Query 034746
Match_columns 85
No_of_seqs 76 out of 78
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_G Cytochrome C oxidase po 66.6 5.5 0.00019 25.6 3.2 27 33-59 14-41 (85)
2 2y69_G Cytochrome C oxidase po 59.1 8.8 0.0003 25.2 3.2 27 33-59 26-53 (97)
3 2zjs_E Preprotein translocase 52.2 22 0.00074 20.6 3.8 30 29-58 21-50 (60)
4 3vmt_A Monofunctional glycosyl 51.5 10 0.00036 28.6 2.9 53 1-54 1-55 (263)
5 2k21_A Potassium voltage-gated 41.0 24 0.00082 24.7 3.2 40 41-80 60-100 (138)
6 3dl8_C SECE; RECA-type ATPase 34.4 34 0.0012 20.2 2.8 28 30-57 21-48 (65)
7 1f16_A Protein (apoptosis regu 27.5 55 0.0019 22.9 3.3 23 32-55 167-189 (192)
8 3uh0_A Threonyl-tRNA synthetas 27.3 13 0.00045 29.1 0.0 27 1-27 1-27 (460)
9 3din_D Preprotein translocase 26.6 30 0.001 20.4 1.6 26 32-57 23-48 (65)
10 2xdo_A TETX2 protein; tetracyc 24.0 6 0.00021 28.7 -2.3 47 1-57 1-47 (398)
11 2knc_B Integrin beta-3; transm 23.2 68 0.0023 19.8 2.8 13 44-56 22-34 (79)
12 3bo0_B Preprotein translocase 22.7 98 0.0034 17.7 3.3 20 37-56 37-56 (65)
13 2jp3_A FXYD domain-containing 20.5 96 0.0033 19.2 3.0 23 37-59 18-40 (67)
No 1
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=66.59 E-value=5.5 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=15.9
Q ss_pred cchhhhHHH-HHHHHHHHHHHHHhhhcc
Q 034746 33 KHWKRNTAI-AMAGIFLICIPIAMKSAE 59 (85)
Q Consensus 33 ~nWk~NTai-~~v~i~~~~~~~~~~Sa~ 59 (85)
+-||+-|.. ++-+|+++++-+|+...+
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~~~~e 41 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWLHSGH 41 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 569999954 444555555555555444
No 2
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=59.12 E-value=8.8 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=17.0
Q ss_pred cchhhhHH-HHHHHHHHHHHHHHhhhcc
Q 034746 33 KHWKRNTA-IAMAGIFLICIPIAMKSAE 59 (85)
Q Consensus 33 ~nWk~NTa-i~~v~i~~~~~~~~~~Sa~ 59 (85)
+-||+-|. +++-+|+++.+-+|++..+
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~~~~e 53 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWLHSGH 53 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTSCSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56999995 4444555555566656544
No 3
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=52.25 E-value=22 Score=20.63 Aligned_cols=30 Identities=3% Similarity=-0.063 Sum_probs=22.6
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHhhhc
Q 034746 29 NCRPKHWKRNTAIAMAGIFLICIPIAMKSA 58 (85)
Q Consensus 29 ~~~P~nWk~NTai~~v~i~~~~~~~~~~Sa 58 (85)
|...+.-.++|++.++.++++++.+|.++.
T Consensus 21 WPtr~e~~~~t~vViv~v~i~~~~~~~vD~ 50 (60)
T 2zjs_E 21 WPTREQVVEGTQAILLFTLAFMVILGLYDT 50 (60)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788999988888888888776653
No 4
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=51.49 E-value=10 Score=28.61 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCCCCCCCC--CcchhhhHHHHHHHHHHHHHHHH
Q 034746 1 MGGADHGHAGEGAHRDFRAKVWSMPGGPNCR--PKHWKRNTAIAMAGIFLICIPIA 54 (85)
Q Consensus 1 mggg~~~~~~~~~~~pYPk~VWSPaGGW~~~--P~nWk~NTai~~v~i~~~~~~~~ 54 (85)
||-.+|.|+|..+-.| ...-|.|-|.+=-. .+..-+...++++++++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~ 55 (263)
T 3vmt_A 1 MGSSHHHHHHSSGLVP-RGSHMQPVGKPPKKKKSKRILLKILLTILIIIALFIGIM 55 (263)
T ss_dssp -----------------------------------CCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccccCccc-CCCcccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666544333 34457777776432 22222345555555544444433
No 5
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=40.99 E-value=24 Score=24.72 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHH-HHhhhcccccCCCCCCCCCCcchhhhhc
Q 034746 41 IAMAGIFLICIP-IAMKSAELEQRPHHPVRPIPSQLWCKNF 80 (85)
Q Consensus 41 i~~v~i~~~~~~-~~~~Sa~~E~R~~~P~r~iPS~~W~k~~ 80 (85)
+.+.+++++.++ .+.-|.++|.|.-+-..+|-++-|.+..
T Consensus 60 mgffgff~~GImLsYiRSKk~E~s~DPy~~YIe~d~W~ek~ 100 (138)
T 2k21_A 60 LGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKD 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTTTTTSCTTTCCSCC
T ss_pred HHHHHHHHHHHHHHHhHhhhccccCCcHHHHHHHHHHHHhh
Confidence 334444444444 4566899999998888899888887543
No 6
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=34.37 E-value=34 Score=20.16 Aligned_cols=28 Identities=7% Similarity=-0.107 Sum_probs=16.0
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 034746 30 CRPKHWKRNTAIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 30 ~~P~nWk~NTai~~v~i~~~~~~~~~~S 57 (85)
...+.-.++|.+.++.++++++.+|.++
T Consensus 21 Ptr~e~~~~T~vViv~v~i~~~~i~~vD 48 (65)
T 3dl8_C 21 PSRELVVKATISVIIFSLAIGVYLWILD 48 (65)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666788888888777777776654
No 7
>1f16_A Protein (apoptosis regulator BAX, membrane isoform alpha); helical protein; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 2k7w_A
Probab=27.53 E-value=55 Score=22.90 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=12.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHh
Q 034746 32 PKHWKRNTAIAMAGIFLICIPIAM 55 (85)
Q Consensus 32 P~nWk~NTai~~v~i~~~~~~~~~ 55 (85)
+..|+. ..+++++++.+...+|+
T Consensus 167 ~~~w~~-~~~~~agv~~~~l~~~~ 189 (192)
T 1f16_A 167 TPTWQT-VTIFVAGVLTASLTIWK 189 (192)
T ss_dssp CSCCHH-HHHHHHHHHHHHHHHHT
T ss_pred CcchHH-HHHHHHHHHHHHHHhhh
Confidence 345774 34555555555555554
No 8
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=27.27 E-value=13 Score=29.11 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCCCC
Q 034746 1 MGGADHGHAGEGAHRDFRAKVWSMPGG 27 (85)
Q Consensus 1 mggg~~~~~~~~~~~pYPk~VWSPaGG 27 (85)
||-.+|.|+|..+-.|--.+.|||++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (460)
T 3uh0_A 1 MGSSHHHHHHSSGLVPRGSHMASATKN 27 (460)
T ss_dssp ---------------------------
T ss_pred CCCcccccccccCcccCCccccccCCC
Confidence 777788888877888888999999875
No 9
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=26.56 E-value=30 Score=20.40 Aligned_cols=26 Identities=4% Similarity=0.015 Sum_probs=17.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhhh
Q 034746 32 PKHWKRNTAIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 32 P~nWk~NTai~~v~i~~~~~~~~~~S 57 (85)
.+.-.++|.+.++.++++++.+|.++
T Consensus 23 r~e~~~~T~vViv~~~i~~~~i~~vD 48 (65)
T 3din_D 23 RKELLTSFGVVLVILAVTSVYFFVLD 48 (65)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888877777777776654
No 10
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=23.98 E-value=6 Score=28.66 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 034746 1 MGGADHGHAGEGAHRDFRAKVWSMPGGPNCRPKHWKRNTAIAMAGIFLICIPIAMKS 57 (85)
Q Consensus 1 mggg~~~~~~~~~~~pYPk~VWSPaGGW~~~P~nWk~NTai~~v~i~~~~~~~~~~S 57 (85)
||-.+|.|++..+.+++.++.=. .. +..-+|++.|++++++.+..-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~M~~--------~~--~~dV~IVGaG~aGl~~A~~L~~ 47 (398)
T 2xdo_A 1 MGSSHHHHHHSSGLVPRGSHMNL--------LS--DKNVAIIGGGPVGLTMAKLLQQ 47 (398)
T ss_dssp ----------------------C--------CT--TCEEEEECCSHHHHHHHHHHHT
T ss_pred CCccccccccccCcccCcccccc--------cC--CCCEEEECCCHHHHHHHHHHHH
Confidence 78888888888899999998411 11 2357888889988887776644
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.18 E-value=68 Score=19.78 Aligned_cols=13 Identities=23% Similarity=-0.143 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhh
Q 034746 44 AGIFLICIPIAMK 56 (85)
Q Consensus 44 v~i~~~~~~~~~~ 56 (85)
+.|++++..+|++
T Consensus 22 lliGllllliwk~ 34 (79)
T 2knc_B 22 LLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555666763
No 12
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=22.71 E-value=98 Score=17.69 Aligned_cols=20 Identities=20% Similarity=0.188 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 034746 37 RNTAIAMAGIFLICIPIAMK 56 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~~~~ 56 (85)
..|+++++.++++.+.++.+
T Consensus 37 ~~t~vv~~~v~~i~~~i~li 56 (65)
T 3bo0_B 37 KVTALGISLLGIIGYIIHVP 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhhhhHHHHHHHHHHHH
Confidence 45566666666666655544
No 13
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.49 E-value=96 Score=19.19 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcc
Q 034746 37 RNTAIAMAGIFLICIPIAMKSAE 59 (85)
Q Consensus 37 ~NTai~~v~i~~~~~~~~~~Sa~ 59 (85)
|+..+.+++|+.+..++..+|.+
T Consensus 18 RigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 18 QLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTH
T ss_pred eecchhhHHHHHHHHHHHHHcCc
Confidence 34556666666666666666653
Done!