STRING 9.05 
  AT3G48030 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT3G48030
hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein; hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN- protein binding, zinc ion binding; INVOLVED IN- response to hypoxia; EXPRESSED IN- hypocotyl, root; CONTAINS InterPro DOMAIN/s- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro-IPR013083), Hypoxia induced protein conserved region (InterPro-IPR007667); BEST Arabidopsis thaliana protein match is- zinc finger (C3HC4-type RING finger) family protein (TAIR-AT1G2398 [...] (349 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G74458
unknown protein; unknown protein; LOCATED IN- endomembrane system; Has 5 Blast hits to 5 protei [...] (94 aa)
       0.679
AT1G66300
F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (456 aa)
       0.677
AT1G46120
transposable element gene; copia-like retrotransposon family, has a 1.6e-32 P-value blast match [...] (1205 aa)
       0.677
AT5G26262
unknown protein; unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source- NCBI BLi [...] (35 aa)
       0.659
AT2G31141
unknown protein; unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source- NCBI BLi [...] (46 aa)
       0.659
AT1G55045
unknown protein; unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source- NCBI BLi [...] (65 aa)
       0.659
AT2G25980
jacalin lectin family protein; jacalin lectin family protein; FUNCTIONS IN- molecular_function [...] (449 aa)
       0.657
AT1G52120
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (459 aa)
       0.657
AT1G68870
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (147 aa)
       0.649
AT1G52070
jacalin lectin family protein; jacalin lectin family protein; FUNCTIONS IN- molecular_function [...] (315 aa)
       0.599
 
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Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
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