
Q 034746 40 AIAMAGIFLICIPIAMKSAELEQRPH 65 (85)
Q Consensus 40 ai~~v~i~~~~~~~~~~Sa~~E~R~~ 65 (85)
++++++++++..+++++++=++.|-.
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq 28 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQ 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667777777888888876665543
No 45
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.92 E-value=90 Score=21.47 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhh---hcccccCCCC
Q 034746 43 MAGIFLICIPIAMK---SAELEQRPHH 66 (85)
Q Consensus 43 ~v~i~~~~~~~~~~---Sa~~E~R~~~ 66 (85)
..+|+++.+..|.+ -+++.+||++
T Consensus 40 I~~iFil~VilwfvCC~kRkrsRrPIY 66 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCKKRKRSRRPIY 66 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 34444444444444 4555555553
No 46
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.80 E-value=81 Score=23.28 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 034746 40 AIAMAGIFLICIPIAMKSAELEQRPHHPV 68 (85)
Q Consensus 40 ai~~v~i~~~~~~~~~~Sa~~E~R~~~P~ 68 (85)
..++.+.++-...+..||++.+.|+..+.
T Consensus 108 ~~~~lg~~l~fl~~r~ysRkl~~~~~~Qp 136 (150)
T COG3086 108 FGAFLGLALGFLLARRYSRKLAKRTEWQP 136 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 34455566666788899999999998554
No 47
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=26.71 E-value=57 Score=22.06 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 034746 37 RNTAIAMAGIFLICIPIAM 55 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~~~ 55 (85)
-|..|+++|+++++.++..
T Consensus 35 PNk~iM~~Gl~a~~~c~gY 53 (86)
T PF14937_consen 35 PNKPIMAFGLIAITLCVGY 53 (86)
T ss_pred CCchhhHHHHHHHHHHHHH
Confidence 3777888777776655543
No 48
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=26.52 E-value=97 Score=18.43 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc
Q 034746 38 NTAIAMAGIFLICIPIAMKSAE 59 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~Sa~ 59 (85)
.+++.++++++++..++..+.+
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~ 52 (55)
T PF03988_consen 31 ISTLIFAALLAVVLALWYRSKR 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777643
No 49
>COG4292 Predicted membrane protein [Function unknown]
Probab=26.00 E-value=64 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCC
Q 034746 43 MAGIFLICIPIAMKSAELEQRPHHP 67 (85)
Q Consensus 43 ~v~i~~~~~~~~~~Sa~~E~R~~~P 67 (85)
.+.++.+|+++|.+++.+++|+..|
T Consensus 363 ~~tv~~l~i~~~~~~~~~~~~~~a~ 387 (387)
T COG4292 363 LVTVALLGIALWEYKALKLERRTAP 387 (387)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccCC
Confidence 3566778999999999999998765
No 50
>cd03394 PAP2_like_5 PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=25.96 E-value=1.4e+02 Score=19.05 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 034746 37 RNTAIAMAGIFLICIPI 53 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~ 53 (85)
++|++.++..+++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (106)
T cd03394 2 REGLLILAEAAALTAAV 18 (106)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45555554444433333
No 51
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=25.78 E-value=90 Score=17.69 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 034746 40 AIAMAGIFLICI 51 (85)
Q Consensus 40 ai~~v~i~~~~~ 51 (85)
+++++.|+++.+
T Consensus 18 a~~gl~il~~~v 29 (56)
T PF12911_consen 18 AVIGLIILLILV 29 (56)
T ss_pred HHHHHHHHHHHH
Confidence 344443333333
No 52
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=25.51 E-value=1e+02 Score=19.92 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccC
Q 034746 36 KRNTAIAMAGIFLICIPIAMKSAELEQR 63 (85)
Q Consensus 36 k~NTai~~v~i~~~~~~~~~~Sa~~E~R 63 (85)
|.|-.+.++|++++++.-...|-+.+.-
T Consensus 5 k~Nyill~iG~~vIilGfilMsg~~s~d 32 (69)
T PF11297_consen 5 KKNYILLAIGIAVIILGFILMSGGGSDD 32 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHheeCCCCCC
Confidence 6899999999999999888888776654
No 53
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=25.41 E-value=98 Score=18.78 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q 034746 38 NTAIAMAGIFLICIPIAMKSA 58 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~Sa 58 (85)
.+++..++++++++.+|.+-.
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999887653
No 54
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.99 E-value=76 Score=21.12 Aligned_cols=17 Identities=6% Similarity=-0.195 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 034746 43 MAGIFLICIPIAMKSAE 59 (85)
Q Consensus 43 ~v~i~~~~~~~~~~Sa~ 59 (85)
++.++++++.+|..|..
T Consensus 10 ~~lvl~L~~~l~~qs~~ 26 (110)
T PF10828_consen 10 AVLVLGLGGWLWYQSQR 26 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33466667777766644
No 55
>PRK08387 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.94 E-value=90 Score=21.86 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccccC
Q 034746 37 RNTAIAMAGIFLICIPIAMKSAELEQR 63 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~~~~Sa~~E~R 63 (85)
-|.+|.+.+.+.+..+.+.++ ++|.|
T Consensus 105 ~ni~V~l~V~~~~~~i~~~l~-~~~~~ 130 (131)
T PRK08387 105 FNIGVGLKVGAAFVLVFYILI-RWVER 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhc
Confidence 377788888888878888887 44444
No 56
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.56 E-value=1.1e+02 Score=18.80 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccc
Q 034746 37 RNTAIAMAGIFLICIPIAMKSAEL 60 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~~~~Sa~~ 60 (85)
|+..+.+++|+.++.++..+|.+-
T Consensus 15 rigGLi~A~vlfi~Gi~iils~kc 38 (50)
T PF02038_consen 15 RIGGLIFAGVLFILGILIILSGKC 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hccchHHHHHHHHHHHHHHHcCcc
Confidence 455666777777777777777543
No 57
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.50 E-value=86 Score=20.89 Aligned_cols=16 Identities=13% Similarity=0.575 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 034746 39 TAIAMAGIFLICIPIA 54 (85)
Q Consensus 39 Tai~~v~i~~~~~~~~ 54 (85)
+....++|+++|+.+|
T Consensus 69 ~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 69 SMLLSVALFFVCFLVY 84 (85)
T ss_pred hHHHHHHHHHHHHHHc
Confidence 3444566677777665
No 58
>PLN00038 photosystem I reaction center subunit XI (PsaL); Provisional
Probab=23.06 E-value=1.4e+02 Score=22.44 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccc
Q 034746 40 AIAMAGIFLICIPIAMKSAELE 61 (85)
Q Consensus 40 ai~~v~i~~~~~~~~~~Sa~~E 61 (85)
+|++|.|+.+|..++-.....|
T Consensus 88 aiglv~IlT~~Ls~Yg~~~f~~ 109 (165)
T PLN00038 88 AAGLVLILTLCLTIYGAASFQE 109 (165)
T ss_pred HHHHHHHHHHHHHHhcccccCC
Confidence 4566666666766666655555
No 59
>PF15240 Pro-rich: Proline-rich
Probab=23.00 E-value=50 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCC
Q 034746 43 MAGIFLICIPIAMKSAELEQRPHHPV 68 (85)
Q Consensus 43 ~v~i~~~~~~~~~~Sa~~E~R~~~P~ 68 (85)
|++|+++++++++=||.+-.....-+
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv~~e 26 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDVSQE 26 (179)
T ss_pred ChhHHHHHHHHHhhhccccccccccc
Confidence 45677777888888887766655444
No 60
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=22.99 E-value=1e+02 Score=22.16 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 034746 37 RNTAIAMAGIFLICIPIAMK 56 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~~~~ 56 (85)
||-++.++.|+++|++++.+
T Consensus 7 rdMilSL~vl~~~~~~i~~~ 26 (169)
T PF14030_consen 7 RDMILSLAVLVAIVALIVAG 26 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67888899999888888433
No 61
>COG4327 Predicted membrane protein [Function unknown]
Probab=22.88 E-value=1e+02 Score=21.46 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=9.5
Q ss_pred cchhhhHHHHHHHH
Q 034746 33 KHWKRNTAIAMAGI 46 (85)
Q Consensus 33 ~nWk~NTai~~v~i 46 (85)
.-||+||.++...+
T Consensus 12 aywranttli~~lL 25 (101)
T COG4327 12 AYWRANTTLIAALL 25 (101)
T ss_pred HHHHhhhHHHHHHH
Confidence 35999998765433
No 62
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=22.43 E-value=81 Score=22.24 Aligned_cols=21 Identities=0% Similarity=-0.115 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q 034746 38 NTAIAMAGIFLICIPIAMKSA 58 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~Sa 58 (85)
+....+++|.+++..+|.+|.
T Consensus 6 ~r~~lLi~vIglAL~aFIv~d 26 (145)
T PF13623_consen 6 QRGGLLIIVIGLALFAFIVGD 26 (145)
T ss_pred hcchHHHHHHHHHHHHHHHHH
Confidence 344556667777777777753
No 63
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=21.48 E-value=1.2e+02 Score=21.26 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.0
Q ss_pred CCCCCCCCcchhhhh
Q 034746 65 HHPVRPIPSQLWCKN 79 (85)
Q Consensus 65 ~~P~r~iPS~~W~k~ 79 (85)
..|+|++|++..++.
T Consensus 56 ~~~~rPl~~g~i~~~ 70 (257)
T PF01040_consen 56 NKPNRPLPSGRISPR 70 (257)
T ss_pred cccCcchhHHHHhHH
Confidence 678899999888753
No 64
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=21.28 E-value=1.2e+02 Score=25.72 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhh-cccccCCCCCC
Q 034746 39 TAIAMAGIFLICIPIAMKS-AELEQRPHHPV 68 (85)
Q Consensus 39 Tai~~v~i~~~~~~~~~~S-a~~E~R~~~P~ 68 (85)
++.++..+++|.++||+-| -++|++++++.
T Consensus 20 sLaav~~f~lis~LifLCsSC~reKK~~~~~ 50 (428)
T PF15347_consen 20 SLAAVTTFLLISFLIFLCSSCDREKKPKQQS 50 (428)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCCC
Confidence 3444555666777778765 47888887554
No 65
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=21.22 E-value=1.1e+02 Score=24.86 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=33.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhhhcccccCCCCCC--CCCCc-chh
Q 034746 32 PKHWKRNTAIAMAGIFLICIPIAMKSAELEQRPHHPV--RPIPS-QLW 76 (85)
Q Consensus 32 P~nWk~NTai~~v~i~~~~~~~~~~Sa~~E~R~~~P~--r~iPS-~~W 76 (85)
|-.=|.-+.|++++++++++++-.+--+++=|-..|. |+.|- |.|
T Consensus 42 ~ig~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRw 89 (296)
T PF10361_consen 42 PIGTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRW 89 (296)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhH
Confidence 4455677889999999988888888878887777776 77754 444
No 66
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.79 E-value=88 Score=22.60 Aligned_cols=14 Identities=50% Similarity=0.503 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHH
Q 034746 36 KRNTAIAMAGIFLI 49 (85)
Q Consensus 36 k~NTai~~v~i~~~ 49 (85)
|+||-++++.|++.
T Consensus 2 ~~~~~~~~~~~ala 15 (143)
T PRK11546 2 KRNTKIALVLMALS 15 (143)
T ss_pred CcchhHHHHHHHHH
Confidence 57777666544333
No 67
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.67 E-value=1.1e+02 Score=21.61 Aligned_cols=9 Identities=11% Similarity=0.645 Sum_probs=5.8
Q ss_pred CCCCceecC
Q 034746 16 DFRAKVWSM 24 (85)
Q Consensus 16 pYPk~VWSP 24 (85)
-|...+|.+
T Consensus 54 ~~~~~~~~~ 62 (179)
T PF13908_consen 54 NYDTPDWTP 62 (179)
T ss_pred ccccccccc
Confidence 355667776
No 68
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=20.50 E-value=1.1e+02 Score=18.26 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhhc
Q 034746 43 MAGIFLICIPIAMKSA 58 (85)
Q Consensus 43 ~v~i~~~~~~~~~~Sa 58 (85)
+++++++|+.+-+++.
T Consensus 25 F~~Vav~~~~lL~~~~ 40 (42)
T PF09574_consen 25 FAAVAVASIWLLSLTK 40 (42)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3444444444444443
No 69
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=20.39 E-value=48 Score=24.99 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=8.7
Q ss_pred CCCCCCCCcch
Q 034746 25 PGGPNCRPKHW 35 (85)
Q Consensus 25 aGGW~~~P~nW 35 (85)
.||||.+|.-+
T Consensus 26 ngGWW~d~~~L 36 (197)
T PF10307_consen 26 NGGWWHDPRIL 36 (197)
T ss_pred CCCCcCCcHHH
Confidence 59999998643
No 70
>PRK13592 ubiA prenyltransferase; Provisional
Probab=20.23 E-value=1.4e+02 Score=23.94 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=13.9
Q ss_pred cCCCCCCCCCCcchhhhh
Q 034746 62 QRPHHPVRPIPSQLWCKN 79 (85)
Q Consensus 62 ~R~~~P~r~iPS~~W~k~ 79 (85)
.|-..|+|++||-.-|++
T Consensus 74 DrIN~P~RPLPsG~VS~~ 91 (299)
T PRK13592 74 DRRLFPHRALPSGRVKKK 91 (299)
T ss_pred hhhcCCCCCCCcCCCCHH
Confidence 366689999999877654
No 71
>PRK06281 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=20.21 E-value=1.4e+02 Score=21.55 Aligned_cols=26 Identities=4% Similarity=-0.043 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccC
Q 034746 38 NTAIAMAGIFLICIPIAMKSAELEQR 63 (85)
Q Consensus 38 NTai~~v~i~~~~~~~~~~Sa~~E~R 63 (85)
|.+|.+.+.++++.+++.++.+++.+
T Consensus 126 nigVgl~V~~~~~~I~~~f~~~~~~~ 151 (154)
T PRK06281 126 NIVVGLKVFVGLSAIVIAFMEFKKEE 151 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 88899988888888888888665544
No 72
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=20.11 E-value=78 Score=21.16 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhh--------cccccCCC---CCC---CCC-Ccchhh
Q 034746 43 MAGIFLICIPIAMKS--------AELEQRPH---HPV---RPI-PSQLWC 77 (85)
Q Consensus 43 ~v~i~~~~~~~~~~S--------a~~E~R~~---~P~---r~i-PS~~W~ 77 (85)
+++|+++.+++|-+- -..|++-+ .|. |.- |+|+||
T Consensus 7 Fvv~~~lmi~~f~fREa~KgwRsGaVdK~vkna~ePvyi~R~~~P~~yws 56 (79)
T PF10808_consen 7 FVVIAFLMIPLFCFREAWKGWRSGAVDKIVKNAQEPVYIYRAKNPGQYWS 56 (79)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhcchHHHhcCCCCcEEEEecCCcchhHH
Confidence 566777778877653 22333322 233 444 999997
No 73
>PRK05740 secE preprotein translocase subunit SecE; Reviewed
Probab=20.03 E-value=1.2e+02 Score=19.95 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=20.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 034746 29 NCRPKHWKRNTAIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 29 ~~~P~nWk~NTai~~v~i~~~~~~~~~~S 57 (85)
|...+--.++|.++++.++.+++.+|.++
T Consensus 52 WPtr~e~~~~t~~Viv~~~i~~l~i~~~D 80 (92)
T PRK05740 52 WPTRQETLQTTLIVIAVVIVMALILWGLD 80 (92)
T ss_pred CcCHHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34455566788888888877777777654
Done!