Query 034751
Match_columns 85
No_of_seqs 18 out of 20
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 06:04:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11830 DUF3350: Domain of un 81.3 1.3 2.9E-05 28.3 2.0 20 54-73 24-43 (56)
2 COG5642 Uncharacterized conser 61.0 5.3 0.00012 29.8 1.5 15 59-74 88-102 (149)
3 PF12732 YtxH: YtxH-like prote 59.4 8.7 0.00019 23.8 2.1 16 10-25 2-17 (74)
4 PF14986 DUF4514: Domain of un 45.5 3.4 7.3E-05 26.9 -1.5 32 10-41 24-55 (61)
5 PF13515 FUSC_2: Fusaric acid 44.3 16 0.00036 23.0 1.6 19 6-24 36-54 (128)
6 PRK11638 lipopolysaccharide bi 37.2 27 0.00059 27.9 2.2 20 10-29 321-340 (342)
7 KOG2645 Type I phosphodiestera 37.0 22 0.00048 29.6 1.7 18 67-84 204-221 (418)
8 PF14477 Mso1_C: Membrane-pola 36.6 23 0.00049 22.8 1.3 19 56-74 11-29 (57)
9 PF05240 APOBEC_C: APOBEC-like 34.3 21 0.00045 22.3 0.9 15 58-72 23-37 (55)
10 PF00884 Sulfatase: Sulfatase; 32.2 35 0.00077 23.6 1.8 19 67-85 218-236 (308)
11 PF14629 ORC4_C: Origin recogn 29.5 40 0.00086 23.8 1.8 17 58-74 21-37 (203)
12 PRK13253 citrate lyase subunit 26.0 57 0.0012 22.1 2.0 20 57-76 37-56 (92)
13 TIGR00228 ruvC crossover junct 24.4 15 0.00033 26.7 -1.1 40 29-69 43-84 (156)
No 1
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=81.30 E-value=1.3 Score=28.30 Aligned_cols=20 Identities=40% Similarity=0.818 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHHHhhH
Q 034751 54 ARKTRSEFAHLWNKAVDQTF 73 (85)
Q Consensus 54 gk~~r~e~a~~WNk~VD~tf 73 (85)
.|+++.|+..+|.||+.|+.
T Consensus 24 ~krt~eelR~LWrkAI~QqI 43 (56)
T PF11830_consen 24 KKRTREELRELWRKAIHQQI 43 (56)
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 78999999999999999874
No 2
>COG5642 Uncharacterized conserved protein [Function unknown]
Probab=60.98 E-value=5.3 Score=29.79 Aligned_cols=15 Identities=53% Similarity=1.148 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHhhHH
Q 034751 59 SEFAHLWNKAVDQTFG 74 (85)
Q Consensus 59 ~e~a~~WNk~VD~tfG 74 (85)
.-|+++||+||| +||
T Consensus 88 arfarV~~~AvD-vfg 102 (149)
T COG5642 88 ARFARVWDLAVD-VFG 102 (149)
T ss_pred HHHHHHHHHHHH-Hhc
Confidence 459999999999 344
No 3
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=59.36 E-value=8.7 Score=23.76 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=10.3
Q ss_pred HHHHHHhhhhhceeEE
Q 034751 10 LLGFALGSAITGFVVF 25 (85)
Q Consensus 10 LLG~aLGs~~~g~~V~ 25 (85)
|+|+.+|.+.++++.+
T Consensus 2 ~~g~l~Ga~~Ga~~gl 17 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGL 17 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777665544
No 4
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=45.51 E-value=3.4 Score=26.88 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHHHHHhhhhhceeEEEeehhhhhcccCCCCC
Q 034751 10 LLGFALGSAITGFVVFEQRKCIYGSISDHQSH 41 (85)
Q Consensus 10 LLG~aLGs~~~g~~V~~qRr~Iy~Sisd~~~~ 41 (85)
++|++||.++.+||.---=-.|-+-+.|.+|+
T Consensus 24 ~IGtalGvaisAgFLaLKicmIrkhlfD~dss 55 (61)
T PF14986_consen 24 IIGTALGVAISAGFLALKICMIRKHLFDNDSS 55 (61)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHhhccCchh
Confidence 68999999998887543333455577777654
No 5
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=44.31 E-value=16 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhhceeE
Q 034751 6 AQERLLGFALGSAITGFVV 24 (85)
Q Consensus 6 aQERLLG~aLGs~~~g~~V 24 (85)
+-+|++|+.+|.+++-.+.
T Consensus 36 ~~~Ri~Gt~iG~~~~~~~~ 54 (128)
T PF13515_consen 36 AIQRILGTLIGVVLGLLLL 54 (128)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4689999999998855443
No 6
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=37.21 E-value=27 Score=27.91 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.1
Q ss_pred HHHHHHhhhhhceeEEEeeh
Q 034751 10 LLGFALGSAITGFVVFEQRK 29 (85)
Q Consensus 10 LLG~aLGs~~~g~~V~~qRr 29 (85)
+||+.+|.+++.|+|+--|+
T Consensus 321 il~~llG~~lg~~~vL~r~~ 340 (342)
T PRK11638 321 IMWGAVGALVGAGVALTRRR 340 (342)
T ss_pred HHHHHHHHHHHheeeEeecC
Confidence 68999999999999987553
No 7
>KOG2645 consensus Type I phosphodiesterase/nucleotide pyrophosphatase [General function prediction only]
Probab=37.05 E-value=22 Score=29.65 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=16.5
Q ss_pred HHHHhhHHHHHHhhccCC
Q 034751 67 KAVDQTFGPVIESFSSRG 84 (85)
Q Consensus 67 k~VD~tfG~lV~~LssR~ 84 (85)
+.||.+||.|++-|+.|+
T Consensus 204 ~~vD~~i~~L~~~Lk~r~ 221 (418)
T KOG2645|consen 204 KEVDDFIGYLIKGLKDRN 221 (418)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 579999999999999986
No 8
>PF14477 Mso1_C: Membrane-polarising domain of Mso1
Probab=36.56 E-value=23 Score=22.77 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHhhHH
Q 034751 56 KTRSEFAHLWNKAVDQTFG 74 (85)
Q Consensus 56 ~~r~e~a~~WNk~VD~tfG 74 (85)
|..+++..+|||.-|+.|.
T Consensus 11 rsssrlqd~yn~srqqs~~ 29 (57)
T PF14477_consen 11 RSSSRLQDMYNSSRQQSFP 29 (57)
T ss_pred ccHHHHHHHHhhhhhcccc
Confidence 7889999999999999874
No 9
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=34.29 E-value=21 Score=22.34 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHhh
Q 034751 58 RSEFAHLWNKAVDQT 72 (85)
Q Consensus 58 r~e~a~~WNk~VD~t 72 (85)
-.||.|-|++=||.-
T Consensus 23 ~~eF~~CW~nFV~~~ 37 (55)
T PF05240_consen 23 YSEFQYCWENFVDNQ 37 (55)
T ss_dssp HHHHHHHHHHCB--T
T ss_pred cHHHHHHHHHHhcCC
Confidence 479999999999853
No 10
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=32.24 E-value=35 Score=23.58 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.0
Q ss_pred HHHHhhHHHHHHhhccCCC
Q 034751 67 KAVDQTFGPVIESFSSRGW 85 (85)
Q Consensus 67 k~VD~tfG~lV~~LssR~w 85 (85)
+.+|+-+|.++.+|.++|+
T Consensus 218 ~~~D~~l~~~~~~l~~~~~ 236 (308)
T PF00884_consen 218 AYVDDQLGRFIEYLKEQGL 236 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhhhhhcCC
Confidence 4689999999999977763
No 11
>PF14629 ORC4_C: Origin recognition complex (ORC) subunit 4 C-terminus
Probab=29.48 E-value=40 Score=23.78 Aligned_cols=17 Identities=18% Similarity=0.636 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHhhHH
Q 034751 58 RSEFAHLWNKAVDQTFG 74 (85)
Q Consensus 58 r~e~a~~WNk~VD~tfG 74 (85)
..++...||+.||+.+.
T Consensus 21 ~~~~~~~WN~~I~~l~~ 37 (203)
T PF14629_consen 21 DPSYVKQWNKSIESLLK 37 (203)
T ss_pred chHHHHHHHHHHHHHHc
Confidence 45788999999998664
No 12
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=26.03 E-value=57 Score=22.08 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHhhHHHH
Q 034751 57 TRSEFAHLWNKAVDQTFGPV 76 (85)
Q Consensus 57 ~r~e~a~~WNk~VD~tfG~l 76 (85)
...+|.+.|.+.|+++|-++
T Consensus 37 V~~~Fg~~i~~vv~~~l~~~ 56 (92)
T PRK13253 37 VEKQFGDQIRAVILETLAKL 56 (92)
T ss_pred HHhhhHHHHHHHHHHHHHhc
Confidence 44589999999999999876
No 13
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=24.36 E-value=15 Score=26.70 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=23.9
Q ss_pred hhhhhcccCC-C-CCccccccccccchhhhhhhHHHHHHHHHH
Q 034751 29 KCIYGSISDH-Q-SHDEIKSQTREPIFARKTRSEFAHLWNKAV 69 (85)
Q Consensus 29 r~Iy~Sisd~-~-~~~~~~~~~~~p~fgk~~r~e~a~~WNk~V 69 (85)
..||+.+.+- + -+|. .---|+.||+|+..+-+.--+..+|
T Consensus 43 ~~I~~~l~~~i~~y~P~-~~aiE~~F~~~N~~sa~~lg~arGv 84 (156)
T TIGR00228 43 KLIYAGVTEIITQFQPN-YFAIEQVFMAKNADSALKLGQARGV 84 (156)
T ss_pred HHHHHHHHHHHHHhCCC-EEEEeHHhhccCHHHHHHHHHHHHH
Confidence 4556555552 1 2222 2223568899999988877776655
Done!