Query 034748
Match_columns 85
No_of_seqs 121 out of 376
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 09:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034748.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034748hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 63.4 4.7 0.00034 22.3 3.7 20 25-44 23-42 (56)
2 d1kqfb2 f.23.22.1 (B:246-290) 32.5 22 0.0016 18.6 3.0 25 23-47 10-35 (45)
3 d1ppjd2 f.23.11.1 (D:196-241) 32.5 13 0.00095 19.5 2.0 25 57-81 6-31 (46)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 30.2 43 0.0031 18.6 4.7 20 24-43 6-25 (158)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 29.8 10 0.00076 18.9 1.2 13 31-43 16-28 (34)
6 d3cx5d2 f.23.11.1 (D:261-307) 26.0 20 0.0014 18.9 2.0 23 57-79 6-29 (47)
7 d1xmec1 f.23.9.1 (C:2-34) Bact 16.5 60 0.0043 15.7 2.5 12 32-43 16-27 (33)
8 d1jb0m_ f.23.19.1 (M:) Subunit 14.9 69 0.0051 15.3 2.6 15 31-45 10-24 (31)
9 d2e9xd2 d.344.1.3 (D:166-223) 14.4 5.3 0.00039 22.3 -2.2 15 51-65 36-50 (58)
10 d1fx8a_ f.19.1.1 (A:) Glycerol 8.4 2.1E+02 0.015 18.2 4.0 30 22-51 170-201 (254)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=63.43 E-value=4.7 Score=22.34 Aligned_cols=20 Identities=15% Similarity=0.499 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 034748 25 LVPIGALMTAGVLTAGLISF 44 (85)
Q Consensus 25 lvpig~~at~~~L~~Gl~~~ 44 (85)
|.-++.++.+|.++.|+..|
T Consensus 23 f~~ia~v~~iG~~i~G~IGf 42 (56)
T d1rh5b_ 23 YLAVAKVTALGISLLGIIGY 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33467777777787777664
No 2
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=32.53 E-value=22 Score=18.58 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=18.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHh-hcC
Q 034748 23 NPLVPIGALMTAGVLTAGLISF-RQG 47 (85)
Q Consensus 23 ~plvpig~~at~~~L~~Gl~~~-r~G 47 (85)
.++=|+|+++..++.+.|++.+ +-|
T Consensus 10 gv~Kpl~~~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 10 GALKPLAAAGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhhheeC
Confidence 4566888888888888888885 433
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.51 E-value=13 Score=19.47 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhccCc
Q 034748 57 RARVVVQGATVGLM-VGTAYYYGDTP 81 (85)
Q Consensus 57 r~RV~aQg~tV~~l-vg~~~~~~~~~ 81 (85)
|-|.++..+.++.+ .+.+|+..+..
T Consensus 6 RK~mG~Kv~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 6 RKRMGLKMLLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777654 55566654433
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=30.21 E-value=43 Score=18.65 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 034748 24 PLVPIGALMTAGVLTAGLIS 43 (85)
Q Consensus 24 plvpig~~at~~~L~~Gl~~ 43 (85)
-+|.|+++++++++..=.|.
T Consensus 6 LlVViaIIgILaaia~P~~~ 25 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQ 25 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777766655
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.77 E-value=10 Score=18.92 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 034748 31 LMTAGVLTAGLIS 43 (85)
Q Consensus 31 ~at~~~L~~Gl~~ 43 (85)
+++++.+++|.|+
T Consensus 16 i~~vG~FfYGsYs 28 (34)
T d2axtj1 16 IVIVGLFFYGAYA 28 (34)
T ss_dssp HHHHHHHHHHTTT
T ss_pred Hhheeeeeeeeec
Confidence 3344444454443
No 6
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.04 E-value=20 Score=18.93 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcc
Q 034748 57 RARVVVQGATVGLM-VGTAYYYGD 79 (85)
Q Consensus 57 r~RV~aQg~tV~~l-vg~~~~~~~ 79 (85)
|-|.++..+.+..+ .+.++|+.+
T Consensus 6 RK~mg~K~~~i~s~l~~~~~y~KR 29 (47)
T d3cx5d2 6 RKRLGLKTVIILSSLYLLSIWVKK 29 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888654 455555543
No 7
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=16.49 E-value=60 Score=15.65 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 034748 32 MTAGVLTAGLIS 43 (85)
Q Consensus 32 at~~~L~~Gl~~ 43 (85)
.|..++..|.+.
T Consensus 16 l~ilvfw~gv~a 27 (33)
T d1xmec1 16 LTILVFWLGVYA 27 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455566665
No 8
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=14.90 E-value=69 Score=15.26 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhh
Q 034748 31 LMTAGVLTAGLISFR 45 (85)
Q Consensus 31 ~at~~~L~~Gl~~~r 45 (85)
++.+++|+-|+..||
T Consensus 10 valvial~pg~lafr 24 (31)
T d1jb0m_ 10 VALVIALLPAVLAFR 24 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666677766665
No 9
>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.39 E-value=5.3 Score=22.34 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 034748 51 LGQLLMRARVVVQGA 65 (85)
Q Consensus 51 ~SnklMr~RV~aQg~ 65 (85)
-||++||+|.+|-.+
T Consensus 36 GSQHimrY~~ia~LV 50 (58)
T d2e9xd2 36 GSQHLIRYKTIAPLV 50 (58)
T ss_dssp TCEEEEEHHHHHHHH
T ss_pred CceeEEeehhHHHHH
Confidence 478888888776544
No 10
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=8.35 E-value=2.1e+02 Score=18.22 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=18.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHhhcC--ChhH
Q 034748 22 RNPLVPIGALMTAGVLTAGLISFRQG--NSHL 51 (85)
Q Consensus 22 ~~plvpig~~at~~~L~~Gl~~~r~G--~~~~ 51 (85)
.+.+.|+.+..++.++......+-++ |+.+
T Consensus 170 ~~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR 201 (254)
T d1fx8a_ 170 RGPLAPLLIGLLIAVIGASMGPLTGFAMNPAR 201 (254)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred cccccchHHHHHHHHHHhhcccccccccChHH
Confidence 45577777776666666655555555 5444
Done!