BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034751
         (85 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IS15|GEFI_DICDI Ras guanine nucleotide exchange factor I OS=Dictyostelium
           discoideum GN=gefI PE=2 SV=1
          Length = 824

 Score = 32.0 bits (71), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 19  ITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIF 53
           I GF+ F +RK IYGSIS+ QS    K    +P++
Sbjct: 756 IQGFINFGKRKLIYGSISNVQSFQNTKYNL-QPVY 789


>sp|Q8IS14|GEFJ_DICDI Ras guanine nucleotide exchange factor J OS=Dictyostelium
           discoideum GN=gefJ PE=2 SV=1
          Length = 812

 Score = 32.0 bits (71), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 19  ITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIF 53
           I GF+ F +RK IYGSIS+ QS    K    +P++
Sbjct: 744 IQGFINFGKRKLIYGSISNVQSFQNAKYNL-QPVY 777


>sp|P50388|BGAL_SULSH Beta-galactosidase OS=Sulfolobus shibatae GN=bglY PE=3 SV=1
          Length = 489

 Score = 29.3 bits (64), Expect = 7.3,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 21  GFVVFE-QRKCIYGSISDH-QSHDEIKSQTREPIFARKTRSEFAHLWNKAVD 70
           G++ FE  RK +Y  I  H +++D IKS +++PI      S F  L  K V+
Sbjct: 225 GYLSFELSRKAMYNIIQAHARAYDGIKSVSKKPIGIIYANSSFQPLTEKDVE 276


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,687,373
Number of Sequences: 539616
Number of extensions: 848205
Number of successful extensions: 1871
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1869
Number of HSP's gapped (non-prelim): 3
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)