Query 034748
Match_columns 85
No_of_seqs 121 out of 376
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:03:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4431 Uncharacterized protei 100.0 6.9E-29 1.5E-33 166.5 6.8 79 7-85 8-93 (100)
2 PF04588 HIG_1_N: Hypoxia indu 99.9 5.7E-24 1.2E-28 127.9 2.9 54 20-73 1-54 (54)
3 PF11137 DUF2909: Protein of u 95.6 0.15 3.2E-06 31.7 7.5 51 24-74 3-55 (63)
4 COG3197 FixS Uncharacterized p 80.4 2.9 6.2E-05 25.8 3.3 25 24-48 6-30 (58)
5 PF03597 CcoS: Cytochrome oxid 77.3 4.8 0.00011 23.3 3.4 25 24-48 5-29 (45)
6 TIGR00847 ccoS cytochrome oxid 76.7 5 0.00011 24.0 3.4 25 24-48 6-30 (51)
7 PF12911 OppC_N: N-terminal TM 75.2 5.7 0.00012 22.6 3.4 26 18-43 10-35 (56)
8 TIGR02205 septum_zipA cell div 72.2 2.3 5E-05 33.1 1.6 25 23-47 4-28 (284)
9 PRK10132 hypothetical protein; 66.3 8.5 0.00018 25.9 3.1 24 20-43 82-105 (108)
10 PF10661 EssA: WXG100 protein 62.8 9.2 0.0002 26.9 2.9 25 21-45 116-141 (145)
11 PF05957 DUF883: Bacterial pro 61.4 11 0.00024 23.9 2.9 26 18-43 67-92 (94)
12 PF11240 DUF3042: Protein of u 57.8 16 0.00035 22.1 3.0 21 25-45 7-27 (54)
13 PRK03427 cell division protein 56.8 10 0.00022 30.4 2.6 25 22-46 6-30 (333)
14 PHA03049 IMV membrane protein; 56.8 16 0.00035 23.2 2.9 22 24-45 5-26 (68)
15 PRK04335 cell division protein 56.3 7 0.00015 31.0 1.5 29 23-51 6-35 (313)
16 PF05961 Chordopox_A13L: Chord 56.1 14 0.00031 23.5 2.6 22 24-45 5-26 (68)
17 PF09716 ETRAMP: Malarial earl 56.0 25 0.00054 22.5 3.8 31 12-43 43-74 (84)
18 PRK10404 hypothetical protein; 54.7 18 0.00038 24.0 3.1 23 20-42 76-98 (101)
19 PRK09400 secE preprotein trans 54.4 26 0.00056 21.4 3.5 22 23-44 30-51 (61)
20 PF11857 DUF3377: Domain of un 54.3 12 0.00026 24.1 2.1 28 23-50 33-61 (74)
21 PF05969 PSII_Ycf12: Photosyst 53.8 27 0.00059 19.2 3.2 24 25-48 9-32 (33)
22 COG4575 ElaB Uncharacterized c 53.2 17 0.00037 24.8 2.8 24 21-44 80-103 (104)
23 TIGR02598 Verrucomicrobium spi 51.1 39 0.00084 24.4 4.5 37 24-60 7-44 (151)
24 PRK00269 zipA cell division pr 50.7 13 0.00029 29.3 2.3 35 22-56 6-40 (293)
25 PF02308 MgtC: MgtC family; I 50.5 77 0.0017 21.5 6.4 54 23-80 25-78 (134)
26 PRK13751 putative mercuric tra 49.2 85 0.0018 21.6 6.0 51 23-75 48-108 (116)
27 PRK01741 cell division protein 48.8 18 0.00039 29.1 2.8 25 23-47 5-29 (332)
28 TIGR00327 secE_euk_arch protei 48.6 36 0.00078 20.9 3.5 21 24-44 27-47 (61)
29 COG2322 Predicted membrane pro 46.9 1.2E+02 0.0025 22.5 7.0 47 25-76 48-94 (177)
30 PF02529 PetG: Cytochrome B6-F 46.8 39 0.00085 19.1 3.2 23 27-49 10-34 (37)
31 TIGR02908 CoxD_Bacillus cytoch 45.8 58 0.0013 22.3 4.6 22 2-23 3-24 (110)
32 COG2717 Predicted membrane pro 45.1 1.3E+02 0.0029 22.6 6.8 23 22-44 113-135 (209)
33 PF14442 Bd3614_N: Bd3614-like 41.2 18 0.00039 25.7 1.5 29 35-63 43-71 (138)
34 PRK00665 petG cytochrome b6-f 41.2 52 0.0011 18.6 3.1 13 37-49 21-34 (37)
35 COG3115 ZipA Cell division pro 39.4 28 0.00061 27.9 2.5 23 23-45 6-28 (324)
36 CHL00008 petG cytochrome b6/f 39.2 57 0.0012 18.4 3.1 13 37-49 21-34 (37)
37 COG3228 Uncharacterized protei 37.7 23 0.00049 27.7 1.7 25 54-78 67-91 (266)
38 PF03530 SK_channel: Calcium-a 37.7 1.4E+02 0.0029 20.6 6.8 65 12-77 6-70 (119)
39 PF06166 DUF979: Protein of un 36.4 1.9E+02 0.0041 23.2 6.7 47 18-72 87-134 (308)
40 PHA00649 hypothetical protein 36.2 81 0.0018 20.5 3.9 37 11-47 36-82 (83)
41 PF03911 Sec61_beta: Sec61beta 36.2 52 0.0011 18.4 2.7 24 18-41 14-37 (41)
42 COG2443 Sss1 Preprotein transl 33.2 81 0.0018 19.7 3.4 14 30-43 38-51 (65)
43 PRK10369 heme lyase subunit Nr 32.5 3.1E+02 0.0068 23.5 7.8 55 24-78 176-233 (571)
44 PF09163 Form-deh_trans: Forma 32.4 76 0.0017 18.3 3.0 22 23-44 10-31 (44)
45 COG4760 Predicted membrane pro 32.1 1.8E+02 0.0038 22.7 5.7 47 25-71 144-190 (276)
46 TIGR00353 nrfE c-type cytochro 32.1 3.2E+02 0.0069 23.4 7.8 55 24-78 122-179 (576)
47 PF03907 Spo7: Spo7-like prote 31.2 2.3E+02 0.005 21.4 6.6 56 23-83 31-86 (207)
48 KOG4606 Uncharacterized conser 31.0 56 0.0012 22.8 2.6 27 56-82 29-55 (126)
49 PF12575 DUF3753: Protein of u 30.8 1E+02 0.0023 19.6 3.7 14 4-17 13-26 (72)
50 TIGR00341 conserved hypothetic 29.9 1.6E+02 0.0035 23.4 5.4 28 48-75 296-323 (325)
51 PF11174 DUF2970: Protein of u 29.8 90 0.0019 18.7 3.1 16 20-35 28-43 (56)
52 COG3838 VirB2 Type IV secretor 28.9 1.9E+02 0.0042 19.7 6.8 55 5-70 33-88 (108)
53 PF11293 DUF3094: Protein of u 28.8 1E+02 0.0022 18.8 3.2 22 22-43 25-46 (55)
54 COG3462 Predicted membrane pro 28.1 2E+02 0.0044 20.0 5.0 29 19-47 3-32 (117)
55 KOG3208 SNARE protein GS28 [In 28.1 54 0.0012 25.2 2.4 37 3-39 188-226 (231)
56 COG2165 PulG Type II secretory 27.9 1.5E+02 0.0033 18.5 4.2 41 24-64 15-56 (149)
57 PRK09977 putative Mg(2+) trans 27.7 2E+02 0.0043 21.4 5.3 20 58-77 67-86 (215)
58 PF06388 DUF1075: Protein of u 26.9 1.8E+02 0.0038 20.8 4.7 55 2-56 70-130 (146)
59 PF14012 DUF4229: Protein of u 26.8 1.5E+02 0.0033 18.1 3.9 25 22-46 29-53 (69)
60 cd03496 SQR_TypeC_CybS SQR cat 26.6 35 0.00075 22.6 1.0 34 11-44 54-88 (104)
61 PF07344 Amastin: Amastin surf 26.5 81 0.0018 21.8 2.9 20 50-70 54-73 (155)
62 PTZ00478 Sec superfamily; Prov 26.2 1.2E+02 0.0026 19.7 3.5 22 23-44 43-64 (81)
63 PF11460 DUF3007: Protein of u 26.1 2.2E+02 0.0047 19.4 5.4 47 24-77 7-53 (104)
64 PRK13686 hypothetical protein; 25.6 43 0.00092 19.5 1.1 23 26-48 20-42 (43)
65 PF03745 DUF309: Domain of unk 25.5 1.3E+02 0.0028 18.0 3.3 20 37-56 43-62 (62)
66 PHA02844 putative transmembran 24.1 1.2E+02 0.0026 19.6 3.1 13 4-16 13-25 (75)
67 PRK12886 ubiA prenyltransferas 22.2 3.6E+02 0.0077 20.5 7.8 35 44-78 253-289 (291)
68 PRK05696 fliL flagellar basal 21.6 1E+02 0.0022 21.6 2.7 6 4-9 1-6 (170)
69 CHL00184 ycf12 Ycf12; Provisio 21.5 81 0.0018 17.3 1.7 17 56-72 1-17 (33)
70 PF09813 Coiled-coil_56: Coile 21.3 1.3E+02 0.0029 20.3 3.0 23 56-78 47-69 (100)
71 PF06796 NapE: Periplasmic nit 21.2 1.8E+02 0.004 17.6 3.4 10 32-41 33-42 (56)
72 PF14015 DUF4231: Protein of u 21.1 2.2E+02 0.0048 17.7 4.8 16 51-66 74-89 (112)
73 PF06269 DUF1029: Protein of u 21.1 1E+02 0.0022 18.7 2.2 15 22-36 5-19 (53)
74 PTZ00234 variable surface prot 20.8 98 0.0021 25.5 2.7 22 18-39 361-382 (433)
75 PF09771 Tmemb_18A: Transmembr 20.7 1.8E+02 0.004 20.2 3.7 18 56-73 28-45 (125)
76 PF09608 Alph_Pro_TM: Putative 20.7 1.6E+02 0.0034 22.2 3.7 25 18-43 205-229 (236)
77 COG3105 Uncharacterized protei 20.2 2.3E+02 0.005 20.2 4.2 20 24-43 7-26 (138)
78 PRK10663 cytochrome o ubiquino 20.2 3.5E+02 0.0075 19.6 5.3 28 25-52 65-98 (204)
No 1
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=99.95 E-value=6.9e-29 Score=166.48 Aligned_cols=79 Identities=44% Similarity=0.638 Sum_probs=69.9
Q ss_pred CCCChhhh--hhh---hhhhcCchHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcc
Q 034748 7 VEPTLEDF--SEK---KKRVRNPLVPIGALMTAGVLTAGLISFR-QGNSHLGQLLMRARVVVQGATVGLM-VGTAYYYGD 79 (85)
Q Consensus 7 ~~p~~~~~--~~~---rK~~~~plvpig~~at~~~L~~Gl~~~r-~G~~~~SnklMr~RV~aQg~tV~~l-vg~~~~~~~ 79 (85)
+.|..||. +.| ||.+|||||||||++|++++++|+|++| +||+++||+|||+||+||||||++| +|.+|++.+
T Consensus 8 s~~~~~ed~~~~ekl~rk~kenP~VPlG~l~t~aal~~g~y~~r~rGn~~~sq~lmr~RVaAQgftV~AL~~G~~~~~~~ 87 (100)
T KOG4431|consen 8 SLPSYEEDMSQKEKLLRKAKENPLVPLGCLGTTAALTAGLYKFRSRGNSKMSQHLMRTRVAAQGFTVGALVLGLAYTMYK 87 (100)
T ss_pred CCCCCcchhhHHHHHHHHHHhCCCeeehHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 66666554 444 9999999999999999999999999999 9999999999999999999999776 777888888
Q ss_pred CccccC
Q 034748 80 TPWQSK 85 (85)
Q Consensus 80 ~~~~k~ 85 (85)
+++.|+
T Consensus 88 e~~~~~ 93 (100)
T KOG4431|consen 88 EYPAKE 93 (100)
T ss_pred chhhhh
Confidence 887764
No 2
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=99.89 E-value=5.7e-24 Score=127.90 Aligned_cols=54 Identities=56% Similarity=0.788 Sum_probs=43.9
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 034748 20 RVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGT 73 (85)
Q Consensus 20 ~~~~plvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~lvg~ 73 (85)
+||||++|+|+++|+++|.+|+++|++||+++|||+||+||+||++||++++++
T Consensus 1 ~ke~plv~ig~~~~~~~l~~g~~~~~~g~~~~s~klmr~RV~aQ~~tv~~l~~G 54 (54)
T PF04588_consen 1 FKENPLVPIGMLATVGALAYGLYNFRRGNMKTSQKLMRARVYAQGLTVAALVGG 54 (54)
T ss_dssp S-S--CHHHHHHHHHHHHHHHHHHHTSSS----SSSSS-SHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999999999999999999999998764
No 3
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=95.60 E-value=0.15 Score=31.73 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHHHHh-h-cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034748 24 PLVPIGALMTAGVLTAGLISF-R-QGNSHLGQLLMRARVVVQGATVGLMVGTA 74 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~-r-~G~~~~SnklMr~RV~aQg~tV~~lvg~~ 74 (85)
.++++-+++.++.|..|++.+ | +|+.++.-+..-+||.+-...+++++.+.
T Consensus 3 i~iv~lll~ii~sL~saL~~l~kd~~~~~rm~~~L~~RV~lS~~l~~lil~~~ 55 (63)
T PF11137_consen 3 ILIVLLLLAIIASLFSALFFLVKDKGSSKRMVKALGRRVGLSALLFLLILIAL 55 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999995 6 45777777788899999887777665433
No 4
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=80.44 E-value=2.9 Score=25.85 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCC
Q 034748 24 PLVPIGALMTAGVLTAGLISFRQGN 48 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~r~G~ 48 (85)
.++|+++++.++.|..-+|+.|.|+
T Consensus 6 ~Lipvsi~l~~v~l~~flWavksgQ 30 (58)
T COG3197 6 ILIPVSILLGAVGLGAFLWAVKSGQ 30 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccCC
Confidence 6899999999999999999999884
No 5
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=77.29 E-value=4.8 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCC
Q 034748 24 PLVPIGALMTAGVLTAGLISFRQGN 48 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~r~G~ 48 (85)
.++|++++..++++..-+|+.|+|+
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~GQ 29 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKSGQ 29 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4788899888888999999999885
No 6
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=76.68 E-value=5 Score=23.98 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCC
Q 034748 24 PLVPIGALMTAGVLTAGLISFRQGN 48 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~r~G~ 48 (85)
.++|++++..++++..-+|+.|+|+
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk~GQ 30 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4789999999999999999999884
No 7
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=75.18 E-value=5.7 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.6
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHHH
Q 034748 18 KKRVRNPLVPIGALMTAGVLTAGLIS 43 (85)
Q Consensus 18 rK~~~~plvpig~~at~~~L~~Gl~~ 43 (85)
|++++|++..+|++..+..++.++..
T Consensus 10 ~~f~~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 10 RRFRRNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999988888887
No 8
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=72.25 E-value=2.3 Score=33.08 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcC
Q 034748 23 NPLVPIGALMTAGVLTAGLISFRQG 47 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~r~G 47 (85)
-.|+++|+++.++.|+-|+|+.|+.
T Consensus 4 ~iLIIvGaiaI~aLl~hGlwt~Rke 28 (284)
T TIGR02205 4 IILIIVGILAIAALLFHGLWTSRKE 28 (284)
T ss_pred ehHHHHHHHHHHHHHHccccccccc
Confidence 4789999999999999999999753
No 9
>PRK10132 hypothetical protein; Provisional
Probab=66.32 E-value=8.5 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=20.2
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHH
Q 034748 20 RVRNPLVPIGALMTAGVLTAGLIS 43 (85)
Q Consensus 20 ~~~~plvpig~~at~~~L~~Gl~~ 43 (85)
..+||+--+|+++.+|++++-+.+
T Consensus 82 V~~~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 82 VRERPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999988877744
No 10
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=62.84 E-value=9.2 Score=26.92 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=18.4
Q ss_pred hcCchHHHHHHHHHHHHHHHHHH-hh
Q 034748 21 VRNPLVPIGALMTAGVLTAGLIS-FR 45 (85)
Q Consensus 21 ~~~plvpig~~at~~~L~~Gl~~-~r 45 (85)
.-.|.+.+.+++++++++.|+|. +|
T Consensus 116 ~~~~~i~~~i~g~ll~i~~giy~~~r 141 (145)
T PF10661_consen 116 PISPTILLSIGGILLAICGGIYVVLR 141 (145)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666677888889999988 45
No 11
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=61.44 E-value=11 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.5
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHHH
Q 034748 18 KKRVRNPLVPIGALMTAGVLTAGLIS 43 (85)
Q Consensus 18 rK~~~~plvpig~~at~~~L~~Gl~~ 43 (85)
+-.++||+--+|+++.+|+|++-+.+
T Consensus 67 ~~V~e~P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 67 DYVRENPWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999998876643
No 12
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=57.82 E-value=16 Score=22.12 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 034748 25 LVPIGALMTAGVLTAGLISFR 45 (85)
Q Consensus 25 lvpig~~at~~~L~~Gl~~~r 45 (85)
-+.+|.++|++++..+++.|+
T Consensus 7 G~l~G~~~t~aa~a~av~~~k 27 (54)
T PF11240_consen 7 GFLTGVAATLAAIAGAVFTFK 27 (54)
T ss_pred hHHHhHHHHHHHHHHHHHHHH
Confidence 357899999999999999996
No 13
>PRK03427 cell division protein ZipA; Provisional
Probab=56.84 E-value=10 Score=30.38 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhc
Q 034748 22 RNPLVPIGALMTAGVLTAGLISFRQ 46 (85)
Q Consensus 22 ~~plvpig~~at~~~L~~Gl~~~r~ 46 (85)
+.+|+++|.+|.++.|+=|+|+.|.
T Consensus 6 rLiLivvGAIAIiAlL~HGlWtsRK 30 (333)
T PRK03427 6 RLILIIVGAIAIIALLVHGFWTSRK 30 (333)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhccc
Confidence 3589999999999999999999864
No 14
>PHA03049 IMV membrane protein; Provisional
Probab=56.83 E-value=16 Score=23.21 Aligned_cols=22 Identities=14% Similarity=0.307 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q 034748 24 PLVPIGALMTAGVLTAGLISFR 45 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~r 45 (85)
.++.+=|+++++.++||+|+=+
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455668999999999999843
No 15
>PRK04335 cell division protein ZipA; Provisional
Probab=56.33 E-value=7 Score=31.02 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhc-CChhH
Q 034748 23 NPLVPIGALMTAGVLTAGLISFRQ-GNSHL 51 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~r~-G~~~~ 51 (85)
-.|+++|.+|.++.|+=|+|..|+ |+.+.
T Consensus 6 lvLiivGAlAI~ALL~HGlWtsrKe~~~~f 35 (313)
T PRK04335 6 FVLIVVGALAIAALLFHGLWTSKKEGKSKF 35 (313)
T ss_pred ehHHHHHHHHHHHHHHhccccccccccchh
Confidence 368999999999999999999874 55443
No 16
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=56.05 E-value=14 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q 034748 24 PLVPIGALMTAGVLTAGLISFR 45 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~r 45 (85)
.++.+=|+++++.++||+|+=+
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455668889999999999843
No 17
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=55.95 E-value=25 Score=22.45 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=14.3
Q ss_pred hhhhhhhh-hhcCchHHHHHHHHHHHHHHHHHH
Q 034748 12 EDFSEKKK-RVRNPLVPIGALMTAGVLTAGLIS 43 (85)
Q Consensus 12 ~~~~~~rK-~~~~plvpig~~at~~~L~~Gl~~ 43 (85)
||..+ +| .+..+.+.-++++++++++.+.+.
T Consensus 43 d~~i~-kK~k~kK~iiiS~i~s~lalli~~~~G 74 (84)
T PF09716_consen 43 DDKIE-KKKKNKKKIIISTIASGLALLIATALG 74 (84)
T ss_pred hHHHH-HHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 34444 44 344454444444455444444443
No 18
>PRK10404 hypothetical protein; Provisional
Probab=54.72 E-value=18 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.3
Q ss_pred hhcCchHHHHHHHHHHHHHHHHH
Q 034748 20 RVRNPLVPIGALMTAGVLTAGLI 42 (85)
Q Consensus 20 ~~~~plvpig~~at~~~L~~Gl~ 42 (85)
..+||+--+|+++.+|++++-+.
T Consensus 76 V~e~Pw~avGiaagvGlllG~Ll 98 (101)
T PRK10404 76 VHEKPWQGIGVGAAVGLVLGLLL 98 (101)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHH
Confidence 57899999999999888877663
No 19
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=54.43 E-value=26 Score=21.42 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 034748 23 NPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~ 44 (85)
+-+.-++.+..+|.++.|+..|
T Consensus 30 ~Ef~~ia~~~~iG~~i~G~iGf 51 (61)
T PRK09400 30 EEFLLVAKVTGLGILLIGLIGF 51 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777664
No 20
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=54.33 E-value=12 Score=24.12 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhh-cCChh
Q 034748 23 NPLVPIGALMTAGVLTAGLISFR-QGNSH 50 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~r-~G~~~ 50 (85)
...+|+-++.++.+|++.++.|| .|-++
T Consensus 33 aVviPl~L~LCiLvl~yai~~fkrkGtPr 61 (74)
T PF11857_consen 33 AVVIPLVLLLCILVLIYAIFQFKRKGTPR 61 (74)
T ss_pred EEeHHHHHHHHHHHHHHHhheeeecCCCc
Confidence 47789889999999999999996 66544
No 21
>PF05969 PSII_Ycf12: Photosystem II complex subunit Ycf12; InterPro: IPR010284 This family represents Ycf12, a core subunit of photosystem II; its function is unknown []. ; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3BZ2_y 3PRR_y 3PRQ_y 4FBY_m 3KZI_y 3BZ1_y 3A0B_y 3A0H_y 3ARC_Y.
Probab=53.78 E-value=27 Score=19.22 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCC
Q 034748 25 LVPIGALMTAGVLTAGLISFRQGN 48 (85)
Q Consensus 25 lvpig~~at~~~L~~Gl~~~r~G~ 48 (85)
+..++++..+|=+...+.++|+||
T Consensus 9 L~~l~liv~aGP~VI~lLa~r~Gn 32 (33)
T PF05969_consen 9 LTSLALIVLAGPLVIFLLAARKGN 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHcccHHhhHHHhhcCC
Confidence 455667777777888888889887
No 22
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=53.23 E-value=17 Score=24.76 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.0
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHh
Q 034748 21 VRNPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 21 ~~~plvpig~~at~~~L~~Gl~~~ 44 (85)
.+||+=-||+.+.+|.|++-+.+-
T Consensus 80 ~e~PWq~VGvaAaVGlllGlLlsR 103 (104)
T COG4575 80 RENPWQGVGVAAAVGLLLGLLLSR 103 (104)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhc
Confidence 689999999999999998877653
No 23
>TIGR02598 Verrucomicrobium spinosum paralogous family TIGR02598. This family consists of a paralogous family of proteins in the bacterium Verrucomicrobium spinosum. All members contain the prepilin-type N-terminal cleavage/methylation domain (TIGR02532) at the N-terminus. The mature protein would be about 150 amino acids long.
Probab=51.06 E-value=39 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHH
Q 034748 24 PLVPIGALMTAGVLTAGLISFR-QGNSHLGQLLMRARV 60 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~r-~G~~~~SnklMr~RV 60 (85)
-.+-+|++++++.-+.|+.... .+-...+|++-..|+
T Consensus 7 V~vALgI~A~A~laLl~llp~gld~LR~A~Nq~aearI 44 (151)
T TIGR02598 7 VVLAVGIAATVLLTLIGLLPTGLDTLRQSSNKQAEARI 44 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhHhHHHHHHHHHHHHHH
Confidence 4567788888888888877754 434557899999999
No 24
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=50.70 E-value=13 Score=29.33 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=27.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHHH
Q 034748 22 RNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLM 56 (85)
Q Consensus 22 ~~plvpig~~at~~~L~~Gl~~~r~G~~~~SnklM 56 (85)
+..|++||++..+++|+-|...+|+|..+.-.+++
T Consensus 6 ~~~livig~i~i~~il~~~~~r~r~~~gk~~~~~~ 40 (293)
T PRK00269 6 REWLIVIGIIVIAGILFDGWRRMRGGKGKLKFRLD 40 (293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 45789999999999999999999877555444443
No 25
>PF02308 MgtC: MgtC family; InterPro: IPR003416 The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known, but it is thought that MgtC may act as an accessory protein for MgtB, thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins.; GO: 0016020 membrane
Probab=50.53 E-value=77 Score=21.49 Aligned_cols=54 Identities=9% Similarity=-0.059 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 034748 23 NPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDT 80 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~lvg~~~~~~~~ 80 (85)
.-+..+++.++..+++........++... =-.||.+|.++...+++..+...++
T Consensus 25 RTf~Lv~l~g~l~~~l~~~~~~~~~~~~~----~~~rv~~~~v~gigfl~~g~i~~~~ 78 (134)
T PF02308_consen 25 RTFALVSLAGALSALLSSEFFLSFPGSNG----DPGRVAAGIVSGIGFLGAGAILKQG 78 (134)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccc----cHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 45667777777776665444433222222 4568899998877666665554443
No 26
>PRK13751 putative mercuric transport protein; Provisional
Probab=49.17 E-value=85 Score=21.58 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHHHHHHHHH-hhc------CC---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034748 23 NPLVPIGALMTAGVLTAGLIS-FRQ------GN---SHLGQLLMRARVVVQGATVGLMVGTAY 75 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~-~r~------G~---~~~SnklMr~RV~aQg~tV~~lvg~~~ 75 (85)
+|+=|.=++.+++++.+|.+. +|. |. ...++|. +|+++-..|+.+++...|
T Consensus 48 epyr~~fi~~a~~~l~~a~~~~yr~~~~C~~g~~Ca~p~~rk~--~k~~~Wi~~vlvl~~L~f 108 (116)
T PRK13751 48 EPYRPIFIGAALVALFFAWRRIYRPAAACKPGEVCAIPQVRAT--YKLIFWIVAALVLVALGF 108 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccCCCCccCCcccchH--HHHHHHHHHHHHHHHHHh
Confidence 466666677778888888887 442 11 2335664 888888888877655544
No 27
>PRK01741 cell division protein ZipA; Provisional
Probab=48.82 E-value=18 Score=29.07 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcC
Q 034748 23 NPLVPIGALMTAGVLTAGLISFRQG 47 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~r~G 47 (85)
-+|+++|+++.++...-|+|+=||-
T Consensus 5 ~iliILg~lal~~Lv~hgiWsnRrE 29 (332)
T PRK01741 5 TILIILGILALVALVAHGIWSNRRE 29 (332)
T ss_pred ehHHHHHHHHHHHHHHhhhhhhhhH
Confidence 4789999999999999999998653
No 28
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=48.63 E-value=36 Score=20.89 Aligned_cols=21 Identities=14% Similarity=0.542 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 034748 24 PLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~ 44 (85)
-+.-++.+..+|.++.|+..|
T Consensus 27 Ef~~iak~t~iG~~i~G~IGf 47 (61)
T TIGR00327 27 EYLKVAKVTGIGIIIVGIIGY 47 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666554
No 29
>COG2322 Predicted membrane protein [Function unknown]
Probab=46.88 E-value=1.2e+02 Score=22.53 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034748 25 LVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYY 76 (85)
Q Consensus 25 lvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~lvg~~~~ 76 (85)
+-.+-...+...+..|.+-.|+||.+ .+.|.++-+++.+++....|.
T Consensus 48 lnai~~~~s~~~llag~~~Ikrg~i~-----~Hk~aMltA~~l~l~FlvlYl 94 (177)
T COG2322 48 LNAIFNSLSFIFLLAGWRLIKRGNIE-----KHKRAMLTAFTLALVFLVLYL 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666778888888988765 355666777776654333333
No 30
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=46.79 E-value=39 Score=19.11 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=10.1
Q ss_pred HHHHHHHHHH-HHHHHHH-hhcCCh
Q 034748 27 PIGALMTAGV-LTAGLIS-FRQGNS 49 (85)
Q Consensus 27 pig~~at~~~-L~~Gl~~-~r~G~~ 49 (85)
.+|++-++.+ |....|. +||||.
T Consensus 10 VlGli~vtl~Glfv~Ay~QY~Rg~q 34 (37)
T PF02529_consen 10 VLGLIPVTLAGLFVAAYLQYRRGNQ 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS--T
T ss_pred HHHhHHHHHHHHHHHHHHHHhcccc
Confidence 3455444333 4444444 678764
No 31
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=45.82 E-value=58 Score=22.28 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=14.6
Q ss_pred CCCCCCCCChhhhhhhhhhhcC
Q 034748 2 DKIGTVEPTLEDFSEKKKRVRN 23 (85)
Q Consensus 2 ~~~~~~~p~~~~~~~~rK~~~~ 23 (85)
|+++...|..+..+++||..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (110)
T TIGR02908 3 DNMSTGKINSDLEFQKAKNAEE 24 (110)
T ss_pred CccCCCCCchhHHHHHHHhccc
Confidence 6777788877755555665554
No 32
>COG2717 Predicted membrane protein [Function unknown]
Probab=45.06 E-value=1.3e+02 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHh
Q 034748 22 RNPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 22 ~~plvpig~~at~~~L~~Gl~~~ 44 (85)
..|++.+|+++........+-|+
T Consensus 113 ~rpyitiG~iaflll~pLalTS~ 135 (209)
T COG2717 113 KRPYITIGMIAFLLLIPLALTSF 135 (209)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhh
Confidence 46999999999998888877543
No 33
>PF14442 Bd3614_N: Bd3614-like deaminase N-terminal
Probab=41.17 E-value=18 Score=25.73 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 034748 35 GVLTAGLISFRQGNSHLGQLLMRARVVVQ 63 (85)
Q Consensus 35 ~~L~~Gl~~~r~G~~~~SnklMr~RV~aQ 63 (85)
+=|+.|++.--.|.++..|.|||.||+--
T Consensus 43 v~LvlG~~a~e~~gR~~~~sw~R~Ri~TT 71 (138)
T PF14442_consen 43 VRLVLGARAREAGGRNHADSWMRRRIFTT 71 (138)
T ss_pred HHHHhccccccccccccccHHHHHhhhhh
Confidence 34666766545778899999999999865
No 34
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=41.16 E-value=52 Score=18.60 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=7.6
Q ss_pred HHHHHHH-hhcCCh
Q 034748 37 LTAGLIS-FRQGNS 49 (85)
Q Consensus 37 L~~Gl~~-~r~G~~ 49 (85)
|+...|. +||||.
T Consensus 21 lfvaAylQYrRg~~ 34 (37)
T PRK00665 21 LFVAAWNQYKRGNQ 34 (37)
T ss_pred HHHHHHHHHhcccc
Confidence 4444444 788874
No 35
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=39.44 E-value=28 Score=27.95 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhh
Q 034748 23 NPLVPIGALMTAGVLTAGLISFR 45 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~r 45 (85)
.+|+++|++|.++.|+-|+|+-|
T Consensus 6 ~ILIIvG~IAIiaLLvhGlWtsR 28 (324)
T COG3115 6 LILIIVGAIAIIALLVHGLWTSR 28 (324)
T ss_pred hHHHHHHHHHHHHHHHhhhhhcc
Confidence 57999999999999999999964
No 36
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=39.16 E-value=57 Score=18.43 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=7.6
Q ss_pred HHHHHHH-hhcCCh
Q 034748 37 LTAGLIS-FRQGNS 49 (85)
Q Consensus 37 L~~Gl~~-~r~G~~ 49 (85)
|+...|. +||||.
T Consensus 21 lfvaAylQYrRg~~ 34 (37)
T CHL00008 21 LFVTAYLQYRRGDQ 34 (37)
T ss_pred HHHHHHHHHhhccc
Confidence 4444444 788874
No 37
>COG3228 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.71 E-value=23 Score=27.71 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 034748 54 LLMRARVVVQGATVGLMVGTAYYYG 78 (85)
Q Consensus 54 klMr~RV~aQg~tV~~lvg~~~~~~ 78 (85)
-.||.||+||++..++=+|.-||.+
T Consensus 67 d~~~l~IAa~aclp~LeLg~~wy~g 91 (266)
T COG3228 67 DEMRLRIAAQACLPVLELGLEWYDG 91 (266)
T ss_pred hHHHHHHHHHHHHHHHHhccccccc
Confidence 4799999999998887678888765
No 38
>PF03530 SK_channel: Calcium-activated SK potassium channel; InterPro: IPR011996 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. SK channels are thought to play an important role in the functioning of all excitable tissues. To date, 3 subtypes (designated SK1-SK3) have been cloned, each of which possesses a different tissue expression profile: SK1 channels are expressed in the heart; SK2 channels are found in the adrenal gland; and SK3 channels are known to be present in skeletal muscle []. SK channels have a single-channel conductance of 2-20 pS and are activated by rises in cytosolic calcium with half maximal activation in the 400-800 nM range [, ]. Unlike BK channels, they are voltage insensitive and unaffected by low concentrations of TEA, charybdotoxin, or iberiotoxin. However, they are potently blocked by the bee venom apamin [, ], tubocurarine, and quaternary salts of bicuculline [, ]. A new series of compounds that block SK channels include dequalinium Synonym(s): SK Channel This entry represents a conserved region, found in proteins of SK channels family.
Probab=37.68 E-value=1.4e+02 Score=20.62 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=43.4
Q ss_pred hhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034748 12 EDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYY 77 (85)
Q Consensus 12 ~~~~~~rK~~~~plvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~lvg~~~~~ 77 (85)
.+.+++||...+.-...|+.+.+..++=-=.+ -+-+.+.|...+=.|..-..-|++++...++|.
T Consensus 6 k~L~e~R~rlsD~aL~~a~~GIvlMvie~El~-~~~~~k~s~~sl~Lk~lis~ST~~Ll~lii~yH 70 (119)
T PF03530_consen 6 KALFEKRKRLSDYALFFAMFGIVLMVIETELS-WGVYTKSSMYSLALKCLISLSTIILLGLIIAYH 70 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888877777777776665433222 122466788888889999999988864444443
No 39
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=36.40 E-value=1.9e+02 Score=23.18 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=25.2
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHHH-hhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034748 18 KKRVRNPLVPIGALMTAGVLTAGLIS-FRQGNSHLGQLLMRARVVVQGATVGLMVG 72 (85)
Q Consensus 18 rK~~~~plvpig~~at~~~L~~Gl~~-~r~G~~~~SnklMr~RV~aQg~tV~~lvg 72 (85)
+|.....|+|.-+++++.++..-++. +.-.|++. ....++.++++++
T Consensus 87 ~rlGnklFiPal~i~v~a~~~a~~~~~l~l~d~~~--------~tlv~lgig~i~A 134 (308)
T PF06166_consen 87 KRLGNKLFIPALLIPVVAVIGAQLFTKLPLLDPKN--------GTLVGLGIGAIVA 134 (308)
T ss_pred HHhcCeehHHHHHHHHHHHHHHHHhccccccCCCc--------chHHHHHHHHHHH
Confidence 55666788887666666655544322 32223332 3355666655433
No 40
>PHA00649 hypothetical protein
Probab=36.24 E-value=81 Score=20.47 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=18.0
Q ss_pred hhhhhhh-------hhhhcC-chHHHHHHH--HHHHHHHHHHHhhcC
Q 034748 11 LEDFSEK-------KKRVRN-PLVPIGALM--TAGVLTAGLISFRQG 47 (85)
Q Consensus 11 ~~~~~~~-------rK~~~~-plvpig~~a--t~~~L~~Gl~~~r~G 47 (85)
.|||.+. ||..+. -|..+|+++ ..+++..|+-++-+|
T Consensus 36 VEEFr~D~~~~Rr~RKA~D~G~L~~VGL~~~~iGAA~W~G~~s~Lgg 82 (83)
T PHA00649 36 VEEFREDLRFGRRMRKAADHGFLALVGLVAVALGAAVWAGITSKLGG 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566655 555543 333444433 334455565554443
No 41
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=36.17 E-value=52 Score=18.44 Aligned_cols=24 Identities=8% Similarity=-0.121 Sum_probs=15.8
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHH
Q 034748 18 KKRVRNPLVPIGALMTAGVLTAGL 41 (85)
Q Consensus 18 rK~~~~plvpig~~at~~~L~~Gl 41 (85)
.+.|-+|...+.+....++....+
T Consensus 14 ~giki~P~~Vl~~si~fi~~V~~L 37 (41)
T PF03911_consen 14 PGIKIDPKTVLIISIAFIAIVILL 37 (41)
T ss_dssp -SS-BSCCHHHHHHHHHHHHHHHH
T ss_pred CcceeCCeehHHHHHHHHHHHHHH
Confidence 578889998887776666655443
No 42
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=33.21 E-value=81 Score=19.74 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 034748 30 ALMTAGVLTAGLIS 43 (85)
Q Consensus 30 ~~at~~~L~~Gl~~ 43 (85)
=++-++.++.|+..
T Consensus 38 Ki~~~Gi~liG~IG 51 (65)
T COG2443 38 KITGLGILLIGIIG 51 (65)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 43
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=32.50 E-value=3.1e+02 Score=23.51 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHHHHHHHh-hcCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Q 034748 24 PLVPIGALMTAGVLTAGLISF-RQGNSHLGQLLMR--ARVVVQGATVGLMVGTAYYYG 78 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~-r~G~~~~SnklMr--~RV~aQg~tV~~lvg~~~~~~ 78 (85)
|++-+|-++.+.+...++... +++-.+.-.+++| ..+.+=++|+++++|..|.+.
T Consensus 176 p~l~lgYa~~~v~fa~a~~~Ll~~~~~~~~~~~~~~~~~~gw~fLT~GI~lG~~WAy~ 233 (571)
T PRK10369 176 PLLYLGYGGLMVAASVALASLLRGEFDAACARICWRWALPGWSALTAGIILGSWWAYC 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555667777777777777774 4332222223333 356778888898999888875
No 44
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=32.39 E-value=76 Score=18.35 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 034748 23 NPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~ 44 (85)
.++=|+|.++..++++.+++.+
T Consensus 10 g~~Kpl~~~~~~~~~~~~~~Hy 31 (44)
T PF09163_consen 10 GVLKPLGAAGMGATAAAGFFHY 31 (44)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888888885
No 45
>COG4760 Predicted membrane protein [Function unknown]
Probab=32.12 E-value=1.8e+02 Score=22.73 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 034748 25 LVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMV 71 (85)
Q Consensus 25 lvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~lv 71 (85)
++-=++++|.++++..+..+|.|-.+-.-|+=|.=+++-+=.+++++
T Consensus 144 ligqAvLgT~Gvf~gML~vYktGaIkvTpkF~r~v~a~~~Gvl~L~L 190 (276)
T COG4760 144 LIGQAVLGTFGVFFGMLVVYKTGAIKVTPKFTRMVVAATFGVLVLML 190 (276)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcCceeecchhHHHHHHHHHHHHHHHH
Confidence 44447889999999999999999877777777776666555444443
No 46
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=32.08 E-value=3.2e+02 Score=23.35 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Q 034748 24 PLVPIGALMTAGVLTAGLISFRQGN-SHLGQLLMR--ARVVVQGATVGLMVGTAYYYG 78 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~r~G~-~~~SnklMr--~RV~aQg~tV~~lvg~~~~~~ 78 (85)
|++-+|-++.+.+...++..+-.|+ .+.-.++.| ..+++=+.|++++.|..|.+.
T Consensus 122 p~~~lgya~~~v~f~~a~~~L~~~~~~~~~~~~~~~~~~~g~~flt~Gi~~G~~WAy~ 179 (576)
T TIGR00353 122 PLLYMGYVGFSVAFAFALASLLRGELDSACARICRPWTLAAWSFLTLGIVLGSWWAYY 179 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566677778888888887764443 233334444 356677778888888888865
No 47
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=31.24 E-value=2.3e+02 Score=21.40 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 034748 23 NPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDTPWQ 83 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~lvg~~~~~~~~~~~ 83 (85)
+-+....+++.++.+++.++---+-+. .. =.|+..|++-++.++..+.++...-++
T Consensus 31 yt~FL~~L~~~i~~~~y~lf~~~~~~~-~g----~~~~~~~~~ll~~vvTlvLf~~SG~y~ 86 (207)
T PF03907_consen 31 YTFFLSLLCLWIAFFFYALFFRPREDG-TG----LVRYFLKFCLLFGVVTLVLFWASGMYE 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhh-hH----HHHHHHHHHHHHHHHHHHHhhccceee
Confidence 344445566777777777654211111 11 467778888777765555555444443
No 48
>KOG4606 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=56 Score=22.84 Aligned_cols=27 Identities=22% Similarity=0.065 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcc
Q 034748 56 MRARVVVQGATVGLMVGTAYYYGDTPW 82 (85)
Q Consensus 56 Mr~RV~aQg~tV~~lvg~~~~~~~~~~ 82 (85)
-|||++.-.+.|..-..++||+-.+++
T Consensus 29 ~RWRi~lvi~svc~gaigawywl~dpe 55 (126)
T KOG4606|consen 29 GRWRIALVIFSVCTGAIGAWYWLIDPE 55 (126)
T ss_pred cchhhHHHHHHHHHHhhhhhhhhcCcc
Confidence 489999888888774445666655543
No 49
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=30.77 E-value=1e+02 Score=19.64 Aligned_cols=14 Identities=7% Similarity=0.356 Sum_probs=10.6
Q ss_pred CCCCCCChhhhhhh
Q 034748 4 IGTVEPTLEDFSEK 17 (85)
Q Consensus 4 ~~~~~p~~~~~~~~ 17 (85)
|.+.+.|++++.+.
T Consensus 13 mss~ddDf~~Fi~v 26 (72)
T PF12575_consen 13 MSSSDDDFNNFINV 26 (72)
T ss_pred cCCCHHHHHHHHHH
Confidence 56677788888885
No 50
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=29.93 E-value=1.6e+02 Score=23.45 Aligned_cols=28 Identities=0% Similarity=-0.009 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034748 48 NSHLGQLLMRARVVVQGATVGLMVGTAY 75 (85)
Q Consensus 48 ~~~~SnklMr~RV~aQg~tV~~lvg~~~ 75 (85)
+.+...+.+++.+++=+..++++...++
T Consensus 296 ~~~~a~~~~~~~~~~~~~l~~~l~~~i~ 323 (325)
T TIGR00341 296 KKKVARKYLARSLIALTLLLIALLFLSI 323 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999888877776655554
No 51
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=29.80 E-value=90 Score=18.71 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=8.4
Q ss_pred hhcCchHHHHHHHHHH
Q 034748 20 RVRNPLVPIGALMTAG 35 (85)
Q Consensus 20 ~~~~plvpig~~at~~ 35 (85)
.+--|++..|+++++.
T Consensus 28 ~~p~~~Ii~gii~~~~ 43 (56)
T PF11174_consen 28 GSPVHFIIVGIILAAL 43 (56)
T ss_pred CCCchHHHHHHHHHHH
Confidence 3344566666655543
No 52
>COG3838 VirB2 Type IV secretory pathway, VirB2 components (pilins) [Intracellular trafficking and secretion]
Probab=28.87 E-value=1.9e+02 Score=19.67 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=29.4
Q ss_pred CCCCCChhhhhhh-hhhhcCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 034748 5 GTVEPTLEDFSEK-KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLM 70 (85)
Q Consensus 5 ~~~~p~~~~~~~~-rK~~~~plvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~l 70 (85)
+++.| -|+.+++ .++..-|+. ..++++++...|+--+.+ .+.||...|.+.-+.+
T Consensus 33 a~s~p-~~~~lq~I~~sltGp~A--~~iAVi~Ii~~Gi~~~fG--------~~~~~r~~~vV~gi~i 88 (108)
T COG3838 33 AQSAP-WETPLQQILQSLTGPVA--KTIAVIGIIAIGIMLIFG--------RLDWRRALQVVIGIVI 88 (108)
T ss_pred cccCc-HHHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHH
Confidence 45556 4555554 566555543 234444444444444333 4567788887775544
No 53
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.85 E-value=1e+02 Score=18.82 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=15.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHH
Q 034748 22 RNPLVPIGALMTAGVLTAGLIS 43 (85)
Q Consensus 22 ~~plvpig~~at~~~L~~Gl~~ 43 (85)
..||-|.-+++.+++...|+.-
T Consensus 25 R~PFrP~~Ll~~li~Vv~gl~l 46 (55)
T PF11293_consen 25 RKPFRPWRLLIVLIVVVIGLGL 46 (55)
T ss_pred cCCcchHHHHHHHHHHHHHHHH
Confidence 3588888777777776666643
No 54
>COG3462 Predicted membrane protein [Function unknown]
Probab=28.08 E-value=2e+02 Score=19.98 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=19.5
Q ss_pred hhhcC-chHHHHHHHHHHHHHHHHHHhhcC
Q 034748 19 KRVRN-PLVPIGALMTAGVLTAGLISFRQG 47 (85)
Q Consensus 19 K~~~~-plvpig~~at~~~L~~Gl~~~r~G 47 (85)
|..|| ..+.+|++|++.++..--..+.+|
T Consensus 3 k~ven~~w~ligliavi~~v~li~~~~~gg 32 (117)
T COG3462 3 KKVENFAWLLIGLIAVIAVVGLIPSGFHGG 32 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 44455 578889998888876655555544
No 55
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.06 E-value=54 Score=25.21 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCCCCCCChhhhhhh--hhhhcCchHHHHHHHHHHHHHH
Q 034748 3 KIGTVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTA 39 (85)
Q Consensus 3 ~~~~~~p~~~~~~~~--rK~~~~plvpig~~at~~~L~~ 39 (85)
.+++..|.......+ +|.+.+-|+..+++++|..|+.
T Consensus 188 ~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llll 226 (231)
T KOG3208|consen 188 NIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLL 226 (231)
T ss_pred HHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 356778887777776 6667777777666666655543
No 56
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.91 E-value=1.5e+02 Score=18.53 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHHHHH-hhcCChhHHHHHHHHHHHHHH
Q 034748 24 PLVPIGALMTAGVLTAGLIS-FRQGNSHLGQLLMRARVVVQG 64 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~-~r~G~~~~SnklMr~RV~aQg 64 (85)
.+|.+.+++.+++++.-.+. ..+...+..+.....+++.+.
T Consensus 15 lLVvl~Iigil~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (149)
T COG2165 15 LLVVLAIIGILAALALPSLQGSIDKAKRLEAAQQALRVIRLA 56 (149)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544433333 222222344444444444443
No 57
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=27.74 E-value=2e+02 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034748 58 ARVVVQGATVGLMVGTAYYY 77 (85)
Q Consensus 58 ~RV~aQg~tV~~lvg~~~~~ 77 (85)
.||++|.++-.-++|..+..
T Consensus 67 ~Ri~a~vvsGigFlGag~I~ 86 (215)
T PRK09977 67 SRIAAQVVTGVGFIGAGNIL 86 (215)
T ss_pred HHHHHHHHHHHHHHHHhhhe
Confidence 49999999765554444333
No 58
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=26.92 E-value=1.8e+02 Score=20.83 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=28.8
Q ss_pred CCCCCCCCCh-hhhhhh----hhhh-cCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHHH
Q 034748 2 DKIGTVEPTL-EDFSEK----KKRV-RNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLM 56 (85)
Q Consensus 2 ~~~~~~~p~~-~~~~~~----rK~~-~~plvpig~~at~~~L~~Gl~~~r~G~~~~SnklM 56 (85)
+++++.|+.. .|..+. -+.+ -+..+.+.+++++++++.|=..-++|+.-+++.+=
T Consensus 70 Ks~~eIPe~Vs~e~l~~arnk~RIkv~~~Mi~lTiiGc~~mv~sGK~aa~r~eslt~~Nle 130 (146)
T PF06388_consen 70 KSEEEIPETVSFEMLDAARNKARIKVCYIMIALTIIGCIAMVISGKRAAKRGESLTKQNLE 130 (146)
T ss_pred CChhhCcCccCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHhHH
Confidence 4566665553 244443 1222 23444555555555566665556788766665543
No 59
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=26.81 E-value=1.5e+02 Score=18.12 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=17.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhc
Q 034748 22 RNPLVPIGALMTAGVLTAGLISFRQ 46 (85)
Q Consensus 22 ~~plvpig~~at~~~L~~Gl~~~r~ 46 (85)
+.|++..++++.+.+...+..-+++
T Consensus 29 ~~p~~~~~l~A~vis~~lS~~ll~~ 53 (69)
T PF14012_consen 29 EVPLLVAALLALVISMPLSYVLLRR 53 (69)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777666654
No 60
>cd03496 SQR_TypeC_CybS SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Eukaryotic SQRs reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. CybS and CybL are the two transmembrane proteins of eukaryotic SQRs. They contain heme and quinone binding sites. CybS is the eukaryotic homolog of the bacterial SdhD subunit. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the transmembrane subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of
Probab=26.59 E-value=35 Score=22.61 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=23.0
Q ss_pred hhhhhhhhhhhc-CchHHHHHHHHHHHHHHHHHHh
Q 034748 11 LEDFSEKKKRVR-NPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 11 ~~~~~~~rK~~~-~plvpig~~at~~~L~~Gl~~~ 44 (85)
.||+..+|+... .++..++..+..++.++|++.|
T Consensus 54 IeDYv~~~~~~~~~~~a~~~~~~~s~~~l~Gl~~~ 88 (104)
T cd03496 54 IIDYVPKRVGGKLHKLAMYLLYAGSALSLAGLYYF 88 (104)
T ss_pred eeecCCCcccchHHHHHHHHHHHHHHHHHHHheee
Confidence 467777664433 4566667777777788888876
No 61
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=26.52 E-value=81 Score=21.78 Aligned_cols=20 Identities=20% Similarity=0.049 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 034748 50 HLGQLLMRARVVVQGATVGLM 70 (85)
Q Consensus 50 ~~SnklMr~RV~aQg~tV~~l 70 (85)
..+++..|.|+ +|+++|+.+
T Consensus 54 ~C~~~~~~f~a-a~afaIisi 73 (155)
T PF07344_consen 54 NCPQRRSRFRA-AQAFAIISI 73 (155)
T ss_pred CCcHHHHHHHH-HHHHHHHHH
Confidence 45677777777 788888664
No 62
>PTZ00478 Sec superfamily; Provisional
Probab=26.17 E-value=1.2e+02 Score=19.71 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=16.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 034748 23 NPLVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~ 44 (85)
.-+.=++.+..+|.++.|+..|
T Consensus 43 kEf~kiakat~iGf~imG~IGy 64 (81)
T PTZ00478 43 KEYTNIAYACSVGFFIMGFIGY 64 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777788888888764
No 63
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=26.15 E-value=2.2e+02 Score=19.37 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034748 24 PLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYY 77 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~lvg~~~~~ 77 (85)
.++.+|+.+..+++..++-. -+=|...+ =+++|++.|+.+++.+..|
T Consensus 7 l~Iglgv~~~Gg~~Y~~l~~-~G~d~~~A------Gi~sq~~lv~glvgW~~sY 53 (104)
T PF11460_consen 7 LLIGLGVFLLGGLLYGGLQA-AGLDSLSA------GIWSQALLVLGLVGWVSSY 53 (104)
T ss_pred eeecHHHHHHHHHHHHHHHH-cCCCchhh------hHHHHHHHHHHHHHHHhHH
Confidence 45555555554444444432 12133333 3568998888777765443
No 64
>PRK13686 hypothetical protein; Provisional
Probab=25.65 E-value=43 Score=19.52 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 034748 26 VPIGALMTAGVLTAGLISFRQGN 48 (85)
Q Consensus 26 vpig~~at~~~L~~Gl~~~r~G~ 48 (85)
..++++..+|=+...+.++|+||
T Consensus 20 ~~l~lIv~aGP~VI~lLa~R~Gn 42 (43)
T PRK13686 20 TFVALIVIAGPVVIFLLAFRGGD 42 (43)
T ss_pred HHHHHHHHcCCHheehhhhhcCC
Confidence 34455555556777778888887
No 65
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.45 E-value=1.3e+02 Score=17.98 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=15.6
Q ss_pred HHHHHHHhhcCChhHHHHHH
Q 034748 37 LTAGLISFRQGNSHLGQLLM 56 (85)
Q Consensus 37 L~~Gl~~~r~G~~~~SnklM 56 (85)
+..+++..++||.+.+.++|
T Consensus 43 ~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 43 LAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHhC
Confidence 44566778999999988875
No 66
>PHA02844 putative transmembrane protein; Provisional
Probab=24.13 E-value=1.2e+02 Score=19.59 Aligned_cols=13 Identities=8% Similarity=0.417 Sum_probs=9.7
Q ss_pred CCCCCCChhhhhh
Q 034748 4 IGTVEPTLEDFSE 16 (85)
Q Consensus 4 ~~~~~p~~~~~~~ 16 (85)
|.+.+.||+|+.+
T Consensus 13 msS~DdDFnnFI~ 25 (75)
T PHA02844 13 LSSENEDFNNFID 25 (75)
T ss_pred cCCchHHHHHHHH
Confidence 5677777887776
No 67
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=22.19 E-value=3.6e+02 Score=20.47 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=19.1
Q ss_pred hhcCCh-hHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q 034748 44 FRQGNS-HLGQLLMRARVVVQG-ATVGLMVGTAYYYG 78 (85)
Q Consensus 44 ~r~G~~-~~SnklMr~RV~aQg-~tV~~lvg~~~~~~ 78 (85)
++..|. +.+.++++.-++.-. +.+++++...+|.+
T Consensus 253 ~~~~~~~~~~~~~F~~~~~~~~~l~~~~~~~~~~~~~ 289 (291)
T PRK12886 253 LRGGDLTRLDAAFFNMNGYISVTLFAATLFDRLFYFG 289 (291)
T ss_pred hCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 455563 466788888777652 22233454444443
No 68
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.63 E-value=1e+02 Score=21.56 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.8
Q ss_pred CCCCCC
Q 034748 4 IGTVEP 9 (85)
Q Consensus 4 ~~~~~p 9 (85)
||+.+.
T Consensus 1 MA~~~~ 6 (170)
T PRK05696 1 MAEEEA 6 (170)
T ss_pred CCCccc
Confidence 555443
No 69
>CHL00184 ycf12 Ycf12; Provisional
Probab=21.46 E-value=81 Score=17.33 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034748 56 MRARVVVQGATVGLMVG 72 (85)
Q Consensus 56 Mr~RV~aQg~tV~~lvg 72 (85)
|.|-|++|-.++++++.
T Consensus 1 mN~evi~QL~~l~lIv~ 17 (33)
T CHL00184 1 MNLEVIAQLTSLALIVL 17 (33)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 56789999999887643
No 70
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=21.29 E-value=1.3e+02 Score=20.29 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 034748 56 MRARVVVQGATVGLMVGTAYYYG 78 (85)
Q Consensus 56 Mr~RV~aQg~tV~~lvg~~~~~~ 78 (85)
.|.|=..=|+++++++.++|.|.
T Consensus 47 ~R~rN~~Tgl~L~~~v~gIY~YT 69 (100)
T PF09813_consen 47 RRRRNLLTGLALGAFVVGIYAYT 69 (100)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhe
Confidence 36677788889988888888874
No 71
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=21.24 E-value=1.8e+02 Score=17.61 Aligned_cols=10 Identities=30% Similarity=0.029 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 034748 32 MTAGVLTAGL 41 (85)
Q Consensus 32 at~~~L~~Gl 41 (85)
+++.+-.||+
T Consensus 33 ~v~~Vg~YGF 42 (56)
T PF06796_consen 33 AVAFVGGYGF 42 (56)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 72
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=21.11 E-value=2.2e+02 Score=17.73 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 034748 51 LGQLLMRARVVVQGAT 66 (85)
Q Consensus 51 ~SnklMr~RV~aQg~t 66 (85)
..++++++|-.++.+=
T Consensus 74 ~~~~W~~~r~tae~lk 89 (112)
T PF14015_consen 74 FHERWIRYRATAESLK 89 (112)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3445666666655543
No 73
>PF06269 DUF1029: Protein of unknown function (DUF1029); InterPro: IPR009372 This entry is represented by Vaccinia virus, A14.5L; it is a family of uncharacterised viral proteins.
Probab=21.09 E-value=1e+02 Score=18.72 Aligned_cols=15 Identities=27% Similarity=0.498 Sum_probs=10.9
Q ss_pred cCchHHHHHHHHHHH
Q 034748 22 RNPLVPIGALMTAGV 36 (85)
Q Consensus 22 ~~plvpig~~at~~~ 36 (85)
-+|++.+||.+++.+
T Consensus 5 YeP~iL~~i~~~al~ 19 (53)
T PF06269_consen 5 YEPLILLGIICAALL 19 (53)
T ss_pred cccHHHHHHHHHHHH
Confidence 369999888776544
No 74
>PTZ00234 variable surface protein Vir12; Provisional
Probab=20.84 E-value=98 Score=25.53 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=18.7
Q ss_pred hhhhcCchHHHHHHHHHHHHHH
Q 034748 18 KKRVRNPLVPIGALMTAGVLTA 39 (85)
Q Consensus 18 rK~~~~plvpig~~at~~~L~~ 39 (85)
-.+..|+++-+++++|+..|++
T Consensus 361 Sn~~rniim~~ailGtifFlfy 382 (433)
T PTZ00234 361 SEYFRHSIVGASIIGVLVFLFF 382 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHhhh
Confidence 4577899999999999988876
No 75
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=20.67 E-value=1.8e+02 Score=20.24 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034748 56 MRARVVVQGATVGLMVGT 73 (85)
Q Consensus 56 Mr~RV~aQg~tV~~lvg~ 73 (85)
.|||++.=.+.+...++.
T Consensus 28 ~RWRiiL~v~svct~v~A 45 (125)
T PF09771_consen 28 TRWRIILVVVSVCTAVGA 45 (125)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 466666655555544443
No 76
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=20.67 E-value=1.6e+02 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=19.8
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHHH
Q 034748 18 KKRVRNPLVPIGALMTAGVLTAGLIS 43 (85)
Q Consensus 18 rK~~~~plvpig~~at~~~L~~Gl~~ 43 (85)
+=+.++|++. |+++++.+++.|...
T Consensus 205 ~~A~~~~~lY-Gl~av~iAi~~Gw~a 229 (236)
T PF09608_consen 205 NLAHEQPLLY-GLLAVLIAIFAGWLA 229 (236)
T ss_pred HHHHHCCcHH-HHHHHHHHHHHHHHH
Confidence 3457788887 899999998888765
No 77
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.22 E-value=2.3e+02 Score=20.20 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=13.1
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 034748 24 PLVPIGALMTAGVLTAGLIS 43 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~ 43 (85)
+++.++++.++|+.++.+..
T Consensus 7 ~W~~a~igLvvGi~IG~li~ 26 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666777777766655554
No 78
>PRK10663 cytochrome o ubiquinol oxidase subunit III; Provisional
Probab=20.19 E-value=3.5e+02 Score=19.58 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHH------HhhcCChhHH
Q 034748 25 LVPIGALMTAGVLTAGLI------SFRQGNSHLG 52 (85)
Q Consensus 25 lvpig~~at~~~L~~Gl~------~~r~G~~~~S 52 (85)
-+|++.+.|+.-+..++. +.|+||.+..
T Consensus 65 ~lp~~~~nT~iLl~SS~~~~~A~~a~~~~~~~~~ 98 (204)
T PRK10663 65 ELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQV 98 (204)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 356666777666665544 3456665443
Done!