BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034752
(85 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/72 (98%), Positives = 72/72 (100%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRV 72
IDDETYEEIVRV
Sbjct: 61 IDDETYEEIVRV 72
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/73 (95%), Positives = 71/73 (97%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/73 (95%), Positives = 71/73 (97%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRAT 73
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/73 (95%), Positives = 71/73 (97%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE
Sbjct: 1 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/73 (94%), Positives = 71/73 (97%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/73 (94%), Positives = 71/73 (97%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVE
Sbjct: 1 MAAEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M++EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE++TTVE
Sbjct: 1 MSTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/73 (94%), Positives = 70/73 (95%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A+EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI
Sbjct: 3 AAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 62
Query: 62 DDETYEEIVRVCC 74
DDETYEEIVRV
Sbjct: 63 DDETYEEIVRVSS 75
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 71/73 (97%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV+TTVE
Sbjct: 1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIV+
Sbjct: 61 IDDETYEEIVKTS 73
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/73 (93%), Positives = 69/73 (94%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTTVE
Sbjct: 1 MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTS 73
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/72 (93%), Positives = 69/72 (95%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEI
Sbjct: 3 GTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 62
Query: 62 DDETYEEIVRVC 73
DDETYEEIVR
Sbjct: 63 DDETYEEIVRTT 74
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/72 (94%), Positives = 69/72 (95%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A+EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI
Sbjct: 3 AAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 62
Query: 62 DDETYEEIVRVC 73
DDETYEEIVR
Sbjct: 63 DDETYEEIVRTT 74
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 70/73 (95%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VT++E
Sbjct: 5 MASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSIE 64
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 65 IDDETYEEIVRTS 77
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 70/73 (95%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG+VEEV T+VE
Sbjct: 1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTS 73
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Brachypodium distachyon]
Length = 98
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/74 (93%), Positives = 70/74 (94%), Gaps = 1/74 (1%)
Query: 1 MAS-EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
MAS EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTV
Sbjct: 1 MASAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 60
Query: 60 EIDDETYEEIVRVC 73
EIDDETYEEIVR
Sbjct: 61 EIDDETYEEIVRTT 74
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum
aestivum]
Length = 98
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/74 (91%), Positives = 70/74 (94%), Gaps = 1/74 (1%)
Query: 1 MAS-EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
MAS +EE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTV
Sbjct: 1 MASADEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 60
Query: 60 EIDDETYEEIVRVC 73
EIDDETYEEIVR
Sbjct: 61 EIDDETYEEIVRTT 74
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 68/73 (93%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|449446417|ref|XP_004140968.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Cucumis sativus]
Length = 101
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/77 (88%), Positives = 69/77 (89%), Gaps = 4/77 (5%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVK----LRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA+EEES VKEPLDLIRLSLDERIYVK LRSDRELRGKLHAYDQHLNMILGDVEE V
Sbjct: 1 MATEEESTVKEPLDLIRLSLDERIYVKSLXPLRSDRELRGKLHAYDQHLNMILGDVEESV 60
Query: 57 TTVEIDDETYEEIVRVC 73
TTVEIDDETYEEIVR
Sbjct: 61 TTVEIDDETYEEIVRTS 77
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/70 (92%), Positives = 67/70 (95%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+EE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDD
Sbjct: 28 DEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDD 87
Query: 64 ETYEEIVRVC 73
ETYEEIVR
Sbjct: 88 ETYEEIVRTT 97
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 68/73 (93%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ EE++ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1 MSGEEDATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEV+TTVE
Sbjct: 1 MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 69/73 (94%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEV+TT+E
Sbjct: 1 MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIVR
Sbjct: 61 IDDETYEEIVRTT 73
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica
Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/65 (95%), Positives = 63/65 (96%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEE
Sbjct: 16 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEE 75
Query: 69 IVRVC 73
IVR
Sbjct: 76 IVRTT 80
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 66/71 (92%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EE++ VKEPLDLIRLSLDER+YVKLR DRE+RGKLHAYDQHLNMILGDVEE +TTVEID
Sbjct: 2 AEEDTTVKEPLDLIRLSLDERVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVEID 61
Query: 63 DETYEEIVRVC 73
DETYEEIV+
Sbjct: 62 DETYEEIVKTT 72
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 67/70 (95%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEEV+TT+EIDD
Sbjct: 3 EEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDD 62
Query: 64 ETYEEIVRVC 73
ETYEEIVR
Sbjct: 63 ETYEEIVRTT 72
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 66/71 (92%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EE++ VKEPLDLIRLSLDER+YVKLR +RE+RGKLHAYDQHLNMILGDVEE +TTVEID
Sbjct: 2 AEEDTTVKEPLDLIRLSLDERVYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEID 61
Query: 63 DETYEEIVRVC 73
DETYEEI++
Sbjct: 62 DETYEEIIKTT 72
>gi|357126031|ref|XP_003564692.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Brachypodium distachyon]
Length = 114
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 69/88 (78%), Gaps = 16/88 (18%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH----------------AYDQHL 45
++EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLH AYDQHL
Sbjct: 3 SAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVSASSYFCLLILNLLMAYDQHL 62
Query: 46 NMILGDVEEVVTTVEIDDETYEEIVRVC 73
NMILGDVEE+VTTVEIDDETYEEIVR
Sbjct: 63 NMILGDVEEIVTTVEIDDETYEEIVRTT 90
>gi|326516156|dbj|BAJ88101.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 123
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/95 (69%), Positives = 70/95 (73%), Gaps = 22/95 (23%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH--------------------- 39
MASEE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLH
Sbjct: 5 MASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHDLNGKIISASKYTEEDTLNVL 64
Query: 40 -AYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC 73
AYDQHLNMILGDVEE+VT++EIDDETYEEIVR
Sbjct: 65 PAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTS 99
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 66/70 (94%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EE++ VKEPLDLIRLSLDERIYVKLR DRELRG+LHAYDQHLNMILG+VEE +T++EID
Sbjct: 2 AEEDATVKEPLDLIRLSLDERIYVKLRGDRELRGRLHAYDQHLNMILGEVEETITSIEID 61
Query: 63 DETYEEIVRV 72
DETYEEI++
Sbjct: 62 DETYEEIIKT 71
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/63 (92%), Positives = 62/63 (98%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEEESAVKEPL+LI LSLDERIYVKLRSDRELRGKLHAYDQHLN++LGDVEE+VTTVE
Sbjct: 1 MASEEESAVKEPLNLIWLSLDERIYVKLRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVE 60
Query: 61 IDD 63
IDD
Sbjct: 61 IDD 63
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%), Gaps = 1/73 (1%)
Query: 1 MASEEESA-VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
MA + E+A VKEPLDLIRLSLDERIYVKLR +RELRG+LHAYDQHLNMILG+VEE +TTV
Sbjct: 1 MADDGETATVKEPLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTV 60
Query: 60 EIDDETYEEIVRV 72
EIDDETYEEI++
Sbjct: 61 EIDDETYEEIIKT 73
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%), Gaps = 1/73 (1%)
Query: 1 MASEEESA-VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
MA + E+A VKEPLDLIRLSLDERIYVKLR +RELRG+LHAYDQHLNMILG+VEE +TTV
Sbjct: 1 MADDGETATVKEPLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTV 60
Query: 60 EIDDETYEEIVRV 72
EIDDETYEEI++
Sbjct: 61 EIDDETYEEIIKT 73
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 66/71 (92%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+EEE+ V+EPLDLIRLSLDE++YVKL+ +RELRGKLHAYDQHLNMILGDVEE VT+VEID
Sbjct: 2 AEEENTVREPLDLIRLSLDEKVYVKLKGERELRGKLHAYDQHLNMILGDVEETVTSVEID 61
Query: 63 DETYEEIVRVC 73
+ET+EEI++
Sbjct: 62 EETFEEIIKAS 72
>gi|344241612|gb|EGV97715.1| U6 snRNA-associated Sm-like protein LSm3 [Cricetulus griseus]
Length = 103
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 63/67 (94%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 6 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 65
Query: 67 EEIVRVC 73
EEI +V
Sbjct: 66 EEIYKVS 72
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 68/78 (87%), Gaps = 1/78 (1%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+ + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+E
Sbjct: 4 QTAVVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEE 63
Query: 65 TYEEIVRVCC-NLKILLL 81
TYEEI + N+ +L +
Sbjct: 64 TYEEIYKTTKRNIPMLFV 81
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 99
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 72/85 (84%), Gaps = 3/85 (3%)
Query: 1 MASEEESA--VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MA ++++ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT
Sbjct: 1 MADQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTT 60
Query: 59 VEIDDETYEEIVRVCC-NLKILLLN 82
+EID+ETYEEI + N+ +L +
Sbjct: 61 IEIDEETYEEIYKSTKRNIPMLFVQ 85
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Danio rerio]
Length = 102
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 11 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 70
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 71 EEIYKSTKRNIPMLFV 86
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 71/87 (81%), Gaps = 6/87 (6%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA E E + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE
Sbjct: 1 MADEAEQQPSTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 56 VTTVEIDDETYEEIVRVCC-NLKILLL 81
VTTVEID+ETYEE+ + N+ +L +
Sbjct: 61 VTTVEIDEETYEELYKSTKRNIPMLFV 87
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans
morsitans]
Length = 102
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 66/78 (84%), Gaps = 5/78 (6%)
Query: 1 MASEEESA-----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA EEE A VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE
Sbjct: 1 MAGEEEQAQVVLSVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 60
Query: 56 VTTVEIDDETYEEIVRVC 73
VTTVEID+ETYEE+ +
Sbjct: 61 VTTVEIDEETYEEVYKTT 78
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 62/65 (95%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVKLR+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKLRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVR 71
EEI +
Sbjct: 72 EEIYK 76
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 6 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 65
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 66 EEIYKSTKRNIPMLFV 81
>gi|302792292|ref|XP_002977912.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
gi|302810500|ref|XP_002986941.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300145346|gb|EFJ12023.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300154615|gb|EFJ21250.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
Length = 97
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 69/73 (94%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MASEE+ AVKEPLDLIRLSLDERIYVKLR+DRELRGKLHAYDQHLNMILG+VEEVVTT E
Sbjct: 1 MASEEDGAVKEPLDLIRLSLDERIYVKLRADRELRGKLHAYDQHLNMILGEVEEVVTTTE 60
Query: 61 IDDETYEEIVRVC 73
IDDETYEEIV+
Sbjct: 61 IDDETYEEIVKTT 73
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus
gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Pan troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo
abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Loxodonta africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan
paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio
anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 66/77 (85%), Gaps = 4/77 (5%)
Query: 1 MASEEESA----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA + E A VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+VEE V
Sbjct: 1 MADDAEQAPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETV 60
Query: 57 TTVEIDDETYEEIVRVC 73
TT+EID+ETYEE+ R
Sbjct: 61 TTIEIDEETYEEVYRTT 77
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 68/80 (85%), Gaps = 1/80 (1%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+ + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID
Sbjct: 10 QQSSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEID 69
Query: 63 DETYEEIVRVCC-NLKILLL 81
+ETYEE+ + N+ +L +
Sbjct: 70 EETYEELYKSTKRNIPMLFV 89
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 10 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 69
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 70 EEIYKSTKRNIPMLFV 85
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 5 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 64
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 65 EEIYKSTKRNIPMLFV 80
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 63/70 (90%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
S+ + V+EPLDLIRLSLDERIYVK+R+DREL+G+LHAYDQHLNMILGDVEE VT VEI
Sbjct: 8 PSQPANTVEEPLDLIRLSLDERIYVKMRNDRELKGRLHAYDQHLNMILGDVEETVTAVEI 67
Query: 62 DDETYEEIVR 71
D+ETYEEI +
Sbjct: 68 DEETYEEIYK 77
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EE+ + N+ +L +
Sbjct: 72 EELYKSTKRNIPMLFV 87
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Takifugu rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EE+ + N+ +L +
Sbjct: 72 EELYKSTKRNIPMLFV 87
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like
protein LSm3-like [Meleagris gallopavo]
Length = 108
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 62/65 (95%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 18 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 77
Query: 67 EEIVR 71
EEI +
Sbjct: 78 EEIYK 82
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 66/76 (86%), Gaps = 3/76 (3%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA+EEE VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VT
Sbjct: 1 MATEEEQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 60
Query: 58 TVEIDDETYEEIVRVC 73
TVEID+ETYEE+ +
Sbjct: 61 TVEIDEETYEEVYKTT 76
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Megachile rotundata]
Length = 103
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 5/86 (5%)
Query: 1 MASEEESA----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA E E VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+ EE V
Sbjct: 1 MADEAEQVPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETV 60
Query: 57 TTVEIDDETYEEIVRVCC-NLKILLL 81
TTVEID+ETYEE+ R N+ +L +
Sbjct: 61 TTVEIDEETYEEVYRTTKRNISMLFV 86
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDLIRLSLDERIYVK+R++RELRGKLHAYDQHLNM+LGD EE +TTVEID+ETYE
Sbjct: 12 TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYE 71
Query: 68 EIVRVCC-NLKILLL 81
E+ R N+ +L +
Sbjct: 72 EVYRTNKRNIPMLFV 86
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 5/86 (5%)
Query: 1 MASEEESA----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA E E VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+ EE V
Sbjct: 1 MADETEQVPAINVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETV 60
Query: 57 TTVEIDDETYEEIVRVCC-NLKILLL 81
TTVEID+ETYEE+ R N+ +L +
Sbjct: 61 TTVEIDEETYEEVYRTTKRNISMLFV 86
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Nomascus leucogenys]
Length = 102
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 66/76 (86%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+E D+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIETDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 66/79 (83%), Gaps = 6/79 (7%)
Query: 1 MASEEES------AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA+EEE VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE
Sbjct: 1 MATEEEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
Query: 55 VVTTVEIDDETYEEIVRVC 73
VTTVEID+ETYEE+ +
Sbjct: 61 TVTTVEIDEETYEEVYKTT 79
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 59/66 (89%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEP DLIRLSLDERIYVK+R++RELRGKLHAYDQHLNM+LGD EE +TTVEID+ETYE
Sbjct: 12 TVKEPWDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYE 71
Query: 68 EIVRVC 73
E+ R
Sbjct: 72 EVYRTT 77
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+L+AYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 66/76 (86%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLD IRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDPIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 60/66 (90%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LGD EE VTTVEID+ETYE
Sbjct: 12 TVKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVEIDEETYE 71
Query: 68 EIVRVC 73
E+ +
Sbjct: 72 EVYKTT 77
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+ EE VTTVEID+ETYEE
Sbjct: 6 VKEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEE 65
Query: 69 IVRVCC-NLKILLL 81
+ R N+ +L +
Sbjct: 66 VYRTTKRNISMLFV 79
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 63/67 (94%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+ES VKEPLDL+RLSLDER+YVKLR+DRELRGKLH+YDQHLNM+LG+VEE+ T E+D+E
Sbjct: 22 DESTVKEPLDLVRLSLDERVYVKLRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVDEE 81
Query: 65 TYEEIVR 71
TYEEI++
Sbjct: 82 TYEEIIK 88
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+L+AYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 65/76 (85%), Gaps = 3/76 (3%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA EE+ VKEPLDLIRLSLDE+IYVK+R++RELRG+LHA+DQHLNM+LGD EE VT
Sbjct: 1 MAEEEQMPIIPVKEPLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 60
Query: 58 TVEIDDETYEEIVRVC 73
TVEID+ETYEE+ +
Sbjct: 61 TVEIDEETYEEVYKTS 76
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 63/65 (96%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+AV+EPLDL+RLSLDE+IYVK+R++RELRG+LHAYDQHLNMILGDVEE VT+VEID+ETY
Sbjct: 57 TAVEEPLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETY 116
Query: 67 EEIVR 71
EE+ +
Sbjct: 117 EEVYK 121
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member
[Tribolium castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDL+RLSLDERIYVK+R+DRE+RG+LHAYDQH+NMIL D EE +TTVEID+ETYE
Sbjct: 12 TVKEPLDLVRLSLDERIYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETYE 71
Query: 68 EIVRVCC-NLKILLL 81
E+ R N+ +L +
Sbjct: 72 EVYRTTKRNIPMLFV 86
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 65/76 (85%), Gaps = 3/76 (3%)
Query: 1 MASEEE---SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA EE+ VKEPLDLIRLSLDE+IYVK+R++RELRG+LHA+DQHLNM+LGD EE VT
Sbjct: 1 MAEEEQLPIIPVKEPLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVT 60
Query: 58 TVEIDDETYEEIVRVC 73
TVEID+ETYEE+ +
Sbjct: 61 TVEIDEETYEEVYKTT 76
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 63/65 (96%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+AV+EPLDL+RLSLDE+IYVK+R++RELRG+LHAYDQHLNMILGDVEE VT+VEID+ETY
Sbjct: 11 TAVEEPLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETY 70
Query: 67 EEIVR 71
EE+ +
Sbjct: 71 EEVYK 75
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 67/75 (89%), Gaps = 2/75 (2%)
Query: 1 MASEEESA--VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+A+ EE++ V+EPLDL+RLSLDERI VK+R+DRELRG+LHAYDQHLNM+LGDVEE +TT
Sbjct: 4 VATNEETSNTVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETITT 63
Query: 59 VEIDDETYEEIVRVC 73
VEIDDET+EE+ +
Sbjct: 64 VEIDDETFEELYKTS 78
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 61/66 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMIL DVEE +TTVEID+ET+
Sbjct: 11 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVEIDEETF 70
Query: 67 EEIVRV 72
EE+ R
Sbjct: 71 EELFRT 76
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 64/76 (84%), Gaps = 3/76 (3%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA EE+ VKEPLDLIRLSLDE+IYVK+R +RELRG+LHA+DQHLNM+LGD EE VT
Sbjct: 1 MAEEEQMPIIPVKEPLDLIRLSLDEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVT 60
Query: 58 TVEIDDETYEEIVRVC 73
TVEID+ETYEE+ +
Sbjct: 61 TVEIDEETYEEVYKTT 76
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 61/66 (92%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+VKEPLDLIRLSLDER++VK+R++R LRGKLHAYDQHLNM+LGDVEE VTTVEID+ETYE
Sbjct: 10 SVKEPLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYE 69
Query: 68 EIVRVC 73
EI +
Sbjct: 70 EIYKTT 75
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 61/65 (93%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S V+EPLDLIRLSLD+RIYVKLR +RELRGKLHAYDQHLNM+LGDVEE VTTVE+D+ET
Sbjct: 13 STVEEPLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETD 72
Query: 67 EEIVR 71
EEI++
Sbjct: 73 EEIIK 77
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 62/68 (91%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+ + + V+EP+DL+RLSLDERI+VKLRS+RELRG+LHAYDQHLNM+LGDVEE+ T VEI
Sbjct: 8 SKQHSTTVEEPMDLVRLSLDERIFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVEI 67
Query: 62 DDETYEEI 69
DDETYEE+
Sbjct: 68 DDETYEEV 75
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 64/79 (81%), Gaps = 6/79 (7%)
Query: 1 MASEEES------AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA E E VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE
Sbjct: 1 MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
Query: 55 VVTTVEIDDETYEEIVRVC 73
VTTVEID+ETYEE+ +
Sbjct: 61 TVTTVEIDEETYEEVYKTA 79
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M +EE V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE
Sbjct: 1 MDRKEEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60
Query: 61 IDDETYEEIVR-VCCNLKILLL 81
D+ET EEI+R + N+K+L +
Sbjct: 61 KDEETDEEIIRNIKRNIKMLFI 82
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 64/79 (81%), Gaps = 6/79 (7%)
Query: 1 MASEEES------AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA E E VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE
Sbjct: 1 MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
Query: 55 VVTTVEIDDETYEEIVRVC 73
VTTVEID+ETYEE+ +
Sbjct: 61 TVTTVEIDEETYEEVYKTA 79
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 64/79 (81%), Gaps = 6/79 (7%)
Query: 1 MASEEES------AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA E E VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE
Sbjct: 1 MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
Query: 55 VVTTVEIDDETYEEIVRVC 73
VTTVEID+ETYEE+ +
Sbjct: 61 TVTTVEIDEETYEEVYKTA 79
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 60/65 (92%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYE
Sbjct: 167 PVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYE 226
Query: 68 EIVRV 72
E+ +
Sbjct: 227 EVYKT 231
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 60/65 (92%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYE
Sbjct: 78 PVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYE 137
Query: 68 EIVRV 72
E+ +
Sbjct: 138 EVYKT 142
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M EE V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE
Sbjct: 1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60
Query: 61 IDDETYEEIVR-VCCNLKILLL 81
D+ET EEI+R + N+K+L +
Sbjct: 61 KDEETDEEIIRNIKRNIKMLFV 82
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
VKEPLDL+RLSLDE+IYVK+R+DREL+G+LHAYDQH+NMIL DVEE +TTVEID+ETYE
Sbjct: 12 TVKEPLDLVRLSLDEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVEIDEETYE 71
Query: 68 EIVRVCC-NLKILLL 81
E+ + N+ +L +
Sbjct: 72 EVYKSTKRNIPMLFV 86
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 61/66 (92%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
++ V+EPLDL+RLSLDERI+VKLR++REL G+LHA+DQHLNMILGDVEE VT VEIDDET
Sbjct: 13 QALVEEPLDLLRLSLDERIFVKLRNERELTGRLHAFDQHLNMILGDVEETVTNVEIDDET 72
Query: 66 YEEIVR 71
YEEI R
Sbjct: 73 YEEIYR 78
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 70/83 (84%), Gaps = 4/83 (4%)
Query: 3 SEEESAVK---EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
E+++ V+ EPLDLIRLSLDERIYVK+R++RELRG+L+AYDQHLNMILGDVEE VTTV
Sbjct: 5 QEQQAPVQNAEEPLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEETVTTV 64
Query: 60 EIDDETYEEIVRVCC-NLKILLL 81
EID+ET+EEI + N+ +L +
Sbjct: 65 EIDEETFEEIYKSTKRNIPMLFV 87
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 60/65 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
V+EPLDLIRLSLDER+YVK+R++RELRG+LHAYDQHLNM+LG+VEE VT VEID+ETY
Sbjct: 14 QTVEEPLDLIRLSLDERVYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTAVEIDEETY 73
Query: 67 EEIVR 71
EEI +
Sbjct: 74 EEIYK 78
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 102
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 66/76 (86%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+AV++PLDLIRLSL++RIYVK+R+DRELR +LHAYDQHLNMI GDVEE VTT+EID+ETY
Sbjct: 12 NAVEKPLDLIRLSLNKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIEIDEETY 71
Query: 67 EEIVRVCC-NLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIYKSTKRNIPMLFV 87
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 64/79 (81%), Gaps = 6/79 (7%)
Query: 1 MASEEES------AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA E E VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLN++LGD EE
Sbjct: 1 MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNIVLGDAEE 60
Query: 55 VVTTVEIDDETYEEIVRVC 73
VTTVEID+ETYEE+ +
Sbjct: 61 TVTTVEIDEETYEEVYKTA 79
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 60/63 (95%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLI+LSL+ERIYVK+R++RELRGKLHA+DQHLNM+LGDVEE++ VEID+ETYEE
Sbjct: 13 VKEPLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIINIVEIDEETYEE 72
Query: 69 IVR 71
I R
Sbjct: 73 IYR 75
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 60/63 (95%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
VKEPLDLI+LSL+ERIYVK+R++RELRGKLHA+DQHLNM+LGDVEE++ VEID+ETYEE
Sbjct: 40 VKEPLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIINIVEIDEETYEE 99
Query: 69 IVR 71
I R
Sbjct: 100 IYR 102
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 65/74 (87%), Gaps = 3/74 (4%)
Query: 3 SEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+E +SA + EPLD++RLSLDERIYVK+R++RELRG+LHAYDQHLNM+LGDVEE VT+V
Sbjct: 5 AENQSAPCVMNEPLDMVRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDVEETVTSV 64
Query: 60 EIDDETYEEIVRVC 73
EID+ET+EE+ +
Sbjct: 65 EIDEETFEEVYKTS 78
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 66/75 (88%), Gaps = 1/75 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
V+EPLDLIRLSLDERIYVK+R++REL+G+L+AYDQHLNMILG+VEE VT++EID+ETYE
Sbjct: 15 TVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVEETVTSIEIDEETYE 74
Query: 68 EIVRVCC-NLKILLL 81
E+ R N+ +L +
Sbjct: 75 EVYRTTKRNIPMLFV 89
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 65/72 (90%), Gaps = 1/72 (1%)
Query: 1 MASEEES-AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
MA E+ + V+EPLDL++ SLDE++YVK+R+DRELRGKLHAYDQHLNM+LGDVEE++TTV
Sbjct: 1 MADEDATHTVEEPLDLMKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEEIITTV 60
Query: 60 EIDDETYEEIVR 71
++D+ET EEI +
Sbjct: 61 DVDEETMEEIFK 72
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 59/66 (89%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+KEP+DLIRLS+DERIYVK+R DRELRG+LHA+DQHLNM+LG+ EE +TT+E+D+ET+E
Sbjct: 17 TIKEPVDLIRLSVDERIYVKMRHDRELRGRLHAFDQHLNMVLGEAEETITTIEVDEETFE 76
Query: 68 EIVRVC 73
E+ +
Sbjct: 77 EVYKTT 82
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
V+EPLDLIRLSLDERIYVK+R++REL+G+L+AYDQHLNMILG+V E VT++EID+ETYEE
Sbjct: 16 VEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVAETVTSIEIDEETYEE 75
Query: 69 IVRVCC-NLKILLL 81
+ R N+ +L +
Sbjct: 76 VYRTTKRNIPMLFV 89
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 66/75 (88%), Gaps = 1/75 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
V+EPLDLIRLSLDERIYVK+R++REL+G+L+AYDQ+LNMILG+VEE VT++EID+ETYE
Sbjct: 15 TVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQYLNMILGEVEETVTSIEIDEETYE 74
Query: 68 EIVRVCC-NLKILLL 81
E+ R N+ +L +
Sbjct: 75 EVYRTTKRNIPMLFV 89
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 64/77 (83%), Gaps = 8/77 (10%)
Query: 1 MASEEESA--------VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
MA+E++ A V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL V
Sbjct: 1 MATEQQQAPVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQV 60
Query: 53 EEVVTTVEIDDETYEEI 69
EE VTTVE+D+E +EE+
Sbjct: 61 EETVTTVELDEENFEEM 77
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC
30864]
Length = 106
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 56/62 (90%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDLI+LSLDERI VK+R DRELRG+LHAYDQHLNMIL DVEE VTTVEID+ET+EE+V+
Sbjct: 21 PLDLIKLSLDERILVKMRGDRELRGRLHAYDQHLNMILSDVEETVTTVEIDEETFEEMVK 80
Query: 72 VC 73
Sbjct: 81 TT 82
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 67/81 (82%), Gaps = 1/81 (1%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+ +EE +++EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL +VEE + VE
Sbjct: 4 SKKEEGSIEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSNVEETIKVVEK 63
Query: 62 DDETYEEIVR-VCCNLKILLL 81
D+ET EEIV+ + N+ +L +
Sbjct: 64 DEETDEEIVKNIKRNIDMLFV 84
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 65/78 (83%), Gaps = 1/78 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERI VK+R+D+ELRG+LHAYDQ+ NMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVRVCCNLKILLLNFK 84
EEI + I +L F+
Sbjct: 72 EEIYK-SMKRNIPMLFFR 88
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M +E ++EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE
Sbjct: 1 MEKRDEGTIEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIRVVE 60
Query: 61 IDDETYEEIVR-VCCNLKILLL 81
D+ET EEIV+ + +K+L +
Sbjct: 61 KDEETDEEIVKSIKRKIKMLFV 82
>gi|324567919|gb|ADY49901.1| U6 snRNA-associated Sm-like protein LSm3, partial [Ascaris suum]
Length = 76
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 8/76 (10%)
Query: 1 MASEEESA--------VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
MA+E++ A V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL V
Sbjct: 1 MATEQQQAPVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQV 60
Query: 53 EEVVTTVEIDDETYEE 68
EE VTTVE+D+E +EE
Sbjct: 61 EETVTTVELDEENFEE 76
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 60/65 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERI VK+R+D+ELRG+LHAYDQ+ NMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETY 71
Query: 67 EEIVR 71
EEI +
Sbjct: 72 EEIYK 76
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 58/63 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL VEE VTTVE+D+E +
Sbjct: 13 TGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENF 72
Query: 67 EEI 69
EE+
Sbjct: 73 EEM 75
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/63 (77%), Positives = 57/63 (90%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EPLDLIRLS+DER+YVK R DRELRGKLH YDQHLNMILGDVEE VT+ EID+ET E+
Sbjct: 1 MEEPLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTSTEIDEETDEQ 60
Query: 69 IVR 71
IV+
Sbjct: 61 IVK 63
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 58/63 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL VEE VTTVE+D+E +
Sbjct: 46 TGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENF 105
Query: 67 EEI 69
EE+
Sbjct: 106 EEM 108
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 58/63 (92%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLDLIRLSLDERIYVK+R+DRE+RG+LHA+DQHLNMIL VEE VTTVE+D+E +
Sbjct: 46 TGVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENF 105
Query: 67 EEI 69
EE+
Sbjct: 106 EEM 108
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MASE++ + V+EPLDL+RLSLDE++YVK+R+DRELRG+L A+DQHLNM+L DVEE
Sbjct: 1 MASEKKEVVLPATVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEET 60
Query: 56 VTTVEIDDETYEEIVR 71
+TT E+D++T+EEI R
Sbjct: 61 ITTREVDEDTFEEIYR 76
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 61/71 (85%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+E+ V+EPLDLIRLSLDE+IYVK++ +RELRG LHA+D HLNMILG+VEE VTT+EID
Sbjct: 12 AEQPVLVEEPLDLIRLSLDEKIYVKMKRNRELRGILHAFDSHLNMILGNVEETVTTLEID 71
Query: 63 DETYEEIVRVC 73
+ETYEE+ +
Sbjct: 72 EETYEEVYKTT 82
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 60/70 (85%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E+ V+EPLDLIRLSLDE+IYVK++ +RELRG LHA+D HLNMILG+VEE VTT+EID+
Sbjct: 11 EQPVLVEEPLDLIRLSLDEKIYVKMKRNRELRGVLHAFDSHLNMILGNVEETVTTLEIDE 70
Query: 64 ETYEEIVRVC 73
ETYEE+ +
Sbjct: 71 ETYEEVYKTT 80
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 60/73 (82%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+ S + AV+EPLDL+RLSLDER+YVKLR DREL G LHAYD HLNM+LG+VEE +T V+
Sbjct: 7 VPSTDVGAVEEPLDLVRLSLDERVYVKLRGDRELTGILHAYDGHLNMVLGEVEETITMVD 66
Query: 61 IDDETYEEIVRVC 73
+++ET EE++R
Sbjct: 67 VNEETLEEVIRTV 79
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MASE++ + V+EPLDL+RLSLDE++YVK+R+DRELRG+L A+DQHLNM+L +VEE
Sbjct: 1 MASEKKEVTLSATVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60
Query: 56 VTTVEIDDETYEEIVR 71
+TT E+D++T+EEI R
Sbjct: 61 ITTREVDEDTFEEIYR 76
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 58/65 (89%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EPLDL+RLSLDER+YVK+R+DREL G+LH +DQHLNMI+ +VEE VTT+E+D+ET+EE
Sbjct: 14 IEEPLDLVRLSLDERLYVKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLELDEETFEE 73
Query: 69 IVRVC 73
I R
Sbjct: 74 IYRTT 78
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 64/74 (86%), Gaps = 5/74 (6%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA+E++ + V+EPLDL+RLSLDER+YVK+R+DRELRG+L A+DQHLNM+L +VEE
Sbjct: 1 MATEKKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60
Query: 56 VTTVEIDDETYEEI 69
+TT E+D++T+EEI
Sbjct: 61 ITTREVDEDTFEEI 74
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 65/76 (85%), Gaps = 5/76 (6%)
Query: 1 MASEEE-----SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA+E++ + V+EP+DL+RLSLDER+YVK+R+DRE+RG+L A+DQHLNM+L +VEE
Sbjct: 1 MATEKKEVTLSATVEEPIDLLRLSLDERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEET 60
Query: 56 VTTVEIDDETYEEIVR 71
+TT E+D++T+EEI R
Sbjct: 61 ITTREVDEDTFEEIYR 76
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 53/55 (96%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
A+EE++AV+EPLDLIRL+LDE++YVKLR DRE RG+LHAYDQHLNMILGDVEEV+
Sbjct: 3 AAEEDAAVREPLDLIRLALDEKVYVKLRGDREARGRLHAYDQHLNMILGDVEEVI 57
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 56/65 (86%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S++ EPLDL++LS+ ERIYVK R DRELRG LHAYDQHLNM+L +VEE VT E+D+ETY
Sbjct: 2 SSIDEPLDLVKLSIGERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEETVTVQELDEETY 61
Query: 67 EEIVR 71
EEI++
Sbjct: 62 EEIIK 66
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 53/67 (79%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+V EP DLIRLS+ ER+YVKLR DRELRG LHAYD H+N+ILGDVEE + V+++DE+
Sbjct: 21 GSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESG 80
Query: 67 EEIVRVC 73
E VRV
Sbjct: 81 SETVRVV 87
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 72/87 (82%), Gaps = 6/87 (6%)
Query: 1 MASEEESA-----VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA E E++ V+EPLDLIRLSLDERIYVK+R++RELRG+LHAYDQHLNM+LG+VEE
Sbjct: 1 MADENETSAPVITVEEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEET 60
Query: 56 VTTVEIDDETYEEIVRVCC-NLKILLL 81
VTTVEID+ETYEE+ R N+ +L +
Sbjct: 61 VTTVEIDEETYEEVYRTTKRNIPMLFV 87
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
A +V EP DLIRLS+ ER+YVKLR DRELRG LHAYD H+N+ILGDVEE + V+I
Sbjct: 10 APAPVGSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDI 69
Query: 62 DDETYEEIVRVC 73
+DE E VRV
Sbjct: 70 NDENGHETVRVV 81
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago
hordei]
Length = 109
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 54/67 (80%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+V EP DLIRLS+ ER+YVKLR DRELRG LHAYD H+N+ILGDVEE + V+I++ET
Sbjct: 20 GSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETG 79
Query: 67 EEIVRVC 73
+E VRV
Sbjct: 80 KETVRVV 86
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 56/68 (82%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+ V+EPLDLIRLSLDER+ VK+R +R L G+LHAYDQHLNM+L DV E +TT EID+E+
Sbjct: 2 DKGVEEPLDLIRLSLDERVTVKMRGNRVLSGQLHAYDQHLNMVLSDVVETITTSEIDEES 61
Query: 66 YEEIVRVC 73
YEEI++
Sbjct: 62 YEEIIKTT 69
>gi|343427129|emb|CBQ70657.1| probable LSM3-U6 snRNA-associated Sm-like protein [Sporisorium
reilianum SRZ2]
Length = 113
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 53/67 (79%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+V EP DLIRLS+ ER+YVKLR DRELRG LHAYD H+N+ILGDVEE + V+I++ET
Sbjct: 24 GSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETG 83
Query: 67 EEIVRVC 73
E VRV
Sbjct: 84 AETVRVV 90
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+++ EPLDLI+LS+ ERIYVK R DRELRG L AYDQHLNM+L DVEE +T E+D ETY
Sbjct: 2 ASIDEPLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETY 61
Query: 67 EEIVR 71
EE+++
Sbjct: 62 EELIK 66
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+++ EPLDLI+LS+ ERIYVK R DRELRG L AYDQHLNM+L DVEE +T E+D ETY
Sbjct: 2 ASIDEPLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETY 61
Query: 67 EEIVR 71
EE+++
Sbjct: 62 EELIK 66
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 55/68 (80%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V EPLDLIRLSLDE++Y+KL+ DRELRG LHAYDQHLNM+LG+VEE + ++ID ET
Sbjct: 4 TTVLEPLDLIRLSLDEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIDIDKETN 63
Query: 67 EEIVRVCC 74
E+ ++
Sbjct: 64 EQQMKSTT 71
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 50/59 (84%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+EE EPLDL+RLSLDERIYVK+R DRELRGKLHAYDQH+NM+LG+VEE +T V +
Sbjct: 12 AEETVQTTEPLDLVRLSLDERIYVKMRGDRELRGKLHAYDQHMNMVLGEVEESITVVHL 70
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 52/64 (81%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
++ V+EP DLIRLSL ER+++KLR DRE+RG LHAYDQH+NMILG+VEE T V++D+
Sbjct: 7 DAGVQEPFDLIRLSLSERVFIKLRGDREIRGVLHAYDQHMNMILGEVEETQTIVDLDESA 66
Query: 66 YEEI 69
+ +
Sbjct: 67 AQPV 70
>gi|428178094|gb|EKX46971.1| hypothetical protein GUITHDRAFT_70214 [Guillardia theta CCMP2712]
Length = 97
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 63/73 (86%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA + + V EPLDL+RLSLDERIYVK+R DRELRGKLHAYDQHLNM+LG+VEEVVT VE
Sbjct: 1 MAGKGGTNVDEPLDLLRLSLDERIYVKMRGDRELRGKLHAYDQHLNMVLGEVEEVVTVVE 60
Query: 61 IDDETYEEIVRVC 73
D++T+EE V++
Sbjct: 61 YDEDTFEEHVKMT 73
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 55/66 (83%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+V+EPLDL+RLSL+E++ VK+R DR+L G LHAYDQH+NM+L +V E + TV++DDET E
Sbjct: 5 SVEEPLDLVRLSLEEKVLVKMRGDRQLEGTLHAYDQHMNMVLSNVVETLATVDVDDETGE 64
Query: 68 EIVRVC 73
E+V+
Sbjct: 65 ELVKTA 70
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+ ++V EPLDL+RLSLDER+YVKLR DRE++G+LHAYD HLNM+L DVEE V V+I DE
Sbjct: 9 DNTSVLEPLDLVRLSLDERVYVKLRGDREIKGRLHAYDSHLNMVLSDVEETVYIVDI-DE 67
Query: 65 TYEEI 69
T E I
Sbjct: 68 TEEHI 72
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 52/65 (80%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
+++PLDLI L+LDE I VKLR DRELRGKL A+DQH+N++L DVEE VE+DDET EE
Sbjct: 2 IQQPLDLILLALDEEILVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDDETGEE 61
Query: 69 IVRVC 73
+++
Sbjct: 62 LIKAV 66
>gi|308811052|ref|XP_003082834.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
gi|116054712|emb|CAL56789.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
Length = 487
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/48 (79%), Positives = 46/48 (95%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 50
+E+++AV+EPLDLIRL+LDER+YVKLR DRE RG+LHAYDQHLNMILG
Sbjct: 394 AEDDAAVREPLDLIRLALDERVYVKLRGDREARGRLHAYDQHLNMILG 441
>gi|296423190|ref|XP_002841138.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637372|emb|CAZ85329.1| unnamed protein product [Tuber melanosporum]
Length = 95
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 53/62 (85%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+++ S ++EPLDL+RLSLDE+++VKLR DRELRG+LHAYD H N++LGDVEE + TV D
Sbjct: 4 ADDTSPIQEPLDLVRLSLDEQVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYTVGDD 63
Query: 63 DE 64
+E
Sbjct: 64 EE 65
>gi|116792190|gb|ABK26267.1| unknown [Picea sitchensis]
Length = 45
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 45/45 (100%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHL 45
MA+EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHL
Sbjct: 1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHL 45
>gi|449019835|dbj|BAM83237.1| U6 snRNA-associated Sm-like protein LSm3 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 55/66 (83%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+ ++EP++L+R++LDER++VKL+ DREL G LHAYDQHLN+I+ D EE + E+D+ET
Sbjct: 7 KGQLEEPVELLRIALDERVFVKLKGDRELVGTLHAYDQHLNLIISDAEETLQKAELDEET 66
Query: 66 YEEIVR 71
YE+IVR
Sbjct: 67 YEQIVR 72
>gi|19112539|ref|NP_595747.1| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720084|sp|Q9Y7M4.2|LSM3_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|6942158|emb|CAB42366.2| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe]
Length = 93
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LGD EE+VT + D+
Sbjct: 2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFD-DE 60
Query: 64 ET 65
ET
Sbjct: 61 ET 62
>gi|164657698|ref|XP_001729975.1| hypothetical protein MGL_2961 [Malassezia globosa CBS 7966]
gi|159103869|gb|EDP42761.1| hypothetical protein MGL_2961 [Malassezia globosa CBS 7966]
Length = 84
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 52/68 (76%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+ + EP DLIRLSL ER+ VKLR DRE+RG LHAYD H+N+ILGDVEE + +++ ++T
Sbjct: 5 STGIHEPFDLIRLSLSERVLVKLRGDREMRGILHAYDGHMNLILGDVEETIYDMQVSEDT 64
Query: 66 YEEIVRVC 73
E ++VC
Sbjct: 65 GAESIQVC 72
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A+KEPLDL+RLSL+E+I VKLR DREL G LHAYD H+N+ILG+V+E VT V++D T E
Sbjct: 4 AIKEPLDLVRLSLNEQIKVKLRGDRELIGVLHAYDSHMNLILGNVDEFVTVVDVDSTTLE 63
Query: 68 EIVR 71
R
Sbjct: 64 STTR 67
>gi|358374818|dbj|GAA91407.1| U6 small nuclear ribonucleoprotein [Aspergillus kawachii IFO
4308]
Length = 96
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRV 72
+EI+R
Sbjct: 69 QEILRT 74
>gi|350639679|gb|EHA28033.1| hypothetical protein ASPNIDRAFT_211308 [Aspergillus niger ATCC
1015]
Length = 723
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRV 72
+E +R
Sbjct: 69 QETLRT 74
>gi|67515531|ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gi|40746210|gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRV 72
+E +R
Sbjct: 69 QEHIRT 74
>gi|335309474|ref|XP_003361652.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Sus
scrofa]
Length = 98
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 53/65 (81%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V+EPLD IRLSL+ERI K+R+DRE +G+LHAYD HLN+ILGDVEE T++ + +T+
Sbjct: 12 NTVQEPLDRIRLSLEERIDAKMRNDREAQGRLHAYDPHLNVILGDVEETAATIDTEGKTH 71
Query: 67 EEIVR 71
EEI +
Sbjct: 72 EEISK 76
>gi|145249892|ref|XP_001401285.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS
513.88]
gi|134081970|emb|CAK46655.1| unnamed protein product [Aspergillus niger]
Length = 96
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRV 72
+E +R
Sbjct: 69 QETLRT 74
>gi|258567110|ref|XP_002584299.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905745|gb|EEP80146.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 135
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 57/75 (76%), Gaps = 4/75 (5%)
Query: 1 MASEEESAVK---EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA ++ A EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADGDDGAAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TVEIDDETYEEIVRV 72
VE +DE +EI++V
Sbjct: 61 MVE-EDENEQEIIKV 74
>gi|390981129|pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
gi|390981130|pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
gi|390981131|pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
gi|390981132|pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
gi|390981133|pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
gi|390981134|pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
gi|390981135|pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
gi|390981136|pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
gi|390981137|pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
gi|390981138|pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
gi|390981139|pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
gi|390981140|pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
gi|390981141|pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
gi|390981142|pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLN +LGD EE+VT + D+
Sbjct: 2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFD-DE 60
Query: 64 ET 65
ET
Sbjct: 61 ET 62
>gi|259489765|tpe|CBF90306.1| TPA: U6 small nuclear ribonucleoprotein (Lsm3), putative
(AFU_orthologue; AFUA_5G12570) [Aspergillus nidulans
FGSC A4]
Length = 96
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE
Sbjct: 10 SSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDENE 68
Query: 67 EEIVRV 72
+E +R
Sbjct: 69 QEHIRT 74
>gi|345571011|gb|EGX53826.1| hypothetical protein AOL_s00004g485 [Arthrobotrys oligospora ATCC
24927]
Length = 93
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 2/66 (3%)
Query: 1 MASEEE--SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MA E SAV EPLDL+RLSLDE ++VKLR DRELRG+LHAYD H N++LG+VEE +
Sbjct: 1 MADTENGTSAVAEPLDLVRLSLDEVVFVKLRGDRELRGRLHAYDSHCNLVLGEVEETIYV 60
Query: 59 VEIDDE 64
V+ DD+
Sbjct: 61 VDEDDD 66
>gi|302652112|ref|XP_003017916.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
gi|291181501|gb|EFE37271.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
Length = 193
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-EDEAGE 70
Query: 68 EIVRV 72
E ++V
Sbjct: 71 ETIKV 75
>gi|302497389|ref|XP_003010695.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
gi|291174238|gb|EFE30055.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
Length = 193
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-EDEAGE 70
Query: 68 EIVRV 72
E ++V
Sbjct: 71 ETIKV 75
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 47/51 (92%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
++EPLDLI+LS+DER+YVK R+DRELRGKLHA+DQHLNM+L DVEE +T+
Sbjct: 1 TMEEPLDLIKLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEETITS 51
>gi|298711111|emb|CBJ32339.1| U6 snRNA-associated Sm-like protein LSm3 [Ectocarpus siliculosus]
Length = 93
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 62/65 (95%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V+EPLDLIRLSLDERI+VK R +RELRGKLH+YDQHLNM+LGDVEE VTTVE+D++TY
Sbjct: 3 SSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTY 62
Query: 67 EEIVR 71
EEIVR
Sbjct: 63 EEIVR 67
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 49/60 (81%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EPLD++R+SLD+R+ +K R DRE+ GKLHAYD HLNM+LGDVEEV TTV D T +E
Sbjct: 7 LQEPLDIVRVSLDDRVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDPLTGDE 66
>gi|327356944|gb|EGE85801.1| GTP-binding protein AGP-1 [Ajellomyces dermatitidis ATCC 18188]
Length = 98
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE+
Sbjct: 10 APFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVE-EDESE 68
Query: 67 EEIVRV 72
+EI++
Sbjct: 69 QEIIKT 74
>gi|154283195|ref|XP_001542393.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410573|gb|EDN05961.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 98
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDL+RLSLDE ++VKLR DRELRG+LHAYD H N++LGDVEE + VE +DE+ +E++
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYIVE-EDESEQEVI 72
Query: 71 R 71
+
Sbjct: 73 K 73
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EPLD++R+SLDER+ +K R DRE+ GKLHAYD HLNM+LGDVEEV TTV D T +E
Sbjct: 7 LQEPLDIVRVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDE 66
>gi|378726255|gb|EHY52714.1| hypothetical protein HMPREF1120_00923 [Exophiala dermatitidis
NIH/UT8656]
Length = 104
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 50/61 (81%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
V EPLDL+RLSLDE ++V+LR DREL+G+LHAYD H N++LG+VEE + T+E DDE E
Sbjct: 12 VSEPLDLVRLSLDEIVFVRLRGDRELKGRLHAYDSHCNLVLGEVEETIYTIEEDDEGEET 71
Query: 69 I 69
+
Sbjct: 72 V 72
>gi|326472596|gb|EGD96605.1| GTP-binding protein [Trichophyton tonsurans CBS 112818]
Length = 779
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE ++E E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-ENEAGE 70
Query: 68 EIVR 71
E ++
Sbjct: 71 ETIK 74
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ V EPLDL+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +D
Sbjct: 11 APVNEPLDLVRLCLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE-EDANE 69
Query: 67 EEIVR 71
EE+VR
Sbjct: 70 EEVVR 74
>gi|296809782|ref|XP_002845229.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
gi|238842617|gb|EEQ32279.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
Length = 109
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-EDEAGE 70
Query: 68 EIVRV 72
E V+
Sbjct: 71 ETVKT 75
>gi|226294169|gb|EEH49589.1| GTP-binding protein AGP-1 [Paracoccidioides brasiliensis Pb18]
Length = 576
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 52/71 (73%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE D+ E I
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESERETIK 73
Query: 71 RVCCNLKILLL 81
+ ++L L
Sbjct: 74 TIKKQEEMLFL 84
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
S ++EP DLIRLSL ER++VKLR DRE+ G LHAYD H+N+IL DVEE + V+ D
Sbjct: 3 PSASGIQEPFDLIRLSLSERVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDA 62
Query: 64 ETYEEIVRVC 73
+ +V +
Sbjct: 63 PNGQGVVNIA 72
>gi|225561720|gb|EEH10000.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus G186AR]
gi|240275325|gb|EER38839.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H143]
gi|325091160|gb|EGC44470.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H88]
Length = 98
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE+ +E++
Sbjct: 14 EPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVE-EDESEQEVI 72
Query: 71 R 71
+
Sbjct: 73 K 73
>gi|315042007|ref|XP_003170380.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|327298847|ref|XP_003234117.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
gi|311345414|gb|EFR04617.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|326464295|gb|EGD89748.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
Length = 100
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-EDEAGE 70
Query: 68 EIVRV 72
E ++
Sbjct: 71 ETIKT 75
>gi|342321540|gb|EGU13473.1| Hypothetical Protein RTG_00195 [Rhodotorula glutinis ATCC 204091]
Length = 97
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
+ EP DLIR+SL ER++VKLR DRELRG LHAYD H+NMIL +VEE + V+ D+ + +
Sbjct: 6 IAEPFDLIRVSLSERVFVKLRGDRELRGVLHAYDGHMNMILSEVEETIYVVDADEASGDN 65
Query: 69 IVR 71
+VR
Sbjct: 66 VVR 68
>gi|392333626|ref|XP_003752950.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Rattus norvegicus]
gi|392353940|ref|XP_003751639.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Rattus norvegicus]
Length = 177
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ +E LDL+ ++L+E+I +K R+DREL G+LH YDQHLNMILGD EE V +EID+ETY
Sbjct: 12 NTAEERLDLLTINLEEQICMKTRNDRELSGRLHVYDQHLNMILGDAEETVMMIEIDEETY 71
Query: 67 EEIVRVC-CNLKILLL 81
EEI + N+ +L +
Sbjct: 72 EEIDKSTKXNIPMLFI 87
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 121
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+ S V+EP DLIRLSL+ER++VKLR DREL G LHAYD H+NMI+ DVEE + V++
Sbjct: 2 AAPTSGVQEPFDLIRLSLNERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEETIMIVDV 60
>gi|295670537|ref|XP_002795816.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284901|gb|EEH40467.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 99
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE +DE+
Sbjct: 10 APFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVE-EDESE 68
Query: 67 EEIVRV 72
E+++
Sbjct: 69 REMIKT 74
>gi|326483593|gb|EGE07603.1| hypothetical protein TEQG_06517 [Trichophyton equinum CBS 127.97]
Length = 100
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+ EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + VE ++E E
Sbjct: 12 SFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVE-ENEAGE 70
Query: 68 EIVRV 72
E ++
Sbjct: 71 ETIKT 75
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 3/62 (4%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADSEDTGGPSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TV 59
V
Sbjct: 61 VV 62
>gi|342872477|gb|EGU74840.1| hypothetical protein FOXB_14644 [Fusarium oxysporum Fo5176]
Length = 179
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + TV
Sbjct: 4 AGEEPHHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTV 61
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 3/62 (4%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDAGGPSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TV 59
V
Sbjct: 61 VV 62
>gi|121713870|ref|XP_001274546.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
gi|119402699|gb|EAW13120.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
Length = 74
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 3/62 (4%)
Query: 1 MASEEE---SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E+ S+V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDAGASSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TV 59
V
Sbjct: 61 VV 62
>gi|440637312|gb|ELR07231.1| hypothetical protein GMDG_02458 [Geomyces destructans 20631-21]
Length = 98
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 49/63 (77%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ + EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDV E V V+ DDE
Sbjct: 10 APIDEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVVETVYVVDEDDEDG 69
Query: 67 EEI 69
E +
Sbjct: 70 ETL 72
>gi|46111709|ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
Length = 795
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + TV
Sbjct: 4 AGEEPHHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTV 61
>gi|358382874|gb|EHK20544.1| hypothetical protein TRIVIDRAFT_90246 [Trichoderma virens Gv29-8]
Length = 97
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 45/57 (78%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EE S V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LGDVEE + V
Sbjct: 5 GEESSHVAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAV 61
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD- 63
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+I+ DVEE + V+ D
Sbjct: 4 SSSGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSV 63
Query: 64 ETYEEIVRVC 73
T + +++V
Sbjct: 64 PTGQGVLQVA 73
>gi|242777144|ref|XP_002478974.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722593|gb|EED22011.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 96
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 46/54 (85%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+++V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + V
Sbjct: 8 DASVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 61
>gi|400599588|gb|EJP67285.1| U6 snRNA-associated Sm-like protein LSm3 [Beauveria bassiana
ARSEF 2860]
Length = 95
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 49/62 (79%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
++ S V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + VE D
Sbjct: 5 ADGSSHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYGVEED 64
Query: 63 DE 64
DE
Sbjct: 65 DE 66
>gi|212533023|ref|XP_002146668.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
gi|210072032|gb|EEA26121.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
Length = 96
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 46/54 (85%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+++V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE + V
Sbjct: 8 DTSVAEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 61
>gi|408389243|gb|EKJ68711.1| hypothetical protein FPSE_11107 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + TV
Sbjct: 4 AGEEPHHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTV 61
>gi|336364678|gb|EGN93033.1| hypothetical protein SERLA73DRAFT_146187 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386725|gb|EGO27871.1| hypothetical protein SERLADRAFT_383548 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+ ++EP DLIRLSL ER+YVKLR DRE+ G LHAYD H+N+IL DVEE + V++D
Sbjct: 6 TGIQEPFDLIRLSLSERVYVKLRGDREVTGILHAYDGHMNLILSDVEETIMIVDVD 61
>gi|432110929|gb|ELK34403.1| U6 snRNA-associated Sm-like protein LSm3 [Myotis davidii]
Length = 70
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 47/55 (85%), Gaps = 1/55 (1%)
Query: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCC-NLKILLL 81
+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI + N+ +L +
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV 55
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune
H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+ S+++EP DLIRLSL ER++VKLR DR+L G LHAYD H+N+IL DVEE + V++ +
Sbjct: 2 DSTSSIQEPFDLIRLSLSERVFVKLRGDRQLEGVLHAYDGHMNLILSDVEETIMIVDVPE 61
Query: 64 ETYEE 68
E
Sbjct: 62 GAPES 66
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 47/58 (81%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A+EE + V EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LGDVEE + V
Sbjct: 4 AAEENTHVSEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYVV 61
>gi|70997292|ref|XP_753396.1| U6 small nuclear ribonucleoprotein (Lsm3) [Aspergillus fumigatus
Af293]
gi|66851032|gb|EAL91358.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus Af293]
gi|159126877|gb|EDP51993.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 48/62 (77%), Gaps = 3/62 (4%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDTGAGSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TV 59
V
Sbjct: 61 VV 62
>gi|444705548|gb|ELW46970.1| U6 snRNA-associated Sm-like protein LSm3 [Tupaia chinensis]
Length = 70
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 47/55 (85%), Gaps = 1/55 (1%)
Query: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCC-NLKILLL 81
+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI + N+ +L +
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV 55
>gi|367051210|ref|XP_003655984.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
gi|347003248|gb|AEO69648.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
Length = 98
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
SAV EPLDL+RL LDE + VKLR DREL+G+LHAYD H N++LGDVEE + V+ DD+
Sbjct: 9 SAVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVDEDDD 66
>gi|322711294|gb|EFZ02868.1| U6 snRNP-associated protein Lsm3 [Metarhizium anisopliae ARSEF
23]
Length = 85
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
++ V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LGDVEE + V+
Sbjct: 4 TGDDTGHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAVDE 63
Query: 62 DDET 65
D+ET
Sbjct: 64 DEET 67
>gi|119478785|ref|XP_001259441.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
gi|119407595|gb|EAW17544.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
Length = 94
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 3/62 (4%)
Query: 1 MASEEES---AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDTGAGSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIY 60
Query: 58 TV 59
V
Sbjct: 61 VV 62
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 3/67 (4%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E+S V EPLDL+RLSL+E ++VKLR DREL+G+LHAYD H N++LGDV E V
Sbjct: 1 MADVEDSGGNPVNEPLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVY 60
Query: 58 TVEIDDE 64
V+ +DE
Sbjct: 61 LVDEEDE 67
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%), Gaps = 3/67 (4%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E++ V EPLDL+RLSL+E ++VKLR DREL+G+LHAYD H N++LGDV E V
Sbjct: 1 MAESEDAGATPVNEPLDLVRLSLNEIVFVKLRGDRELQGRLHAYDSHCNLVLGDVSETVY 60
Query: 58 TVEIDDE 64
V+ +DE
Sbjct: 61 VVDEEDE 67
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 44/56 (78%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+I+ DVEE + V+ D
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTD 61
>gi|426198547|gb|EKV48473.1| hypothetical protein AGABI2DRAFT_203319 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 44/56 (78%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE V V+ +
Sbjct: 7 SGIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTE 62
>gi|238499899|ref|XP_002381184.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
gi|317150537|ref|XP_003190430.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus oryzae
RIB40]
gi|220692937|gb|EED49283.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
Length = 96
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%), Gaps = 3/62 (4%)
Query: 1 MASEEE---SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA E+ ++V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N+++GDVEE +
Sbjct: 1 MADTEDAGTTSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVMGDVEETIY 60
Query: 58 TV 59
V
Sbjct: 61 VV 62
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata
strain Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A+ EPLD+IRL+LDE IY+K ++ REL G+LHA+D+H NM+L DV E +TTV+ DD +
Sbjct: 6 ALHEPLDMIRLNLDEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKN 65
Query: 68 EIVRV 72
E +V
Sbjct: 66 ETTKV 70
>gi|409079690|gb|EKM80051.1| hypothetical protein AGABI1DRAFT_72874 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 93
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE V V D E+
Sbjct: 7 SGIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIV--DTESN 64
Query: 67 EEI 69
+ I
Sbjct: 65 QTI 67
>gi|171680906|ref|XP_001905397.1| hypothetical protein [Podospora anserina S mat+]
gi|170940411|emb|CAP65637.1| unnamed protein product [Podospora anserina S mat+]
Length = 97
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+EE +V EPLDL+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 5 AEEAPSVSEPLDLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETI 58
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+ +A++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+ D
Sbjct: 2 DTSAAIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQID 61
Query: 64 ETYE 67
E
Sbjct: 62 GAGE 65
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 43/54 (79%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVD 59
>gi|322700593|gb|EFY92347.1| U6 snRNP-associated protein Lsm3 [Metarhizium acridum CQMa 102]
Length = 90
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 49/64 (76%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
++ V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + V+
Sbjct: 4 TGDDTGHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDE 63
Query: 62 DDET 65
D+ET
Sbjct: 64 DEET 67
>gi|115387369|ref|XP_001211190.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195274|gb|EAU36974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 97
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%), Gaps = 4/60 (6%)
Query: 1 MASEEES----AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA E++ +V EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADTEDAGSAPSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETI 60
>gi|403417353|emb|CCM04053.1| predicted protein [Fibroporia radiculosa]
Length = 97
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 43/54 (79%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
S ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVD 59
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
++EP DLIRLSL ER+ VKLR DR+L G LHAYD H+NMIL DVEE V V+ E +
Sbjct: 7 IQEPFDLIRLSLSERVMVKLRGDRQLSGVLHAYDGHMNMILSDVEETVMIVDPVPEGVKP 66
Query: 69 IVRVC 73
+RV
Sbjct: 67 SIRVA 71
>gi|302891811|ref|XP_003044787.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
gi|256725712|gb|EEU39074.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
Length = 96
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EE V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + TV
Sbjct: 5 GEESHHVSEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTV 61
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
Length = 94
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 47/58 (81%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+ V EPLDL+RLSL+E ++VKLR DREL+G+LHAYD H N++LGDV E V V+ +DE
Sbjct: 10 NPVNEPLDLVRLSLNEVVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYVVDEEDE 67
>gi|358397340|gb|EHK46715.1| hypothetical protein TRIATDRAFT_299236 [Trichoderma atroviride
IMI 206040]
Length = 97
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EE S V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + V
Sbjct: 5 GEETSHVAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAV 61
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus
ND90Pr]
Length = 96
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+E+ EPLDL+RL +DE + VKLR DREL+G+LHAYD H N++LGDVEE + E DD
Sbjct: 2 DEKEETNEPLDLVRLCIDEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAEEDD 61
Query: 64 ETYEEIVRV 72
+ E VR
Sbjct: 62 DDQEPRVRT 70
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
EE+ EPLDL+RL +DE + VKLR DREL+G+LHAYD H N++LGDVEE + E +D
Sbjct: 2 EEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEED 61
Query: 64 ETYEEIVRV 72
+ E VR
Sbjct: 62 DDQEPRVRT 70
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+ +
Sbjct: 6 NGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDQPEGGP 65
Query: 67 EE 68
EE
Sbjct: 66 EE 67
>gi|443925698|gb|ELU44474.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 42/54 (77%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
AV+EP DLIRLSL ER+YVKLR DREL G LHAYD H+N+I+ DVEE + V
Sbjct: 7 SGAVQEPFDLIRLSLSERVYVKLRGDRELTGVLHAYDGHMNLIMSDVEESIMIV 60
>gi|300120504|emb|CBK20058.2| Like-Sm ribonucleoprotein, core [Blastocystis hominis]
Length = 458
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S+V +P DLIRLSLDE + +K R RE+RGKL AYDQHLNM++ + +E T V +D ET
Sbjct: 369 SSVSQPFDLIRLSLDEEVVIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVTVDPETN 428
Query: 67 EEIVR-VCCNLKILLL 81
E+ + V N + L L
Sbjct: 429 NEVKKNVVRNFEALYL 444
>gi|367026602|ref|XP_003662585.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
gi|347009854|gb|AEO57340.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
Length = 96
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 45/55 (81%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
A +E +AV EPLDL+RL LDE + VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 4 ARDEGNAVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGDVEETI 58
>gi|393216136|gb|EJD01627.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 96
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
++EP DLIRLSL+ER++VKLR DREL G LHAYD H+N+IL DVEE + V+
Sbjct: 7 GIQEPFDLIRLSLNERVFVKLRGDRELNGVLHAYDGHMNLILSDVEETIMLVD 59
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+E+ EPLDL+RL +DE + +KLR DREL+G+LHAYD H N++LGDVEE + E DD
Sbjct: 2 DEKEETNEPLDLVRLCIDEIVILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEDD 61
Query: 64 ETYEEIVRV 72
+ E VR
Sbjct: 62 DDQEPRVRT 70
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 42/54 (77%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+
Sbjct: 6 PGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVD 59
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 49/63 (77%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
++++PLD+IRL+LDE IY++ + RE+ G+LHAYD+H NMIL D +E +TT EI+ T
Sbjct: 5 GSLQQPLDMIRLNLDEVIYLRCKGGREIVGRLHAYDEHCNMILSDAKETITTAEIEPTTN 64
Query: 67 EEI 69
EEI
Sbjct: 65 EEI 67
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 97
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA V+EP DLIRLSL ER+ +KLR DR L G LHAYD H+NM+L DV E +T VE
Sbjct: 1 MADLSGDGVEEPFDLIRLSLSERVLIKLRGDRVLNGTLHAYDGHMNMVLSDVIETITVVE 60
Query: 61 ----IDDETYEEIVRVCCNL 76
DDE V+ C +
Sbjct: 61 PAANPDDEPIIRTVKRNCEM 80
>gi|395330396|gb|EJF62779.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 97
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 43/56 (76%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+ ++EP DLIRLSL ER++VKLR DREL G LHAYD H+N+IL DVEE + V+
Sbjct: 4 SSNGIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVD 59
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
++ V EPLDL+RLSL+E ++VKLR DREL G+LHAYD H N++LGDV E V + +DE
Sbjct: 9 DNPVSEPLDLVRLSLNETVFVKLRGDRELAGRLHAYDSHCNLVLGDVTETVYVWDDEDE 67
>gi|389629744|ref|XP_003712525.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|351644857|gb|EHA52718.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|440488450|gb|ELQ68177.1| hypothetical protein OOW_P131scaffold00266g63 [Magnaporthe oryzae
P131]
Length = 95
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA E+ EP L+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADSGEAQANEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQD 60
Query: 61 IDDETYEEIVRVCCNLKILLL 81
DDE+ E+ V L++L +
Sbjct: 61 EDDES--ELKTVSRKLEMLFV 79
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
S ++EP DLIRLSL ER++VKLR DRE+ G LHAYD H+N+IL DVEE + V+
Sbjct: 6 SGIQEPFDLIRLSLSERVFVKLRGDREVVGILHAYDGHMNLILSDVEETIMIVD 59
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
SA EPLDL+RL LDE +YVKLR DREL+G+LHAYD H N++LGDV E + V
Sbjct: 9 SAPAEPLDLVRLCLDEVVYVKLRGDRELKGRLHAYDSHCNLVLGDVVETIYVV 61
>gi|440474314|gb|ELQ43063.1| hypothetical protein OOU_Y34scaffold00174g28 [Magnaporthe oryzae
Y34]
Length = 78
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA E+ EP L+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADSGEAQANEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQD 60
Query: 61 IDDET 65
DDE+
Sbjct: 61 EDDES 65
>gi|156089511|ref|XP_001612162.1| LSM domain containing protein [Babesia bovis]
gi|154799416|gb|EDO08594.1| LSM domain containing protein [Babesia bovis]
Length = 89
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
KEP+D+IR++LDER+Y+K + RE+ G+LHAYD+H NM+L D E T+VE+D T +E+
Sbjct: 3 KEPMDVIRVNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEV 62
Query: 70 VRV 72
+
Sbjct: 63 TTI 65
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 5/75 (6%)
Query: 1 MASEEESA---VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
MA EE V EPLDL+RLSL+E ++VKLR DREL+G+LHAYD H N++LG+V E T
Sbjct: 1 MADTEEPGADPVNEPLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGEVTE--T 58
Query: 58 TVEIDDETYEEIVRV 72
++ +E E VR
Sbjct: 59 IYQVAEEAGGEDVRT 73
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 46/57 (80%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+V EPL++I+L LDE++YVKLR RE+ GKLHAYD H N++LGD E ++TV+ ++E
Sbjct: 117 SVSEPLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNE 173
>gi|429850300|gb|ELA25589.1| u6 small nuclear ribonucleoprotein [Colletotrichum
gloeosporioides Nara gc5]
Length = 96
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 45/54 (83%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+E S V+EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LG+VEE +
Sbjct: 5 GDETSHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETI 58
>gi|356534805|ref|XP_003535942.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 2 [Glycine max]
Length = 65
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 43/53 (81%), Gaps = 2/53 (3%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL--GD 51
MASEEESAVKEPL+LI LSLDERIYVKLRSDRELRGKLH + + + GD
Sbjct: 1 MASEEESAVKEPLNLIWLSLDERIYVKLRSDRELRGKLHTTKRTVPFLFVRGD 53
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
Length = 96
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 49/69 (71%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+E+ EPLDL+RL +DE + VKLR DREL+G+LHAYD H N++LGDVEE + + ++
Sbjct: 2 DEKEETNEPLDLVRLCIDEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVADEEE 61
Query: 64 ETYEEIVRV 72
E E VR
Sbjct: 62 EDLEPRVRT 70
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 46/57 (80%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+V EPL++I+L LDE++YVKLR RE+ GKLHAYD H N++LGD E ++TV+ ++E
Sbjct: 2 SVSEPLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNE 58
>gi|336260805|ref|XP_003345195.1| hypothetical protein SMAC_07871 [Sordaria macrospora k-hell]
gi|380088006|emb|CCC05133.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 97
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+ +V EP+DL+RL LDE + VKLR DREL+G+LHAYD H N++LG+VEE + V
Sbjct: 4 AVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVV 61
>gi|346320143|gb|EGX89744.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Cordyceps
militaris CM01]
Length = 96
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 45/57 (78%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
++ S V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + V
Sbjct: 5 ADGTSHVAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYGV 61
>gi|320587366|gb|EFW99846.1| u6 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 99
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%), Gaps = 2/58 (3%)
Query: 1 MASEEE--SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA E + + EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADEADDMAPAPEPLDLVKLLLDEPVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETI 58
>gi|261189603|ref|XP_002621212.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239591448|gb|EEQ74029.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239613021|gb|EEQ90008.1| LSM domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 113
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 16/80 (20%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH---------------AYDQHLNMILGD 51
+ EPLDL+RLSLDE ++VKLR DREL+G+LH AYD H N++LGD
Sbjct: 10 APFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHVSGSGIPAIVVDLRMAYDSHCNLVLGD 69
Query: 52 VEEVVTTVEIDDETYEEIVR 71
VEE + VE +DE+ +EI++
Sbjct: 70 VEETIYIVE-EDESEQEIIK 88
>gi|310789782|gb|EFQ25315.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
E+ + V+EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LG+VEE +
Sbjct: 5 GEDTTHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETI 58
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+ V+EP DL+RLSL ER++VKL+ +R L G LHAYD H+NMI+ DVEE + VE
Sbjct: 6 AQVQEPFDLVRLSLSERVFVKLKGERSLTGVLHAYDGHMNMIMSDVEETILMVE 59
>gi|209879574|ref|XP_002141227.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556833|gb|EEA06878.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 106
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
EP+DLIRLSLDE++ VK R DREL G L+AYD H+NM+LG+V+E + ID+ T EE
Sbjct: 16 EPIDLIRLSLDEKVNVKCRGDRELEGILYAYDPHMNMVLGNVKETSQKITIDEVTGEE 73
>gi|399216324|emb|CCF73012.1| unnamed protein product [Babesia microti strain RI]
Length = 93
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
E ++V++PLDLIRL+LDE +Y+K + +RE+ GKLHAYD+H N+IL D E +T + D
Sbjct: 2 ENVASVQQPLDLIRLTLDEYVYIKSKGNREITGKLHAYDEHCNIILEDAVETITVITEDP 61
Query: 64 ETYEEIVRV 72
ET E V
Sbjct: 62 ETGTESTSV 70
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 42/53 (79%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
EE+ EPLDL+RL +DE + VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 2 EEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETI 54
>gi|340520073|gb|EGR50310.1| predicted protein [Trichoderma reesei QM6a]
Length = 75
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 42/51 (82%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
V EPLDL+RL L+E ++VKLR DREL+GKLHAYD H N++LG+VEE + V
Sbjct: 1 VAEPLDLVRLLLNEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAV 51
>gi|85090627|ref|XP_958507.1| hypothetical protein NCU09512 [Neurospora crassa OR74A]
gi|28919876|gb|EAA29271.1| predicted protein [Neurospora crassa OR74A]
Length = 168
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+ +V EP+DL+RL LDE + VKLR DREL+G+LHAYD H N++LG+VEE + V
Sbjct: 4 AVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVV 61
>gi|380493327|emb|CCF33959.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
E+ + V+EPLDL++L LDE ++VKLR DREL+G+LHAYD H N++LG+VEE +
Sbjct: 5 GEDTTHVQEPLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETI 58
>gi|336469053|gb|EGO57215.1| hypothetical protein NEUTE1DRAFT_121723 [Neurospora tetrasperma
FGSC 2508]
Length = 168
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+ +V EP+DL+RL LDE + VKLR DREL+G+LHAYD H N++LG+VEE + V
Sbjct: 4 AVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVV 61
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 50/65 (76%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
++EPLD+IRL+LDE IY+K ++ REL G+L A+D+H NM+L +V E +TTVE+D+ +
Sbjct: 6 TLQEPLDMIRLNLDEVIYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVELDNNSKN 65
Query: 68 EIVRV 72
E ++
Sbjct: 66 ETTKL 70
>gi|350291326|gb|EGZ72540.1| hypothetical protein NEUTE2DRAFT_158467 [Neurospora tetrasperma
FGSC 2509]
Length = 163
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+ +V EP+DL+RL LDE + VKLR DREL+G+LHAYD H N++LG+VEE + V
Sbjct: 4 AVEDAGSVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVV 61
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA E EP L+RL LDE ++VKLR DREL+G+LHAYD H N++LGDVEE +
Sbjct: 1 MADSGEGQGNEPFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYMQD 60
Query: 61 IDDET 65
+DE
Sbjct: 61 EEDEA 65
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 43/55 (78%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
EPLDLIRLSLDE+++VK R +REL+G L+AYD H+NM+LG+VEE E +T
Sbjct: 6 EPLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDT 60
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
DLIRLSL ER+ +KLR DRE+ G LHAYD H+NM+L DV E +T VE+ + +E
Sbjct: 1 FDLIRLSLSERVLIKLRGDREVTGTLHAYDGHMNMVLSDVTESITIVEVPESPNQE 56
>gi|167375897|ref|XP_001733767.1| snrnp sm protein [Entamoeba dispar SAW760]
gi|165904941|gb|EDR30063.1| snrnp sm protein, putative [Entamoeba dispar SAW760]
Length = 99
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 10/70 (14%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
S +++ ++EP+DLI+LSLD+ I++KLR R+L+GKL A+DQHLN+IL DV
Sbjct: 21 SMQKTQIEEPIDLIKLSLDDNIFIKLRGGRKLKGKLRAFDQHLNIILTDV---------- 70
Query: 63 DETYEEIVRV 72
+ETY+E R
Sbjct: 71 NETYQEKTRT 80
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 49/65 (75%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
A +EPLD+IRL+LDE IY+K ++ REL G+LHA+D H NM+L +V E +TTV+ + T +
Sbjct: 6 AHQEPLDMIRLNLDEMIYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITTVDGEPNTNQ 65
Query: 68 EIVRV 72
+ +V
Sbjct: 66 QPNKV 70
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
+ EPLDL++LSL ER+++KLR DR L G LHAYD H+N++L VEE + V++ ++
Sbjct: 7 GTISEPLDLVKLSLGERVFIKLRGDRTLTGNLHAYDAHMNLVLSQVEENIHIVDVGEDGT 66
Query: 67 EEIVRV 72
R+
Sbjct: 67 AAPPRI 72
>gi|213407672|ref|XP_002174607.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
gi|212002654|gb|EEB08314.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
Length = 90
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 43/57 (75%), Gaps = 6/57 (10%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
E AV EPLDL+RL LDER++VKLR DREL G+LH NM+LGD EEV+T+VE
Sbjct: 2 ESTQAVAEPLDLVRLCLDERVHVKLRGDRELFGRLH------NMVLGDAEEVITSVE 52
>gi|406867312|gb|EKD20350.1| U6 snRNP-associated protein Lsm3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 97
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 41/52 (78%), Gaps = 2/52 (3%)
Query: 1 MASEEE--SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 50
MA E+ SA EPLDL+RL LDE ++VKLR DREL+G+LHAYD H N++LG
Sbjct: 1 MADNEDGVSAPAEPLDLVRLCLDEVVFVKLRGDRELKGRLHAYDSHCNLVLG 52
>gi|119174705|ref|XP_001239694.1| hypothetical protein CIMG_09315 [Coccidioides immitis RS]
Length = 108
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 1 MASEEESAVK---EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 50
MA E + EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LG
Sbjct: 1 MADEADGGAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLG 53
>gi|358255644|dbj|GAA57330.1| U6 snRNA-associated Sm-like protein LSm3 [Clonorchis sinensis]
Length = 50
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCC 74
+R +RELRG LHA+D HLNMILG+ EE VTT+EID+ET+EE+ +V
Sbjct: 1 MRHNRELRGTLHAFDSHLNMILGNAEETVTTLEIDEETFEEVYKVIS 47
>gi|303314473|ref|XP_003067245.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240106913|gb|EER25100.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037539|gb|EFW19476.1| U6 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869885|gb|EAS28419.2| U6 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 98
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 1 MASEEESAVK---EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 50
MA E + EPLDL+RLSLDE ++VKLR DREL+G+LHAYD H N++LG
Sbjct: 1 MADEADGGAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLG 53
>gi|440294421|gb|ELP87438.1| snrnp sm protein, putative [Entamoeba invadens IP1]
Length = 79
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 46/58 (79%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
+++ V+EP+DL++LSLDE + VKLR +R+L+GKL A+DQHLN++L +V E +V D
Sbjct: 2 QKTKVEEPIDLVKLSLDEVVLVKLRGNRQLKGKLRAFDQHLNLVLTEVTETYNSVSRD 59
>gi|50546547|ref|XP_500743.1| YALI0B11022p [Yarrowia lipolytica]
gi|49646609|emb|CAG82989.1| YALI0B11022p [Yarrowia lipolytica CLIB122]
Length = 94
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
M + S EPLDLI LSL+E ++VKLR REL G LHAYD H +M+LG+VEE V
Sbjct: 1 MTDVDTSGGSEPLDLIGLSLNENVFVKLRGGRELYGLLHAYDIHCSMVLGNVEETV 56
>gi|407038130|gb|EKE38950.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 78
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 44/51 (86%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+++ ++EP+DLI+LSLD+ +++KLR R+L+GKL A+DQHLN+IL +V E+
Sbjct: 2 QKTQIEEPIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNVSEI 52
>gi|238880144|gb|EEQ43782.1| hypothetical protein CAWG_02031 [Candida albicans WO-1]
Length = 96
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PLDLIR LDE + VKLR REL+GKL YD H NM+L D EE + T DD++
Sbjct: 14 PLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAEETIYTSNEDDDS 67
>gi|67484430|ref|XP_657435.1| U6 snRNA-associated Sm-like protein LSm3 [Entamoeba histolytica
HM-1:IMSS]
gi|56474688|gb|EAL52049.1| U6 snRNA-associated Sm-like protein LSm3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702203|gb|EMD42886.1| U6 snrnaassociated Sm family LSm3 protein [Entamoeba histolytica
KU27]
Length = 78
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 44/51 (86%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+++ ++EP+DLI+LSLD+ +++KLR R+L+GKL A+DQHLN+IL +V E+
Sbjct: 2 QKTQIEEPIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNVSEM 52
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC
50439]
Length = 92
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+ EP +L++LSLDERI VK R DR LRG+L AYD HLNM+L +VEEV+
Sbjct: 7 IDEPFELVKLSLDERIQVKCRGDRYLRGRLVAYDSHLNMVLSEVEEVI 54
>gi|156097859|ref|XP_001614962.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium vivax Sal-1]
gi|148803836|gb|EDL45235.1| U6 snRNA-associated Sm-like protein LSm3, putative [Plasmodium
vivax]
Length = 91
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV--TTVEIDDETY 66
++ PLD IRL+++E +++K + DRE+RGKL AYD HLNMIL + E + VE D+E+
Sbjct: 7 IQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVENDEESV 66
Query: 67 EEIVR 71
++I R
Sbjct: 67 KKIER 71
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
E+ ++PLDLIR LDE + VKLR REL+GKL YD H NM+L D +E + +++ + +
Sbjct: 7 EQREDQQPLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQEFIYSLDENSK 66
Query: 65 TYEEIVR 71
+ IV+
Sbjct: 67 IKDPIVK 73
>gi|221053504|ref|XP_002258126.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807959|emb|CAQ38663.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 91
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV--TTVEIDDETY 66
++ PLD IRL+++E +++K + DRE+RGKL AYD HLNMIL + E T +E D+E+
Sbjct: 7 IQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQTVMENDEESV 66
Query: 67 EEIVR 71
++I R
Sbjct: 67 KKIER 71
>gi|241959048|ref|XP_002422243.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
gi|223645588|emb|CAX40247.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
Length = 96
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV----EIDDETYE 67
PLDLIR LDE + VKLR REL+GKL YD H NM+L D +E + T + +D + E
Sbjct: 14 PLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQETIYTSNEGGDSEDSSKE 73
Query: 68 EIVR 71
IV+
Sbjct: 74 PIVK 77
>gi|58259393|ref|XP_567109.1| Sm-like protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134107471|ref|XP_777620.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260314|gb|EAL22973.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223246|gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 95
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
S ++EPLDL++L+L ER+ +KLR DR + G LHAYD H+N+++ EE + V++ +E
Sbjct: 7 SQIQEPLDLVKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEE 64
>gi|405118137|gb|AFR92912.1| hypothetical protein CNAG_00781 [Cryptococcus neoformans var.
grubii H99]
Length = 95
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 45/66 (68%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY 66
S ++EPLDL++L+L ER+ +KLR DR + G LHAYD H+N+++ EE + V++ +E
Sbjct: 7 SQIQEPLDLVKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHIVDVTEEGQ 66
Query: 67 EEIVRV 72
RV
Sbjct: 67 PLPPRV 72
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
ES +EPLDLIR LDE + VKLR RE++G+L YD H NM+L + EE + + D+ET
Sbjct: 7 ESQQQEPLDLIRFQLDEFVLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYIYSAG-DEET 65
>gi|389582457|dbj|GAB65195.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium cynomolgi
strain B]
Length = 91
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV--TTVEIDDETY 66
++ PLD IRL+++E +++K + DRE+RGKL AYD HLNMIL + E + E D+E+
Sbjct: 7 IQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQSVTENDEESI 66
Query: 67 EEIVR 71
++I R
Sbjct: 67 KKIER 71
>gi|45190730|ref|NP_984984.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|44983709|gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|374108207|gb|AEY97114.1| FAER125Cp [Ashbya gossypii FDAG1]
Length = 83
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
PLDL+RL+LDER+YVKLR R+L G L A+D H N++L D EE +
Sbjct: 5 PLDLLRLNLDERVYVKLRGARKLSGTLQAFDSHCNIVLSDAEETI 49
>gi|321250515|ref|XP_003191834.1| sm-like protein [Cryptococcus gattii WM276]
gi|317458301|gb|ADV20047.1| Sm-like protein, putative [Cryptococcus gattii WM276]
Length = 95
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 44/59 (74%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+S ++EPLDL++L+L ER+ +KLR DR + G LHAYD H+N+++ EE + +++ +E
Sbjct: 6 DSQIQEPLDLVKLALGERVLIKLRGDRIVTGILHAYDAHMNVVVSQAEESIHIIDVTEE 64
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC
42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC
42720]
Length = 130
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
EPLDLIR LDE + VKLR RE++GKL YD H NM+L D +E +
Sbjct: 54 EPLDLIRYQLDESVLVKLRGAREMKGKLQGYDSHCNMVLSDAQETI 99
>gi|119619949|gb|EAW99543.1| hCG1989832 [Homo sapiens]
Length = 68
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 34 LRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVC-CNLKILLLN 82
HAYDQHLNMILGD+EE VTT+EID+ETYEEI + N+ +L +
Sbjct: 5 FEADYHAYDQHLNMILGDMEETVTTIEIDEETYEEIYKPMKWNIPMLFVQ 54
>gi|296005050|ref|XP_002808862.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
gi|225632259|emb|CAX64140.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
Length = 91
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEI 61
E+ + ++ PLD IRL+++E I++K + DREL GKL AYD HLNMIL +V E + E
Sbjct: 2 EKIALIQNPLDYIRLNMEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKEN 61
Query: 62 DDETYEEIVR 71
D+ET +++ R
Sbjct: 62 DEETVKKMER 71
>gi|414879543|tpg|DAA56674.1| TPA: hypothetical protein ZEAMMB73_233599, partial [Zea mays]
Length = 67
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLH 39
VKEPLDLIRLSLDERIYVKLRSDRELRGKLH
Sbjct: 37 VKEPLDLIRLSLDERIYVKLRSDRELRGKLH 67
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
PLDL+RL+LDE++YVKLR R+L G L A+D H N++L D EE +
Sbjct: 5 PLDLLRLNLDEKVYVKLRGARKLTGTLQAFDSHCNIVLSDAEETI 49
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
E ++EPLDLIR LD+ + VKLR REL GKL YD H NM+L D E +
Sbjct: 7 EHQQLQEPLDLIRFQLDDYVVVKLRGARELYGKLQGYDSHCNMVLSDATETI 58
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
S +EPLDLIR LDE + +KLR RE++GKL YD H NM+L + EE + DD
Sbjct: 2 STKEEPLDLIRFHLDEFVLIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDD 58
>gi|354548424|emb|CCE45160.1| hypothetical protein CPAR2_701720 [Candida parapsilosis]
Length = 90
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
E +EPLDLIR LDE + VKLR RE +GKL YD H N++L D E + + D +
Sbjct: 7 EHKQQQEPLDLIRFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSDATETIFS---DKD 63
Query: 65 TYEEIVR 71
E I++
Sbjct: 64 GVEPIIK 70
>gi|194742710|ref|XP_001953844.1| GF17032 [Drosophila ananassae]
gi|190626881|gb|EDV42405.1| GF17032 [Drosophila ananassae]
Length = 301
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/39 (71%), Positives = 35/39 (89%), Gaps = 1/39 (2%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLH-AYDQHLN 46
VKEPLDLIRLSLDE++YVK+R++RELRG+LH YD +N
Sbjct: 164 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHRRYDADVN 202
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+ + +EPLDLIR LDE + VKLR RE++GKL YD H NM+L D E +
Sbjct: 5 QPQQKQEEPLDLIRYQLDETVLVKLRGAREMKGKLQGYDSHCNMVLSDATEYI 57
>gi|448535532|ref|XP_003870996.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis Co 90-125]
gi|380355352|emb|CCG24870.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis]
Length = 91
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
E +EPLDLIR LDE + VKLR RE +GKL YD H N++L D E +
Sbjct: 7 EHKQQQEPLDLIRFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSDATETI 58
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+++ PLDL++L+LDER+YVKLR REL G L A+D H N++L D E + +E
Sbjct: 2 SLETPLDLLKLNLDERVYVKLRGARELIGTLQAFDSHCNIVLSDAVETIYQLE 54
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 35/54 (64%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
E +EPLDL+R LDE + VKLR RE++GKL YD H NMIL D E + V
Sbjct: 7 EQQQQEPLDLVRYQLDELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDV 60
>gi|443687705|gb|ELT90598.1| hypothetical protein CAPTEDRAFT_145207, partial [Capitella
teleta]
Length = 70
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 34/41 (82%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQ 43
S + V+EPLDL+RLSLDERIYVK+R+DRELRG+LH +
Sbjct: 2 SRPVTTVEEPLDLVRLSLDERIYVKMRNDRELRGRLHVSNS 42
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
++ PLDL++L+LDER+YVKLR REL G L A+D H N++L D E +
Sbjct: 2 SLDAPLDLLKLNLDERVYVKLRGARELTGTLQAFDSHCNIVLSDAVESI 50
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
++ PLDL++L+LDER+YVKLR REL G L A+D H N +L D E +
Sbjct: 2 SLATPLDLLKLNLDERVYVKLRGARELVGTLQAFDSHCNFVLSDAVETI 50
>gi|50303649|ref|XP_451766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640898|emb|CAH02159.1| KLLA0B05203p [Kluyveromyces lactis]
Length = 83
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
PLDL++L+LDER+YVKLR REL G L A+D H N++L D +E +
Sbjct: 5 PLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETI 49
>gi|395516688|ref|XP_003762519.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Sarcophilus harrisii]
Length = 44
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 32/33 (96%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH 39
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LH
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLH 44
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
Length = 85
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
+++ PLDL++L+LDE++YVKLR R L G L A+D H N++L D E T E+DDE
Sbjct: 2 SLETPLDLLKLNLDEQVYVKLRGARSLVGTLQAFDSHCNIVLSDAIE--TIYELDDE 56
>gi|395516682|ref|XP_003762516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Sarcophilus harrisii]
Length = 58
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 30/32 (93%)
Query: 40 AYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
AYDQHLNMILGDVEE VTT+EID+ETYEEI +
Sbjct: 1 AYDQHLNMILGDVEETVTTIEIDEETYEEIYK 32
>gi|366997500|ref|XP_003678512.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
gi|342304384|emb|CCC72174.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
Length = 84
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
+++ PLDL++L+LDE++YVKLR R L G L A+D H N++L D E + +E D
Sbjct: 2 SLETPLDLLKLNLDEKVYVKLRGARSLTGTLQAFDSHCNIVLSDAVETIYELEDGD 57
>gi|401624580|gb|EJS42636.1| lsm3p [Saccharomyces arboricola H-6]
Length = 89
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E R
Sbjct: 4 PLDLLKLNLDERVYIKLRGARSLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESER 61
Query: 72 VC 73
C
Sbjct: 62 RC 63
>gi|401838766|gb|EJT42227.1| LSM3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 89
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E R
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESER 61
Query: 72 VC 73
C
Sbjct: 62 RC 63
>gi|170785183|pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
gi|170785184|pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
Length = 96
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E R
Sbjct: 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESER 68
Query: 72 VC 73
C
Sbjct: 69 RC 70
>gi|398366287|ref|NP_013543.3| Lsm3p [Saccharomyces cerevisiae S288c]
gi|12230246|sp|P57743.1|LSM3_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm3; AltName:
Full=SmX4 protein
gi|151940954|gb|EDN59336.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405474|gb|EDV08741.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256271118|gb|EEU06213.1| Lsm3p [Saccharomyces cerevisiae JAY291]
gi|259148415|emb|CAY81662.1| Lsm3p [Saccharomyces cerevisiae EC1118]
gi|285813843|tpg|DAA09739.1| TPA: Lsm3p [Saccharomyces cerevisiae S288c]
gi|349580131|dbj|GAA25292.1| K7_Lsm3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297940|gb|EIW09039.1| Lsm3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 89
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E R
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESER 61
Query: 72 VC 73
C
Sbjct: 62 RC 63
>gi|365759243|gb|EHN01044.1| Lsm3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 126
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PLDL++L+LDER+Y+KLR R L G L A+D H N++L D E T ++++E E R
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESER 61
Query: 72 VC 73
C
Sbjct: 62 RC 63
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+++ PLDL++L+LDE++YVKLR REL G L A+D H N++L D E +
Sbjct: 2 SLETPLDLLKLNLDEKVYVKLRGARELVGILQAFDSHCNIVLSDAVETI 50
>gi|302309894|ref|XP_002999599.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049204|emb|CAR58072.1| unnamed protein product [Candida glabrata]
Length = 85
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
++ PLDL++L+LDER+YVKLR R + G L A+D H N++L D E +
Sbjct: 2 SLSTPLDLLKLNLDERVYVKLRGARAMEGVLQAFDSHCNIVLSDAVETI 50
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
Length = 82
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
++ PLDL++L+LDE+IYVKLR REL G L A+D H N++L D E
Sbjct: 2 SLDAPLDLLKLNLDEKIYVKLRGARELSGILQAFDSHCNIVLSDAIET 49
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+EP DL+R LDE + VKLR RE++G+L YD H NM+L D E +
Sbjct: 11 QEPFDLVRYQLDELVLVKLRGAREMKGRLQGYDSHCNMVLSDAVEYI 57
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
Length = 85
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
PLDL++L+LDE +YVKLR R L G L A+D H N++L D E +
Sbjct: 5 PLDLLKLNLDETVYVKLRGARALTGTLQAFDSHCNIVLSDAVETI 49
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
PLDL++L+LDE+++VKLR RE+ G L A+D H N++L + E +
Sbjct: 4 PLDLLKLNLDEKVFVKLRGAREMTGVLQAFDSHCNIVLSNATETI 48
>gi|403214565|emb|CCK69066.1| hypothetical protein KNAG_0B06380 [Kazachstania naganishii CBS
8797]
Length = 83
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PL+L++L+LDER+YVKLR R + G L A+D H N++L D E
Sbjct: 5 PLNLLKLNLDERVYVKLRGARSMAGTLQAFDSHCNIVLSDAVET 48
>gi|123493455|ref|XP_001326296.1| Sm protein [Trichomonas vaginalis G3]
gi|121909208|gb|EAY14073.1| Sm protein [Trichomonas vaginalis G3]
Length = 84
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P D IRLS+++R+ VK++ +EL G LHAYD+H N+ILGDV E + ++
Sbjct: 7 PQDYIRLSMEKRVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLD 55
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
EPLD+++ S+ ++IY+K+R++ EL+G L +YD HLNMI+ EE
Sbjct: 6 EPLDVLKFSIAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEET 50
>gi|361127402|gb|EHK99371.1| putative GTP-binding protein 2 [Glarea lozoyensis 74030]
Length = 423
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMI 48
V EPLDL+RL LDE ++VKLR DREL+G+LHA + + +
Sbjct: 10 GPVSEPLDLVRLCLDEVVFVKLRGDRELKGRLHALSEFADYV 51
>gi|83315999|ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490948|gb|EAA22599.1| Putative Ribonucleoprotein [Plasmodium yoelii yoelii]
Length = 104
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLH---------AYDQHLNMILGDVEEVVTTVE 60
K PLD IRL+++E I++K + DREL G L AYD HLNMIL + +E V
Sbjct: 12 KGPLDYIRLNMEEEIFLKCKGDRELTGTLDVRKWIYIIIAYDNHLNMILSNAKEKYKQVT 71
Query: 61 IDDETYEEIVR 71
I++ EE V+
Sbjct: 72 IENN--EECVK 80
>gi|116191555|ref|XP_001221590.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88181408|gb|EAQ88876.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 117
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAY 41
+E SAV EPLDL+RL LDE + VKLR DREL+G+LH +
Sbjct: 6 DEGSAVSEPLDLVRLLLDEVVCVKLRGDRELKGRLHNH 43
>gi|448361838|ref|ZP_21550451.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
gi|445649518|gb|ELZ02455.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
Length = 78
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PLD++ SL ER+ V+L+S E G+L YDQH+N++L D + E D T E +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETDTATAESV 62
>gi|429192031|ref|YP_007177709.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|448324725|ref|ZP_21514137.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
gi|429136249|gb|AFZ73260.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|445617688|gb|ELY71281.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
Length = 75
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV DDE+ E+
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTSAADESVTDDESIED 61
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 7 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 59
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
M +++ PLD++ SL+ ++ +KL+ RE RG L+++D H+N++L D EE+
Sbjct: 1 MNAQKNLNTSRPLDVLGKSLNSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEEL 55
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 5 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S + V+ PLD + SL+ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 2 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 54
>gi|448717214|ref|ZP_21702669.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
gi|445786018|gb|EMA36794.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
Length = 78
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV D+E E I
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGNLAGYDQHMNLVLEDVASAADGTVADEEREEPI 62
>gi|448348652|ref|ZP_21537500.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|448369167|ref|ZP_21555934.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
gi|445642313|gb|ELY95381.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|445651710|gb|ELZ04618.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
Length = 78
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PLD++ SL ER+ V+L+S E G+L YDQH+N++L D + E + T E +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETEPATAESV 62
>gi|403166044|ref|XP_003325954.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375166048|gb|EFP81535.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 128
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + RI+V +++ RE GKL +D ++NM+L DV E TT E T
Sbjct: 7 PLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVT------ 60
Query: 72 VCCNLKILLLN 82
NLK LLN
Sbjct: 61 ---NLKQTLLN 68
>gi|448303276|ref|ZP_21493225.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
gi|445593061|gb|ELY47239.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
Length = 75
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV T+ I DE E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDV-----TIPIGDEVESE 56
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE-TYEEIV 70
PL LI + RIY+ LR DRE+ G L +D+++NM+L +VEE T+ +++ + +++
Sbjct: 22 PLALIDKCIGSRIYIILRGDREISGTLRGFDEYVNMVLDEVEEYGYTIVMNESASNKKLK 81
Query: 71 RVCCN 75
RV N
Sbjct: 82 RVLVN 86
>gi|403221170|dbj|BAM39303.1| uncharacterized protein TOT_010000762 [Theileria orientalis
strain Shintoku]
Length = 90
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M++ E SAV PL LI L +I++ +++D+E+ G L +D ++NM+L DV + T E
Sbjct: 1 MSTIEASAVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYTYTAE 60
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
M+ ++ PLD++ +L+ ++ +KL+ RE RG L ++D H+N++L D EE+
Sbjct: 1 MSVQKNVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEEL 55
>gi|448306523|ref|ZP_21496427.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
gi|445597821|gb|ELY51893.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
Length = 75
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV T+ + DE E
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDV-----TIPVGDEVESE 56
>gi|448356655|ref|ZP_21545382.1| Sm ribonucleoprotein-like protein [Natrialba chahannaoensis JCM
10990]
gi|445652767|gb|ELZ05650.1| Sm ribonucleoprotein-like protein [Natrialba chahannaoensis JCM
10990]
Length = 81
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL ER+ V+L+S E G+L YDQH+N++L
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVL 42
>gi|403166042|ref|XP_003889979.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
gi|375166047|gb|EHS63049.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 84
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + RI+V +++ RE GKL +D ++NM+L DV E TT E T
Sbjct: 7 PLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVT------ 60
Query: 72 VCCNLKILLLN 82
NLK LLN
Sbjct: 61 ---NLKQTLLN 68
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
M ++ ++ PLD + SL+ + ++L+ +RE RG L ++D H+N++L D EE+
Sbjct: 2 MEVNKQKNIQRPLDTLGKSLNSPVLIRLKGEREFRGILKSFDLHMNLVLNDAEEI 56
>gi|123498225|ref|XP_001327354.1| Sm protein [Trichomonas vaginalis G3]
gi|121910282|gb|EAY15131.1| Sm protein [Trichomonas vaginalis G3]
Length = 83
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
P D IRLS+++R+ V+L R L G LHAYD+H N+I+GDV E
Sbjct: 7 PQDYIRLSMEKRVKVQLEG-RVLEGVLHAYDEHYNIIIGDVTE 48
>gi|448300402|ref|ZP_21490403.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
gi|445585834|gb|ELY40123.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV + E+D ET E
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYDGDLAGYDQHMNLVLEDV-TIPLEGEVDAETPAE 60
>gi|435848032|ref|YP_007310282.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
gi|433674300|gb|AGB38492.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV E+DDE
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRAADR-EVDDE 56
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ + PLD + +L+ ++ +KL+ +E RG L ++D H+N++L D EE+
Sbjct: 5 KNNNNTSRPLDALGQALNSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEI 56
>gi|448284412|ref|ZP_21475672.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
gi|445570747|gb|ELY25306.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
Length = 84
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL ER+ V+L+S E G+L YDQH+N++L
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVL 42
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
V+ PLD + S++ + +KL+ DRE RG L ++D H+N++L D EE+
Sbjct: 6 VQRPLDALGKSVNSPVLIKLKGDREFRGILKSFDLHMNLVLNDAEEL 52
>gi|71033371|ref|XP_766327.1| U6 small nuclear ribonucleoprotein E [Theileria parva strain
Muguga]
gi|68353284|gb|EAN34044.1| U6 small nuclear ribonucleoprotein E, putative [Theileria parva]
Length = 90
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV------EE 54
M++ E SAV PL LI L +I++ +++D+E+ G L +D ++NM+L DV +
Sbjct: 1 MSTIEASAVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSPD 60
Query: 55 VVTTVEIDD 63
V T E++D
Sbjct: 61 GVKTTELND 69
>gi|84998502|ref|XP_953972.1| (U6) snRNA-associated Sm-like protein [Theileria annulata]
gi|65304970|emb|CAI73295.1| (U6) snRNA-associated Sm-like protein, putative [Theileria
annulata]
Length = 90
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV------EE 54
M++ E SAV PL LI L +I++ +++D+E+ G L +D ++NM+L DV +
Sbjct: 1 MSTIEASAVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSAD 60
Query: 55 VVTTVEIDD 63
V T E++D
Sbjct: 61 GVKTTELND 69
>gi|170085071|ref|XP_001873759.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651311|gb|EDR15551.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI+V ++SDRE GKL +D +NM+L DV E TT +
Sbjct: 7 PLELIDRCIGSRIWVIMKSDREFTGKLLGFDDFVNMVLEDVTEYETTPQ 55
>gi|448353248|ref|ZP_21542025.1| Sm ribonucleoprotein-like protein [Natrialba hulunbeirensis JCM
10989]
gi|445640825|gb|ELY93911.1| Sm ribonucleoprotein-like protein [Natrialba hulunbeirensis JCM
10989]
Length = 84
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL ER+ V+L+S E G+L YDQH+N++L
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVL 42
>gi|448321855|ref|ZP_21511330.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
gi|445602907|gb|ELY56878.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
Length = 75
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV E+DDE
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSR-AGDREVDDEA 57
>gi|448329423|ref|ZP_21518722.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
gi|445613929|gb|ELY67615.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
Length = 75
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL ER+ V+L+S E G+L YDQH+N++L DV
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYIGELAGYDQHMNLVLEDV 45
>gi|284166187|ref|YP_003404466.1| Sm ribonucleoprotein-like protein [Haloterrigena turkmenica DSM
5511]
gi|448390930|ref|ZP_21566397.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM
13891]
gi|284015842|gb|ADB61793.1| Like-Sm ribonucleoprotein core [Haloterrigena turkmenica DSM
5511]
gi|445666518|gb|ELZ19179.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM
13891]
Length = 74
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV
Sbjct: 5 PLDVLEASLGERVTVRLKSGGEYVGDLAGYDQHMNLVLEDV 45
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +L+ ++ +KL+ RE RG L ++D H+N++L D EE+
Sbjct: 32 PLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEEL 75
>gi|433590264|ref|YP_007279760.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|448332329|ref|ZP_21521573.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|448383664|ref|ZP_21562844.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
gi|433305044|gb|AGB30856.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|445627433|gb|ELY80757.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|445659266|gb|ELZ12073.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
Length = 74
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLSGYDQHMNLVLEDV 45
>gi|448313624|ref|ZP_21503337.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
gi|445597557|gb|ELY51631.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
Length = 75
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 45
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+PLD++ SL + V++R RE RG L YD H+N++L D EE+
Sbjct: 9 KPLDVLNKSLRSPVIVRIRGAREFRGTLEGYDLHMNLVLSDAEEL 53
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+PL ++ SL++ + V ++ ++E RG L YDQHLN++L +VEE++
Sbjct: 6 KPLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIIN 52
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 34/48 (70%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+PL ++ SL++ + V ++ ++E RG L YDQHLN++L +VEE++
Sbjct: 6 KPLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIING 53
>gi|193891015|gb|ACF28661.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 94
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MAS PL LI + RI+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 1 MASVSSGPSYLPLALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPE 60
>gi|336253861|ref|YP_004596968.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
gi|335337850|gb|AEH37089.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
Length = 75
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL ER+ V+L+S E G+L YDQH+N++L D
Sbjct: 5 PLDILEASLGERVTVRLKSGDEYVGELTGYDQHMNLVLEDA 45
>gi|390597684|gb|EIN07083.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 84
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+LI + RI+V +++DRE G L +D +NM+L DV E TT E +T
Sbjct: 7 PLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTEFETTPEGKKKT 60
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +L+ + V+LR RE RG+L YD H+N++L + EE+
Sbjct: 3 NRPLDILNNALNTPVIVRLRGSREFRGELQGYDVHMNLVLDNAEEL 48
>gi|444729623|gb|ELW70034.1| Homeobox protein orthopedia [Tupaia chinensis]
Length = 138
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 37 KLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCC-NLKILLL 81
++ AY+QHLN IL DV+E VTT+E D+ETYE++ + N+ +L +
Sbjct: 94 RVQAYEQHLN-ILADVKETVTTIETDEETYEDVYKSTKRNIPVLFI 138
>gi|448317324|ref|ZP_21506880.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
gi|445603844|gb|ELY57797.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
Length = 75
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL ER+ V+L+S E G L YDQH+N++L DV
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 45
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 3 QRPLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL 48
>gi|289580746|ref|YP_003479212.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
gi|289530299|gb|ADD04650.1| Like-Sm ribonucleoprotein core [Natrialba magadii ATCC 43099]
Length = 287
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL ER+ V+L+S E G+L YDQH+N++L
Sbjct: 208 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVL 245
>gi|328856633|gb|EGG05753.1| hypothetical protein MELLADRAFT_87625 [Melampsora larici-populina
98AG31]
Length = 935
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + RI+V +++ RE GKL +D ++NM+L DV E TT E T
Sbjct: 859 PLELIDRCIGSRIWVVMKTGREFTGKLLGFDDYVNMVLEDVTEYETTAEGHKIT------ 912
Query: 72 VCCNLKILLLN 82
NLK LLN
Sbjct: 913 ---NLKQTLLN 920
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ SL + V+L+ RE RG L YD H+N++L D EE+
Sbjct: 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEI 48
>gi|336376883|gb|EGO05218.1| hypothetical protein SERLA73DRAFT_174233 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389815|gb|EGO30958.1| hypothetical protein SERLADRAFT_455383 [Serpula lacrymans var.
lacrymans S7.9]
Length = 85
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+LI + RI+V ++SDRE G L +D +NM+L DV E TT + +T
Sbjct: 7 PLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKT 60
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 3 QRPLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL 48
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +L+ + V+L+ RE RGKL YD H+N++L + EE+
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGKLQGYDVHMNLVLDEAEEL 48
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL+ + VKL+ ++E+RG L +YDQH+N++L D EE+
Sbjct: 12 SLNNLVLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEI 48
>gi|383621641|ref|ZP_09948047.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|448702271|ref|ZP_21699925.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|445777641|gb|EMA28602.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
Length = 76
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL ER+ V+L+S E G+L YDQH+N++L
Sbjct: 5 PLDVLEASLGERVAVRLKSGDEYVGELAGYDQHMNLVL 42
>gi|145535864|ref|XP_001453665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421387|emb|CAK86268.1| unnamed protein product [Paramecium tetraurelia]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 2 ASEEESAVKEPLDL--IRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
++EE+ K P L I +S + ++ ++LR++R+L G++ A+D+H+NMIL +V E+ T +
Sbjct: 8 TAQEETLEKGPFGLLTITVSHNTQVLIELRNNRKLLGRVKAFDRHMNMILENVTEMWTEI 67
Query: 60 EIDDE 64
++
Sbjct: 68 PKGNK 72
>gi|21226441|ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
gi|452208952|ref|YP_007489066.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
gi|30173324|sp|Q8PZZ9.1|RUXX_METMA RecName: Full=Putative snRNP Sm-like protein
gi|20904702|gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
gi|452098854|gb|AGF95794.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
Length = 72
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL 48
>gi|448338508|ref|ZP_21527554.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|448345677|ref|ZP_21534566.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
gi|445622626|gb|ELY76076.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|445633610|gb|ELY86797.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
Length = 75
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL +R+ V+L+S E G L YDQH+N++L DV
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 45
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
K PLD++ +L + V+L+ RE RG L+ YD H+N++L + EE+
Sbjct: 3 KRPLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNIVLENAEEI 48
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL 48
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 3 QRPLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLENAEEL 48
>gi|20092011|ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
gi|30173335|sp|Q8TL47.1|RUXX_METAC RecName: Full=Putative snRNP Sm-like protein
gi|19917220|gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 72
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +LD + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL 48
>gi|402217704|gb|EJT97783.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 85
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI+V +++RE G+L +D +NM+L DV E +TT E
Sbjct: 7 PLELIDRCIGSRIWVITKTEREFAGRLLGFDDFVNMVLEDVTEFITTEE 55
>gi|448399368|ref|ZP_21570665.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
gi|445668989|gb|ELZ21605.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
Length = 75
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL +R+ V+L+S E G+L YDQH+N++L DV
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEHVGELAGYDQHMNLVLEDV 45
>gi|448341319|ref|ZP_21530281.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
gi|445628366|gb|ELY81674.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
Length = 75
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL +R+ V+L+S E G L YDQH+N++L DV
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 45
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
L + + +KL+ +RE+RGKL +YDQHLN++L D EE+
Sbjct: 13 LGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEI 48
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
L + + +KL+ +RE+RGKL +YDQHLN++L D EE+
Sbjct: 13 LGDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEI 48
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL+ + VKL+ ++E+RG L +YDQH+N++L D EE+
Sbjct: 15 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEI 51
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL+ + VKL+ ++E+RG L +YDQH+N++L D EE+
Sbjct: 17 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEI 53
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +L+ + V+L+ RE RG L YD H+N++L + EE+
Sbjct: 5 PLDILNNALNTAVIVRLKGAREFRGTLQGYDVHMNLVLDEAEEI 48
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL+ + VKL+ ++E+RG L +YDQH+N++L D EE+
Sbjct: 12 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEI 48
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ PLD++ SL+ + VKL+ R RG+L YD H+N++L + EE+
Sbjct: 3 QRPLDILNESLNGPVIVKLKDGRAFRGELQGYDIHMNLVLDNTEEI 48
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
M ++ PLD++ SL+ ++ ++L+ RE RG L ++D H+N++L + EE+
Sbjct: 1 MTVQKNLNTSRPLDVLGKSLNSQVLIELKGGREFRGLLKSFDMHMNLVLNEAEEL 55
>gi|448377944|ref|ZP_21560567.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
gi|445654917|gb|ELZ07766.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
Length = 99
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT----VEIDDETYE 67
PLD++ +L +R+ V L++ E G+L YDQH+N++L + E T+ + D+ET
Sbjct: 24 PLDVLEAALGDRVRVNLKTGTEYVGELAGYDQHMNLVLEEAERTATSETAPADGDEETSS 83
Query: 68 EIVRVCCNLKILLLN 82
+ + ++ +N
Sbjct: 84 QDTTIIRGDNVVSIN 98
>gi|409083153|gb|EKM83510.1| hypothetical protein AGABI1DRAFT_110162 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 84
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+LI + +I+V +++DRE G L +D +NM+L DV E TT E ET
Sbjct: 7 PLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKET 60
>gi|428672985|gb|EKX73898.1| U6 small nuclear ribonucleoprotein E, putative [Babesia equi]
Length = 88
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M++ E SA PL LI L +I++ ++ D+E+ G L +D ++NM+L +V E T E
Sbjct: 1 MSTIESSACYLPLALIDKCLGSKIWIIMKGDKEIAGILRGFDDYMNMVLEEVTEYSFTPE 60
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +L + V+L+ RE RG L YD H+N++L D EE+
Sbjct: 4 PLDVLNKALKTPVLVRLKGGREFRGTLDGYDIHMNLVLVDAEEI 47
>gi|426201795|gb|EKV51718.1| hypothetical protein AGABI2DRAFT_189942 [Agaricus bisporus var.
bisporus H97]
Length = 84
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+LI + +I+V +++DRE G L +D +NM+L DV E TT E ET
Sbjct: 7 PLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKET 60
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL L+ + RI+V +R DREL G L +D ++NM+L DV E
Sbjct: 20 PLALVDKCVGSRIWVIMRGDRELVGTLRGFDDYVNMVLDDVTE 62
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 10 KEPLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
K PLD++ L+ E + V L+ DRELRG L YD H+N++L EEV
Sbjct: 3 KRPLDILDQVLNGEPVIVSLKGDRELRGVLQGYDVHMNLVLDKAEEV 49
>gi|57640911|ref|YP_183389.1| small nuclear ribonucleoprotein [Thermococcus kodakarensis KOD1]
gi|73919284|sp|Q5JIE0.1|RUXX_PYRKO RecName: Full=Putative snRNP Sm-like protein
gi|57159235|dbj|BAD85165.1| snRNP component, Sm-like protein [Thermococcus kodakarensis KOD1]
Length = 76
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
PLD+I SLD+ + V L+ E RGKL YD HLN++L D E
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAE 46
>gi|354548281|emb|CCE45017.1| hypothetical protein CPAR2_700210 [Candida parapsilosis]
Length = 97
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL++I S+ +++ + + SD+E RG L +D +NM+L DV VVT + D +T +E+V+
Sbjct: 20 PLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDFVNMVLEDV-TVVTDSDNDADTKDEVVK 78
>gi|397773764|ref|YP_006541310.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
gi|397682857|gb|AFO57234.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
Length = 135
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PLD++ SL +R+ V+L+S E G L YDQH+N++L DV
Sbjct: 65 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 105
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+ PLD++ SL+ + V+L+ R RG+L YD H+N++L + EE+
Sbjct: 2 AQRPLDILNESLNSPVIVRLKDGRAFRGELQGYDIHMNLVLENTEEIA 49
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +L+ + V+L+ RE RG+L YD H+N++L + EE+
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGELQGYDVHMNLVLDNAEEL 48
>gi|50290221|ref|XP_447542.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526852|emb|CAG60479.1| unnamed protein product [Candida glabrata]
Length = 90
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
PL++I ++D+++++ L+S+RE GKL +D+ +N+IL D E T + +D E+V
Sbjct: 8 PLEVIDKTIDQQVHIILQSNREFSGKLVGFDEFVNVILEDPIEYTTEITANDGLKSEVV 66
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD++ +L + V+L+ RE RG L+ YD H+N++L + EE+
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNLVLQNAEEI 48
>gi|14600779|ref|NP_147300.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|10720267|sp|Q9YEQ5.1|RUXX_AERPE RecName: Full=Putative snRNP Sm-like protein
gi|5104175|dbj|BAA79491.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 77
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+D + VKL+S ++G L YDQHLN+ILGD EE+
Sbjct: 17 VDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEI 52
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ V+ PLD + +++ + +KL+ +RE RG L ++D H+N++L D EE+
Sbjct: 4 QQNVQRPLDALGKAVNSPVLIKLKGEREFRGILKSFDLHMNLVLDDAEEL 53
>gi|67601363|ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gi|54657379|gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium
hominis]
Length = 115
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL LI + RIYV ++ D+E G L +D+++NM+L DV+E
Sbjct: 23 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQE 65
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S+ + + VKL+ ++E+RGKL +YD HLN++L D EE+
Sbjct: 12 SMGQTVLVKLKGNKEVRGKLKSYDHHLNIVLEDAEEL 48
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
SL++ + VKL+ RE+RG+L +YD HLN++L + EE+ T
Sbjct: 12 SLEKNVLVKLKGGREIRGQLKSYDYHLNLVLENAEEIRGT 51
>gi|66363282|ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gi|90109709|pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|90109710|pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|321159967|pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|321159968|pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|46229827|gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
Length = 121
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL LI + RIYV ++ D+E G L +D+++NM+L DV+E
Sbjct: 29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQE 71
>gi|395334578|gb|EJF66954.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 85
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+LI + RI+V +++DRE G L +D +NM+L DV E TT + +T
Sbjct: 7 PLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKT 60
>gi|327311460|ref|YP_004338357.1| Small nuclear ribonucleoprotein (snRNP) --like protein
[Thermoproteus uzoniensis 768-20]
gi|326947939|gb|AEA13045.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Thermoproteus uzoniensis 768-20]
Length = 75
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
S+ +R+ VKLR E+RG L ++DQH+N++L D EEV+ V
Sbjct: 15 SIGKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVIDNV 55
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD+I SLD+ + V L+ E RGKL YD HLN++L D E +
Sbjct: 13 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADAEMI 56
>gi|156100461|ref|XP_001615958.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium vivax Sal-1]
gi|221059589|ref|XP_002260440.1| small nuclear ribonuclear protein [Plasmodium knowlesi strain H]
gi|148804832|gb|EDL46231.1| U6 snRNA-associated Sm-like protein LSm5, putative [Plasmodium
vivax]
gi|193810513|emb|CAQ41707.1| small nuclear ribonuclear protein, putative [Plasmodium knowlesi
strain H]
gi|389585422|dbj|GAB68153.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium cynomolgi
strain B]
Length = 101
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA+ S PL L+ + +I+V L+ D+E+ GKL +D+++NM+L DV E
Sbjct: 1 MATVSGSETFLPLALMDKCIGSKIWVMLKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|352683089|ref|YP_004893613.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
gi|350275888|emb|CCC82535.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
Length = 79
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
S+ +R+ VKLR E+RG L ++DQH+N++L D EEVV
Sbjct: 19 SIGKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVV 56
>gi|307596528|ref|YP_003902845.1| Sm ribonucleoprotein-like protein [Vulcanisaeta distributa DSM
14429]
gi|307551729|gb|ADN51794.1| Like-Sm ribonucleoprotein core [Vulcanisaeta distributa DSM
14429]
Length = 77
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL++ I VKLR+ E+RG L YDQHLN++L + EEV
Sbjct: 15 SLNKVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEEV 51
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL + VKL+ ++E+RG L +YDQH+N++L D EE+
Sbjct: 12 SLGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEI 48
>gi|326426796|gb|EGD72366.1| U6 snRNA-associated Sm-like protein LSm5 [Salpingoeca sp. ATCC
50818]
Length = 87
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++SD+EL G L +D+ +NM+L DV E
Sbjct: 6 PLELIDKCIGSRIHVVMKSDKELVGWLKGFDEFVNMVLTDVTE 48
>gi|315230063|ref|YP_004070499.1| snRNP Sm-like protein [Thermococcus barophilus MP]
gi|315183091|gb|ADT83276.1| putative snRNP Sm-like protein [Thermococcus barophilus MP]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
PLD+I SLD+ + V L+ E RGKL YD HLN++L D +
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADAQ 46
>gi|14591301|ref|NP_143379.1| small nuclear ribonucleoprotein [Pyrococcus horikoshii OT3]
gi|6094216|sp|O74016.1|RUXX_PYRHO RecName: Full=Putative snRNP Sm-like protein
gi|3257945|dbj|BAA30628.1| 75aa long hypothetical small nucleoprotein [Pyrococcus horikoshii
OT3]
Length = 75
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E V
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMV 48
>gi|433638868|ref|YP_007284628.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
gi|433290672|gb|AGB16495.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
Length = 99
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT----VEIDDETYE 67
PLD++ +L +R+ V L++ E G+L YDQH+N++L + E T+ D+ET
Sbjct: 24 PLDVLEAALGDRVRVHLKTGTEYVGELAGYDQHMNLVLEEAERTATSETTPANGDEETSS 83
Query: 68 EIVRVCCNLKILLLN 82
+ + ++ +N
Sbjct: 84 QDTTIIRGDNVVSIN 98
>gi|449551015|gb|EMD41979.1| hypothetical protein CERSUDRAFT_110522 [Ceriporiopsis
subvermispora B]
Length = 85
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+LI + RI+V ++SDRE G L +D +NM+L DV E T + +T
Sbjct: 7 PLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYENTPQGKKKT 60
>gi|167517977|ref|XP_001743329.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778428|gb|EDQ92043.1| predicted protein [Monosiga brevicollis MX1]
Length = 83
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+A +PL+L+ + RI+V +++D+EL G L +D +NM+L DV+E V T
Sbjct: 2 AAALQPLELVDKCIGSRIHVIMKNDKELVGTLLGFDDFVNMVLEDVKEYVIT 53
>gi|126460744|ref|YP_001057022.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250465|gb|ABO09556.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 80
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
S+ +++ VKLR E+RG L A+DQH+N++L D EE++
Sbjct: 19 SIGKQVLVKLRDSHEIRGILKAFDQHVNLLLDDAEEII 56
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRV 72
SL + + +KLR + +RGKL +YD HLN++L D EE E+ D ++ ++ V
Sbjct: 17 SLGQMVLIKLRGGKSVRGKLRSYDLHLNIVLDDAEE-----ELSDGSWRKLGTV 65
>gi|389852826|ref|YP_006355060.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
gi|388250132|gb|AFK22985.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
Length = 76
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAE 46
>gi|345563731|gb|EGX46716.1| hypothetical protein AOL_s00097g464 [Arthrobotrys oligospora ATCC
24927]
Length = 168
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D+RI VK RE+ G L YDQ +N++L DV+EV+ E +++T E
Sbjct: 80 LDLAKY-MDKRIIVKFSGGREVTGALKGYDQLMNLVLDDVQEVMRDDEGNEQTRE 133
>gi|392597490|gb|EIW86812.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 84
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + +I+V ++ DRE G L +D +NM+L DV E T E
Sbjct: 7 PLELIDRCIGSKIWVVMKGDREFSGTLLGFDDFVNMVLEDVTEFEITAE 55
>gi|330507312|ref|YP_004383740.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928120|gb|AEB67922.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 78
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ PLD++ SL+ + VKL+ R RG+L YD H+N+++ EEV
Sbjct: 9 QRPLDILNESLNGPVIVKLKDGRVFRGELQGYDIHMNLVMDKTEEV 54
>gi|242398502|ref|YP_002993926.1| snRNP Sm-like protein [Thermococcus sibiricus MM 739]
gi|259495716|sp|C6A1T2.1|RUXX_THESM RecName: Full=Putative snRNP Sm-like protein
gi|242264895|gb|ACS89577.1| Putative snRNP Sm-like protein [Thermococcus sibiricus MM 739]
Length = 76
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
PLD+I SLD+ + V L+ E RGKL YD HLN++L D +
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQ 46
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL + VKL+ ++E+RG L +YDQH+N++L D EE+
Sbjct: 15 SLGNLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEI 51
>gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948592|pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948593|pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948594|pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948595|pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948596|pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948597|pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948598|pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948599|pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948600|pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948601|pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948602|pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948603|pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948604|pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
+ + PLD+I SLD+ + V L+ E RG+L YD HLN++L D E
Sbjct: 2 AMAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAE 48
>gi|332157748|ref|YP_004423027.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
gi|331033211|gb|AEC51023.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
Length = 75
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAE 46
>gi|14520857|ref|NP_126332.1| small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
gi|10720266|sp|Q9V0Y8.1|RUXX_PYRAB RecName: Full=Putative snRNP Sm-like protein
gi|27573606|pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573607|pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573608|pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573609|pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573610|pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573611|pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573612|pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573613|pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573614|pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573615|pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573616|pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573617|pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573618|pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573619|pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573620|pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573621|pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573622|pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573623|pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573624|pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573625|pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573626|pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573627|pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573628|pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573629|pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573630|pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573631|pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573632|pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573633|pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|5458074|emb|CAB49563.1| Heptameric Sm/Lsm protein [Pyrococcus abyssi GE5]
gi|380741401|tpe|CCE70035.1| TPA: small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
Length = 75
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
PLD+I SLD+ + V L+ E RG+L YD HLN++L D E
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAE 46
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ +K++ D LRGKL +YDQHLN++L DVEE+
Sbjct: 17 VLIKIKDDITLRGKLRSYDQHLNIVLDDVEEI 48
>gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein [Pyrococcus furiosus DSM 3638]
gi|397652035|ref|YP_006492616.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
gi|23822154|sp|Q8U0P4.1|RUXX_PYRFU RecName: Full=Putative snRNP Sm-like protein
gi|18893680|gb|AAL81666.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus
DSM 3638]
gi|393189626|gb|AFN04324.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
Length = 76
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
PLD+I SLD+ + V L+ E RGKL YD HLN++L + E
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAE 46
>gi|393218481|gb|EJD03969.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 85
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++DRE G L +D +NM+L DV E
Sbjct: 7 PLELIDTCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTE 49
>gi|323507716|emb|CBQ67587.1| probable U6 snRNA-associated Sm-like protein LSm5 [Sporisorium
reilianum SRZ2]
Length = 103
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + I+V +++DRE G L +D ++NM+L DV E TT +
Sbjct: 24 PLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETTPD 72
>gi|384249954|gb|EIE23434.1| Sm-E protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI ++ +I+V ++ D+EL+G L +D +NM+L DVEE T E
Sbjct: 18 PSELIDKCINSKIWVIMKGDKELQGTLRGFDVFVNMVLEDVEEYEMTAE 66
>gi|296423698|ref|XP_002841390.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637628|emb|CAZ85581.1| unnamed protein product [Tuber melanosporum]
Length = 84
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI+V ++ D+E G L +D ++NM+L DV E +T E
Sbjct: 7 PLELVDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEYESTGE 55
>gi|409095290|ref|ZP_11215314.1| small nuclear ribonucleoprotein [Thermococcus zilligii AN1]
Length = 76
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD+I SLD + V L+ E RGKL YD HLN++L D + +
Sbjct: 5 PLDIIHRSLDRDVLVLLKKGGEFRGKLIGYDIHLNVVLADADYI 48
>gi|375082287|ref|ZP_09729353.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
gi|374743044|gb|EHR79416.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
Length = 76
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
PLD+I SLD+ + V L+ E RG+L YD HLN++L D +
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEFRGRLIGYDIHLNVVLADAQ 46
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PLD++ +L+ + V+L+ RE RG L YD H+N++L + EE
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEE 47
>gi|212223792|ref|YP_002307028.1| small nuclear ribonucleoprotein [Thermococcus onnurineus NA1]
gi|229559994|sp|B6YUU5.1|RUXX_THEON RecName: Full=Putative snRNP Sm-like protein
gi|212008749|gb|ACJ16131.1| Hypothetical small nuclear ribonucleoprotein [Thermococcus
onnurineus NA1]
Length = 78
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD+I SLD+ + V L+ E RGKL YD HLN++L E +
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMI 48
>gi|124809480|ref|XP_001348585.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23497482|gb|AAN37024.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
MA+ S PL L+ + +I++ ++ D+E+ GKL +D+++NM+L DV E
Sbjct: 1 MATISGSETFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S+ + VKL+ ++E+RG L +YDQH+N++L D EE+
Sbjct: 12 SVGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEI 48
>gi|732947|emb|CAA83056.1| SmX4 protein [Saccharomyces cerevisiae]
Length = 33
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAY 41
PLDL++L+LDER+Y+KLR R L G L A+
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAF 33
>gi|402467605|gb|EJW02881.1| hypothetical protein EDEG_02705 [Edhazardia aedis USNM 41457]
Length = 68
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
+K+P +L+ E I ++LR + ++G LHAYD+H+N+I+ +V+
Sbjct: 1 MKDPSELLSTYTQEEIMIRLRDGQLIKGNLHAYDEHMNVIMSNVK 45
>gi|409721748|ref|ZP_11269904.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
gi|448721880|ref|ZP_21704423.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
gi|445790952|gb|EMA41602.1| Sm ribonucleoprotein-like protein [Halococcus hamelinensis 100A6]
Length = 74
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PLD++ +L +R+ V+L+ G+L YDQH+N++L EE
Sbjct: 5 PLDVLEATLGDRVTVRLKDGAAYAGELGGYDQHMNVVLDPAEE 47
>gi|358392255|gb|EHK41659.1| hypothetical protein TRIATDRAFT_250596 [Trichoderma atroviride
IMI 206040]
Length = 84
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLMGFDDYVNMVLEDVTE 49
>gi|145509212|ref|XP_001440550.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407767|emb|CAK73153.1| unnamed protein product [Paramecium tetraurelia]
Length = 152
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EE + K P L+ ++++ + +++LR++R+ G++ A+D+H+NMIL ++ E+ +
Sbjct: 48 TAEEATLEKGPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTEMW--I 105
Query: 60 EIDDET 65
EI ET
Sbjct: 106 EISKET 111
>gi|171184523|ref|YP_001793442.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170933735|gb|ACB38996.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 80
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
S+ +++ VKLR E+RG L ++DQH+N++L D EE++
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEII 56
>gi|68482073|ref|XP_715054.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
gi|46436659|gb|EAK96018.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
Length = 119
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
M+ E PL++I S+ +R+ V + D+E GKL +D ++NM+L DV EV
Sbjct: 43 MSDETVPQTVLPLEVIDRSVGKRVRVLMTGDKEFNGKLIGFDDYVNMVLEDVTEV 97
>gi|452822058|gb|EME29081.1| U6 snRNA-associated Sm-like protein LSm5 [Galdieria sulphuraria]
Length = 89
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + +I+V +++D+E G L +DQ +NM+L DV E T E
Sbjct: 10 PLELVDKCIGSQIWVLMKTDKEFTGILRGFDQFVNMVLEDVSEYEWTSE 58
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
S+ +++ VKLR E+RG L ++DQH+N++L D EE++
Sbjct: 19 SIGKQVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEII 56
>gi|320032480|gb|EFW14433.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 84
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ DRE G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTE 49
>gi|325968287|ref|YP_004244479.1| Sm ribonucleoprotein-like protein [Vulcanisaeta moutnovskia
768-28]
gi|323707490|gb|ADY00977.1| Like-Sm ribonucleoprotein core [Vulcanisaeta moutnovskia 768-28]
Length = 72
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+L++ I VKLR+ E+RG L YDQHLN++L + EE+
Sbjct: 11 NLNKVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEEI 47
>gi|392867674|gb|EAS29072.2| U6 snRNA-associated Sm-like protein LSm5 [Coccidioides immitis
RS]
Length = 84
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ DRE G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTE 49
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKI 78
S+ +++ VKLR E+RG L ++DQH+N++L D EE+ ID Y+ V +
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-----IDGNVYKRGTMVVRGENV 73
Query: 79 LLLN 82
L ++
Sbjct: 74 LFIS 77
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 18 LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
L ++ RI V ++ R+L GK A+D+H+N++LGD EE+ ++ EE
Sbjct: 11 LYINWRIRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKSQEE 61
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKI 78
S+ +++ VKLR E+RG L ++DQH+N++L D EE+ ID Y+ V +
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-----IDGNVYKRGTMVVRGENV 73
Query: 79 LLLN 82
L ++
Sbjct: 74 LFIS 77
>gi|302421256|ref|XP_003008458.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261351604|gb|EEY14032.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|346974640|gb|EGY18092.1| hypothetical protein VDAG_08426 [Verticillium dahliae VdLs.17]
Length = 80
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLTGFDDYVNMVLEDVTE 49
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 18 LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEE 68
L ++ R+ V ++ R+L GK A+D+H+N++LGD EE+ +T EE
Sbjct: 11 LYINWRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKTQEE 61
>gi|48477742|ref|YP_023448.1| small nuclear ribonucleoprotein [Picrophilus torridus DSM 9790]
gi|48430390|gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 82
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 35/55 (63%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+ + + V +P+D+++ SL++ I V ++ +R G L YD ++N++L +V E +
Sbjct: 2 ANKTAYVSKPMDVLKNSLEKNIMVDVKGNRTYSGTLEGYDIYMNVVLSNVSETIN 56
>gi|428180050|gb|EKX48919.1| hypothetical protein GUITHDRAFT_93594 [Guillardia theta CCMP2712]
Length = 94
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI++ L+ D+E G L +D ++NM+L DV E
Sbjct: 11 PLELIDRCIGSRIWIILKGDKEFVGTLQGFDDYVNMVLEDVTE 53
>gi|253748557|gb|EET02611.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
intestinalis ATCC 50581]
Length = 126
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
AS E + PL L++ SL++RI + L+++ + G L ++D+H+N+IL + EE
Sbjct: 43 ASPEYTEFANPLYLLKTSLEDRITILLQNNSSVTGLLASFDEHMNIILINAEET 96
>gi|399576624|ref|ZP_10770379.1| small nuclear ribonucleoprotein, lsm family [Halogranum salarium
B-1]
gi|399238068|gb|EJN58997.1| small nuclear ribonucleoprotein, lsm family [Halogranum salarium
B-1]
Length = 77
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
PLD++ SL+E + V+L+ E G L YDQH+N++L EE ++++DD+ E+
Sbjct: 5 PLDVLEASLNEPVTVQLKDGAEYYGTLAGYDQHMNVVL---EE---SLDVDDDALGEL 56
>gi|302697739|ref|XP_003038548.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
gi|300112245|gb|EFJ03646.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
Length = 84
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
PL+LI + RI+V +++D E G L +D +NM+L DV E TT
Sbjct: 7 PLELIDRCIGSRIWVVMKNDHEFTGTLLGFDDFVNMVLEDVTEYETTA 54
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S+ + VKL+ E+RG+L +YDQHLN++L D EE+
Sbjct: 12 SIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEI 48
>gi|336473000|gb|EGO61160.1| hypothetical protein NEUTE1DRAFT_116005 [Neurospora tetrasperma
FGSC 2508]
gi|350293750|gb|EGZ74835.1| putative U6 SNRNA-associated SM-LIKE protein LSM5 [Neurospora
tetrasperma FGSC 2509]
gi|380092260|emb|CCC10036.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 84
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|341581440|ref|YP_004761932.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
gi|340809098|gb|AEK72255.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
Length = 76
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD+I SLD+ + V L+ E RG+L YD HLN++L D
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLAD 44
>gi|121711305|ref|XP_001273268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
gi|119401419|gb|EAW11842.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
Length = 83
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|448410087|ref|ZP_21575036.1| Sm ribonucleoprotein-like protein [Halosimplex carlsbadense
2-9-1]
gi|445672367|gb|ELZ24943.1| Sm ribonucleoprotein-like protein [Halosimplex carlsbadense
2-9-1]
Length = 61
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD++ SL E + V+L+ E G L YDQH+N++L D
Sbjct: 5 PLDVLEASLGEEVTVRLKGGEEYVGDLSGYDQHMNLVLED 44
>gi|393228545|gb|EJD36188.1| U6 snRNA-associated Sm-like protein LSm7 [Auricularia delicata
TFB-10046 SS5]
Length = 116
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
LDL + +ERI VK RE+ G L YDQ LN++L DVEEV+ E
Sbjct: 34 LDLSKYQ-NERIRVKFTGGREVTGILKGYDQLLNLVLDDVEEVIQEPE 80
>gi|70987204|ref|XP_749081.1| small nuclear ribonucleoprotein (LSM5) [Aspergillus fumigatus
Af293]
gi|66846711|gb|EAL87043.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus Af293]
gi|159123148|gb|EDP48268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|154149642|ref|YP_001403260.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153998194|gb|ABS54617.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 76
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 10 KEPLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
K PLD++ L L+ + + V L+ RE+RG L YD H+N++L EE
Sbjct: 3 KRPLDILDLVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEE 48
>gi|388852511|emb|CCF53913.1| probable U6 snRNA-associated Sm-like protein LSm5 [Ustilago
hordei]
Length = 103
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + I+V +++DRE G L +D ++NM+L DV E T ++
Sbjct: 24 PLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETCLD 72
>gi|374629344|ref|ZP_09701729.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907457|gb|EHQ35561.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 75
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
K PL+++ +L+++ + V L+ RE+RG L YD H+N++L + EE + V T
Sbjct: 3 KRPLEILDKALNQKPVIVSLKGGREIRGVLQGYDVHMNLVLENAEEEINGVTTKAGT 59
>gi|380474440|emb|CCF45778.1| U6 snRNA-associated Sm-like protein LSm5 [Colletotrichum
higginsianum]
Length = 82
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|310792345|gb|EFQ27872.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 82
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|169843758|ref|XP_001828604.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
gi|116510312|gb|EAU93207.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
Length = 84
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + +I+V +++DRE G L +D +NM+L DV E T +
Sbjct: 7 PLELIDRCIGSKIWVVMKNDREFTGTLLGFDDFVNMVLEDVTEFENTPQ 55
>gi|16944624|emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Neurospora
crassa]
Length = 84
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFAGTLVGFDDYVNMVLEDVTE 49
>gi|390960267|ref|YP_006424101.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
gi|390518575|gb|AFL94307.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
Length = 76
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD+I SLD+ + V L+ E RG+L YD HLN++L D
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLAD 44
>gi|340522327|gb|EGR52560.1| predicted protein [Trichoderma reesei QM6a]
Length = 84
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|330801323|ref|XP_003288678.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
gi|325081300|gb|EGC34821.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
Length = 92
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 1 MASEEESAVKE--PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
M+ E + +++ PL+LI + RI++ +++D+E G L +D ++N+ L DV E T
Sbjct: 1 MSEEASTQIEQILPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYT 60
Query: 59 VE 60
E
Sbjct: 61 PE 62
>gi|307354786|ref|YP_003895837.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307158019|gb|ADN37399.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 75
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 10 KEPLDLIRLSLDER-IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
K PL+++ +L+++ + V L+ RE+RG L YD H+N++L + EE + V
Sbjct: 3 KRPLEILDQALNQKPVIVSLKGGREIRGILQGYDVHMNLVLENAEEEINGV 53
>gi|358054346|dbj|GAA99272.1| hypothetical protein E5Q_05966 [Mixia osmundae IAM 14324]
Length = 83
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + R++V L+S+RE+ G L +D +NM+L DV E T +
Sbjct: 7 PLELIDKCIGSRLWVVLKSEREIVGTLLGFDDFVNMVLDDVTEYENTAQ 55
>gi|115395198|ref|XP_001213486.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193055|gb|EAU34755.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 83
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|396082353|gb|AFN83963.1| small nuclear ribonucleoprotein D2 [Encephalitozoon romaleae
SJ-2008]
Length = 128
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+EE +K PL L+ ++ + + V LR++R++ GK+ AYD+H N+++GD +E+
Sbjct: 13 KEEMEMKGPLSLVHRAMVKAMPVLVSLRNNRKVMGKVIAYDRHYNLLMGDAKEI 66
>gi|238482069|ref|XP_002372273.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
gi|220700323|gb|EED56661.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
Length = 83
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 49
>gi|367025621|ref|XP_003662095.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
gi|347009363|gb|AEO56850.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
Length = 85
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFAGTLVGFDDYVNMVLEDVTE 49
>gi|258563080|ref|XP_002582285.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907792|gb|EEP82193.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 139
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
LDL + +D+ ++VK RE+ G L YDQ +N++L DV+E++ E +D T
Sbjct: 53 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDDVKEIMRDDEGNDST 104
>gi|196001101|ref|XP_002110418.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190586369|gb|EDV26422.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 84
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI++ ++SD+E+ G L +D +NM+L DV E TT +
Sbjct: 8 PLELIDKCIGSRIHIIMKSDKEVVGTLLGFDDFVNMVLEDVTEYETTAD 56
>gi|317034233|ref|XP_001396223.2| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus niger CBS
513.88]
gi|358373053|dbj|GAA89653.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 83
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 49
>gi|342878459|gb|EGU79796.1| hypothetical protein FOXB_09655 [Fusarium oxysporum Fo5176]
gi|408388349|gb|EKJ68035.1| hypothetical protein FPSE_11846 [Fusarium pseudograminearum
CS3096]
Length = 83
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|322368834|ref|ZP_08043401.1| snRNP-like protein [Haladaptatus paucihalophilus DX253]
gi|320551565|gb|EFW93212.1| snRNP-like protein [Haladaptatus paucihalophilus DX253]
Length = 60
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD++ SL+ + V+L+ E G L YDQH+N+++ D
Sbjct: 5 PLDVLEASLNSAVTVQLKGGEEYTGTLTGYDQHMNLVIED 44
>gi|156083176|ref|XP_001609072.1| small nuclear ribonucleoprotein [Babesia bovis T2Bo]
gi|154796322|gb|EDO05504.1| small nuclear ribonucleoprotein, putative [Babesia bovis]
Length = 162
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+E++ PL ++ + + ++ + RS+R+L G++ A+D+H NMIL DV E+ T V
Sbjct: 69 TTEDKDCPSGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEV 128
Query: 60 E 60
Sbjct: 129 S 129
>gi|302909361|ref|XP_003050056.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730993|gb|EEU44343.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 83
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|168057690|ref|XP_001780846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667702|gb|EDQ54325.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 4 TEEEEFSTGPLSVLAMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 62
>gi|255953479|ref|XP_002567492.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589203|emb|CAP95343.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 83
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM++ DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVMEDVTE 49
>gi|268561698|ref|XP_002638393.1| C. briggsae CBR-LSM-5 protein [Caenorhabditis briggsae]
gi|341889312|gb|EGT45247.1| hypothetical protein CAEBREN_08263 [Caenorhabditis brenneri]
gi|341889389|gb|EGT45324.1| hypothetical protein CAEBREN_18101 [Caenorhabditis brenneri]
Length = 91
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + +I+V +++D+E+ G L +D ++NM+L DV E T E
Sbjct: 14 PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAE 62
>gi|354610729|ref|ZP_09028685.1| Like-Sm ribonucleoprotein core [Halobacterium sp. DL1]
gi|353195549|gb|EHB61051.1| Like-Sm ribonucleoprotein core [Halobacterium sp. DL1]
Length = 60
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V+L+ E G L YDQH+N++L
Sbjct: 5 PLDVLEESLEESVTVRLKDGEEFTGVLTGYDQHMNIVL 42
>gi|309241419|ref|XP_003115877.1| CRE-LSM-5 protein [Caenorhabditis remanei]
gi|308256412|gb|EFP00365.1| CRE-LSM-5 protein [Caenorhabditis remanei]
Length = 91
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + +I+V +++D+E+ G L +D ++NM+L DV E T E
Sbjct: 14 PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAE 62
>gi|119872589|ref|YP_930596.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673997|gb|ABL88253.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 80
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
++ +++ VKLR E+RG L ++DQH+N++L D EE++
Sbjct: 19 AIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEII 56
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 30/39 (76%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+L +++ +K + + LRGKL ++DQHLN++L D EE+++
Sbjct: 12 NLGKQVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILS 50
>gi|449018389|dbj|BAM81791.1| U6 snRNA-associated Sm-like protein LSm5 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+ PL+L+ ++ R+++ LR RE G L +D+++N+ L DV+E + E
Sbjct: 1 MAAHANQPSLYPLELVDAAVGTRVWIILRGAREFCGILRGFDEYVNLFLEDVDEYTYSEE 60
>gi|317139035|ref|XP_003189120.1| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus oryzae
RIB40]
Length = 102
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V +++D+E G L +D ++NM+L DV E
Sbjct: 26 PLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 68
>gi|344302358|gb|EGW32663.1| hypothetical protein SPAPADRAFT_61726 [Spathaspora passalidarum
NRRL Y-27907]
Length = 84
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
PL++I S+ ++ V + SD+E GKL +D ++NM+L DV VEID+E
Sbjct: 12 PLEIIDKSVGNKVKVLMTSDKEFYGKLIGFDDYVNMVLEDV------VEIDNE 58
>gi|295657072|ref|XP_002789110.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284564|gb|EEH40130.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|392571152|gb|EIW64324.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 85
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++S+RE G L +D +NM+L DV E
Sbjct: 7 PLELIDRCIGSRIWVIMKSEREFTGTLLGFDDFVNMVLEDVTE 49
>gi|297824871|ref|XP_002880318.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
gi|21592784|gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
gi|297326157|gb|EFH56577.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
Length = 105
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 10 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 68
>gi|315045688|ref|XP_003172219.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
gi|311342605|gb|EFR01808.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
Length = 84
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|388579402|gb|EIM19726.1| LSM-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 87
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++++RE G L +D +NM+L DV E
Sbjct: 7 PLELIDKCIGSRIWVIMKNEREFVGTLQGFDDFVNMVLDDVTE 49
>gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145331435|ref|NP_001078076.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145339793|ref|NP_567134.3| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis
thaliana]
gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis
thaliana]
gi|330255773|gb|AEC10867.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255776|gb|AEC10870.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646879|gb|AEE80400.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 14 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72
>gi|212720721|ref|NP_001132149.1| uncharacterized protein LOC100193568 [Zea mays]
gi|194693576|gb|ACF80872.1| unknown [Zea mays]
gi|414586342|tpg|DAA36913.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
gi|414586343|tpg|DAA36914.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 105
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 9/68 (13%)
Query: 1 MASEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
MA E E+ KE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MADENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 52 VEEVVTTV 59
V E+ T V
Sbjct: 61 VREMWTEV 68
>gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145332931|ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis
thaliana]
gi|330255774|gb|AEC10868.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255775|gb|AEC10869.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646880|gb|AEE80401.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 108
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 71
>gi|223478369|ref|YP_002582798.1| snRNP Sm-like protein [Thermococcus sp. AM4]
gi|240103795|ref|YP_002960104.1| small nuclear ribonucleoprotein [Thermococcus gammatolerans EJ3]
gi|259495715|sp|C5A1H1.1|RUXX_THEGJ RecName: Full=Putative snRNP Sm-like protein
gi|214033595|gb|EEB74422.1| hypothetical snRNP Sm-like protein [Thermococcus sp. AM4]
gi|239911349|gb|ACS34240.1| Small nuclear ribonucleoprotein (snRNP)-like protein, Sm-like
protein [Thermococcus gammatolerans EJ3]
Length = 76
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PLD+I SLD+ + V L+ E RGKL YD HLN++L + +
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYI 48
>gi|448414146|ref|ZP_21577285.1| small nuclear ribonucleoprotein, lsm family [Halosarcina pallida
JCM 14848]
gi|445682439|gb|ELZ34856.1| small nuclear ribonucleoprotein, lsm family [Halosarcina pallida
JCM 14848]
Length = 77
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V L+ G L YDQH+N++L
Sbjct: 5 PLDVLEASLEETVTVNLKDGSSYHGTLAGYDQHMNVVL 42
>gi|261190750|ref|XP_002621784.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591207|gb|EEQ73788.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239614892|gb|EEQ91879.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
gi|327352333|gb|EGE81190.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 84
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFAGTLLGFDDYVNMVLEDVTE 49
>gi|237835661|ref|XP_002367128.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|211964792|gb|EEA99987.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|221485337|gb|EEE23618.1| snRNP protein Lsm5, putative [Toxoplasma gondii GT1]
gi|221506198|gb|EEE31833.1| snRNP protein Lsm5, putative [Toxoplasma gondii VEG]
Length = 119
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL L+ + R+++ ++ D+EL G L +D +NM+L DV E T
Sbjct: 26 PLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFT 72
>gi|297821194|ref|XP_002878480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324318|gb|EFH54739.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 109
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 14 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72
>gi|225711126|gb|ACO11409.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ ++ RI++ ++ D+E+ G L +D +NM+L DV E +T E
Sbjct: 15 PLELVDKAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFESTSE 63
>gi|259484847|tpe|CBF81418.1| TPA: small nuclear ribonucleoprotein (LSM5), putative
(AFU_orthologue; AFUA_7G04280) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI++ +++D+E G L +D ++NM+L DV E
Sbjct: 53 PLELIDKCVGSRIWIIMKNDKEFSGTLLGFDDYVNMVLEDVTE 95
>gi|401413338|ref|XP_003886116.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
gi|325120536|emb|CBZ56090.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
Length = 118
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL L+ + R+++ ++ D+EL G L +D +NM+L DV E T
Sbjct: 25 PLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFT 71
>gi|407921630|gb|EKG14771.1| hypothetical protein MPH_08046 [Macrophomina phaseolina MS6]
Length = 83
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|389610013|dbj|BAM18618.1| small nuclear ribonucleoprotein, core [Papilio xuthus]
Length = 95
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E +T E
Sbjct: 13 PLELVDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 61
>gi|299471840|emb|CBN77010.1| Sm-like protein LSm5 [Ectocarpus siliculosus]
Length = 85
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + R+++ ++ D+EL G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTE 49
>gi|212532417|ref|XP_002146365.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
gi|210071729|gb|EEA25818.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
Length = 83
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|342886030|gb|EGU85973.1| hypothetical protein FOXB_03482 [Fusarium oxysporum Fo5176]
Length = 133
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
LDL + +D++I VK RE++G L YD +N++L DV EVV E +D T
Sbjct: 47 LDLGKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNDST 98
>gi|290999453|ref|XP_002682294.1| predicted protein [Naegleria gruberi]
gi|284095921|gb|EFC49550.1| predicted protein [Naegleria gruberi]
Length = 103
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
+E + +PL+LI + I+V ++ D+EL G L +D ++NMIL +V E
Sbjct: 6 TENTIPIIQPLELIDKCIGSSIFVLMKDDKELVGTLRGFDDYINMILDNVTE 57
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ +K++ + +RGKL +YDQHLN++L D EEV
Sbjct: 18 VLIKMKGEVSIRGKLRSYDQHLNIVLDDAEEV 49
>gi|225710006|gb|ACO10849.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ ++ RI++ ++ D+E+ G L +D +NM+L DV E +T E
Sbjct: 15 PLELVDRAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFESTSE 63
>gi|443896082|dbj|GAC73426.1| U6 snRNA-associated Sm-like protein [Pseudozyma antarctica T-34]
Length = 103
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL+LI + I+V ++S+RE G L +D ++NM+L DV E T
Sbjct: 24 PLELIDKCIGSSIWVIMKSEREFSGTLLGFDDYVNMVLEDVTEYET 69
>gi|193890979|gb|ACF28643.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 82
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
L LI + RI+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 1 LALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPE 48
>gi|358389647|gb|EHK27239.1| hypothetical protein TRIVIDRAFT_73167 [Trichoderma virens Gv29-8]
Length = 84
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 10 KEPLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
K PLD++ L+ + + V L+ RELRG L YD H+N++L EE+
Sbjct: 3 KRPLDILDQVLNRQPVIVSLKGGRELRGVLQGYDVHMNLVLDKAEEI 49
>gi|225681342|gb|EEH19626.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 130
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|66827081|ref|XP_646895.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74859089|sp|Q55EX5.1|LSM5_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm5
gi|60475011|gb|EAL72947.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI++ +++D+E G L +D ++N+ L DV E T E
Sbjct: 18 PLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPE 66
>gi|440465859|gb|ELQ35159.1| hypothetical protein OOU_Y34scaffold00725g17 [Magnaporthe oryzae
Y34]
Length = 82
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTE 49
>gi|168017146|ref|XP_001761109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687795|gb|EDQ74176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 4 TEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 60
>gi|353243444|emb|CCA74984.1| probable U6 snRNA-associated Sm-like protein LSm5 [Piriformospora
indica DSM 11827]
Length = 84
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL+LI + RI V L++DRE G L +D +NM+L DV E T
Sbjct: 7 PLELIDRCIGSRITVILKNDREFTGVLLGFDDFVNMVLEDVTECQT 52
>gi|313125954|ref|YP_004036224.1| small nuclear ribonucleoprotein, lsm family [Halogeometricum
borinquense DSM 11551]
gi|448285794|ref|ZP_21477033.1| small nuclear ribonucleoprotein, lsm family [Halogeometricum
borinquense DSM 11551]
gi|312292319|gb|ADQ66779.1| Small nuclear ribonucleoprotein, LSM family [Halogeometricum
borinquense DSM 11551]
gi|445575824|gb|ELY30287.1| small nuclear ribonucleoprotein, lsm family [Halogeometricum
borinquense DSM 11551]
Length = 77
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V L+ G L YDQH+N++L
Sbjct: 5 PLDVLEASLEESVTVNLKDGSSYYGTLAGYDQHMNVVL 42
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 10 KEPLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
K PLD++ L+ + + V L+ RE+RG L YD H+N++L EEV
Sbjct: 3 KRPLDILDQVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEEV 49
>gi|402081161|gb|EJT76306.1| U6 snRNA-associated Sm-like protein LSm5 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 82
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTE 49
>gi|260807635|ref|XP_002598614.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
gi|229283887|gb|EEN54626.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
Length = 87
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 10 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFENTSE 58
>gi|393247655|gb|EJD55162.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 85
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++++RE G L +D +NM+L DV E
Sbjct: 7 PLELIDRCIGSRIWVVMKTEREFTGTLLGFDDFVNMVLEDVTE 49
>gi|296805413|ref|XP_002843531.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238844833|gb|EEQ34495.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 84
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDRCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|326493364|dbj|BAJ85143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 107
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ LS+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 EEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 70
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+L + + +K + + LRGKL ++DQHLN++L D EE+++
Sbjct: 12 NLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILS 50
>gi|326922224|ref|XP_003207351.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Meleagris gallopavo]
gi|363730150|ref|XP_418849.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Gallus
gallus]
Length = 91
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|301630685|ref|XP_002944447.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Xenopus (Silurana) tropicalis]
Length = 81
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|350539912|ref|NP_001232310.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129593|gb|ACH46091.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129594|gb|ACH46092.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129595|gb|ACH46093.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129831|gb|ACH46329.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129908|gb|ACH46406.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
SL + VKL+ D+ +RG L +YD H+N++L + EEV++
Sbjct: 16 SLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMS 54
>gi|6912488|ref|NP_036454.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Homo sapiens]
gi|13384942|ref|NP_079796.1| U6 snRNA-associated Sm-like protein LSm5 [Mus musculus]
gi|114053307|ref|NP_001040018.1| U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|157822947|ref|NP_001100759.1| U6 snRNA-associated Sm-like protein LSm5 [Rattus norvegicus]
gi|197101673|ref|NP_001126628.1| U6 snRNA-associated Sm-like protein LSm5 [Pongo abelii]
gi|383873354|ref|NP_001244745.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|55628382|ref|XP_519030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Pan troglodytes]
gi|73976577|ref|XP_854477.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Canis lupus
familiaris]
gi|149705702|ref|XP_001500867.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Equus
caballus]
gi|291394638|ref|XP_002713789.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296209016|ref|XP_002751358.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Callithrix jacchus]
gi|301772952|ref|XP_002921890.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Ailuropoda melanoleuca]
gi|332242762|ref|XP_003270553.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Nomascus leucogenys]
gi|335305486|ref|XP_003360223.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Sus
scrofa]
gi|344270397|ref|XP_003407031.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Loxodonta africana]
gi|348568734|ref|XP_003470153.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cavia
porcellus]
gi|395831025|ref|XP_003788612.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Otolemur garnettii]
gi|397527112|ref|XP_003833447.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Pan
paniscus]
gi|402863784|ref|XP_003896179.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Papio anubis]
gi|403278350|ref|XP_003930776.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Saimiri
boliviensis boliviensis]
gi|407262510|ref|XP_003946397.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Mus
musculus]
gi|410952602|ref|XP_003982968.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Felis catus]
gi|426227726|ref|XP_004007967.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Ovis aries]
gi|426355879|ref|XP_004045331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Gorilla gorilla gorilla]
gi|426355881|ref|XP_004045332.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Gorilla gorilla gorilla]
gi|10720081|sp|Q9Y4Y9.3|LSM5_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|52783752|sp|P62322.2|LSM5_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|75054789|sp|Q5R628.3|LSM5_PONAB RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|116256439|sp|Q2HJH0.3|LSM5_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|5919151|gb|AAD56229.1|AF182291_1 U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens]
gi|5262860|emb|CAB45868.1| Lsm5 protein [Homo sapiens]
gi|12844520|dbj|BAB26394.1| unnamed protein product [Mus musculus]
gi|12847199|dbj|BAB27475.1| unnamed protein product [Mus musculus]
gi|13543565|gb|AAH05938.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|38512042|gb|AAH61085.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|51105856|gb|EAL24440.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|55732167|emb|CAH92788.1| hypothetical protein [Pongo abelii]
gi|55930921|gb|AAH48459.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|88682880|gb|AAI05405.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119614397|gb|EAW93991.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
gi|124376122|gb|AAI32627.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|124376508|gb|AAI32629.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|148672763|gb|EDL04710.1| mCG13108, isoform CRA_a [Mus musculus]
gi|149033255|gb|EDL88056.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_c [Rattus norvegicus]
gi|208966684|dbj|BAG73356.1| LSM5 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296488471|tpg|DAA30584.1| TPA: U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|312153290|gb|ADQ33157.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|355560708|gb|EHH17394.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|380811262|gb|AFE77506.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|383417167|gb|AFH31797.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|384941550|gb|AFI34380.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|410223678|gb|JAA09058.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410255044|gb|JAA15489.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410354065|gb|JAA43636.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395572|gb|JAA44840.1| Putative u6 snrna-associated sm-like protein [Desmodus rotundus]
gi|440911522|gb|ELR61182.1| U6 snRNA-associated Sm-like protein LSm5 [Bos grunniens mutus]
Length = 91
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|389623205|ref|XP_003709256.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|351648785|gb|EHA56644.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|440486474|gb|ELQ66335.1| hypothetical protein OOW_P131scaffold00400g22 [Magnaporthe oryzae
P131]
Length = 82
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTE 49
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+L + VKLR D +RGKL ++DQHLN++L + EE+
Sbjct: 12 NLGSIVLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEI 48
>gi|145348592|ref|XP_001418730.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578960|gb|ABO97023.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 93
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
A+ ++ P +L+ + ++V ++S+REL G L +D ++NM+L DV E TT E
Sbjct: 7 AANANPSLVLPSELVERCVGSPLWVLMKSERELVGTLRGFDVYVNMVLEDVTEYETTAE 65
>gi|119614396|gb|EAW93990.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
Length = 85
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|147901169|ref|NP_001087187.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus laevis]
gi|51873770|gb|AAH78466.1| MGC85219 protein [Xenopus laevis]
Length = 91
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|449329925|gb|AGE96193.1| small nuclear ribonucleoprotein d2 [Encephalitozoon cuniculi]
Length = 135
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 9 VKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+K PL L+R ++ + + V LRS+R++ G++ AYD+H N+++ D +E+ TT
Sbjct: 18 MKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTT 69
>gi|213982795|ref|NP_001135569.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus (Silurana)
tropicalis]
gi|195539827|gb|AAI68072.1| Unknown (protein for MGC:185877) [Xenopus (Silurana) tropicalis]
Length = 91
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
L+ + VK++ +RE++G L +YDQHLN+IL EE+
Sbjct: 19 LNSSVLVKMKGNREVKGILTSYDQHLNLILEKAEEL 54
>gi|242076520|ref|XP_002448196.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
gi|241939379|gb|EES12524.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
Length = 105
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 9/68 (13%)
Query: 1 MASEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
MA E ++ KE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 52 VEEVVTTV 59
V E+ T V
Sbjct: 61 VREMWTEV 68
>gi|389751535|gb|EIM92608.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 85
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++++RE G L +D +NM+L DV E
Sbjct: 7 PLELIDRCIGSRIWVIMKNEREFTGTLLGFDDFVNMVLEDVTE 49
>gi|344211722|ref|YP_004796042.1| snRNP-like protein [Haloarcula hispanica ATCC 33960]
gi|448666742|ref|ZP_21685387.1| snRNP-like protein [Haloarcula amylolytica JCM 13557]
gi|448688412|ref|ZP_21694245.1| snRNP-like protein [Haloarcula japonica DSM 6131]
gi|343783077|gb|AEM57054.1| snRNP-like protein [Haloarcula hispanica ATCC 33960]
gi|445771873|gb|EMA22929.1| snRNP-like protein [Haloarcula amylolytica JCM 13557]
gi|445779473|gb|EMA30403.1| snRNP-like protein [Haloarcula japonica DSM 6131]
Length = 60
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD++ SL E + V+L+ G+L YDQH+N+++ D
Sbjct: 5 PLDVLEASLGETVTVQLKGGEIFEGELTGYDQHMNLVVED 44
>gi|238006980|gb|ACR34525.1| unknown [Zea mays]
gi|414586341|tpg|DAA36912.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 85
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 9/66 (13%)
Query: 1 MASEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
MA E E+ KE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MADENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 52 VEEVVT 57
V E+ T
Sbjct: 61 VREMWT 66
>gi|430814458|emb|CCJ28305.1| unnamed protein product [Pneumocystis jirovecii]
Length = 50
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI+V ++ D E G L +D ++NM+L DV E
Sbjct: 8 PLELVDKCVGSRIWVVMKGDTEFSGILLGFDDYVNMVLQDVTE 50
>gi|290561451|gb|ADD38126.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ ++ RI++ +++D+E+ G L +D +NM+L DV E +T E
Sbjct: 15 PLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTEYESTPE 63
>gi|290561032|gb|ADD37918.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ ++ RI++ +++D+E+ G L +D +NM+L DV E +T E
Sbjct: 15 PLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTEYESTPE 63
>gi|55377641|ref|YP_135491.1| snRNP-like protein [Haloarcula marismortui ATCC 43049]
gi|448633752|ref|ZP_21674251.1| snRNP-like protein [Haloarcula vallismortis ATCC 29715]
gi|448639871|ref|ZP_21677019.1| snRNP-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|448659277|ref|ZP_21683245.1| snRNP-like protein [Haloarcula californiae ATCC 33799]
gi|448677873|ref|ZP_21689063.1| snRNP-like protein [Haloarcula argentinensis DSM 12282]
gi|55230366|gb|AAV45785.1| snRNP-like protein [Haloarcula marismortui ATCC 43049]
gi|445750443|gb|EMA01881.1| snRNP-like protein [Haloarcula vallismortis ATCC 29715]
gi|445760779|gb|EMA12036.1| snRNP-like protein [Haloarcula californiae ATCC 33799]
gi|445762398|gb|EMA13619.1| snRNP-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|445773548|gb|EMA24581.1| snRNP-like protein [Haloarcula argentinensis DSM 12282]
Length = 60
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD++ SL E + V+L+ G+L YDQH+N+++ D
Sbjct: 5 PLDVLEASLGETVTVQLKGGELFEGELTGYDQHMNLVVED 44
>gi|327292284|ref|XP_003230850.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Anolis carolinensis]
Length = 56
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|321250537|ref|XP_003191841.1| hypothetical protein CGB_B0090W [Cryptococcus gattii WM276]
gi|317458309|gb|ADV20054.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 122
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+L+ + I+V ++++RE G L +D ++NM+L DV+E T ET
Sbjct: 7 PLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET 60
>gi|291226439|ref|XP_002733197.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 91
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 1 MASEEESAVKE--PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MAS + + PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T
Sbjct: 1 MASTTGTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVVEFENT 60
Query: 59 VE 60
E
Sbjct: 61 PE 62
>gi|396458116|ref|XP_003833671.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
gi|312210219|emb|CBX90306.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
Length = 84
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PL+LI + +I+V + +E GKL +D ++NM+L DV E+
Sbjct: 8 PLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEDVTEI 51
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI++ +R+D+E+ G L +D+ +NM+L DV E
Sbjct: 7 PLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTE 49
>gi|357495275|ref|XP_003617926.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519261|gb|AET00885.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 159
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 1 MASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
M EEE + PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T
Sbjct: 63 MNQEEEFNIG-PLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTE 121
Query: 59 VE 60
V
Sbjct: 122 VP 123
>gi|281208052|gb|EFA82230.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 86
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI++ +++D+E G L +D ++N+ L DV E T E
Sbjct: 8 PLELIEKCIGSRIWICMKNDKEFVGTLLGFDTYVNIFLKDVTEYEFTPE 56
>gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi
GB-M1]
gi|19069411|emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi
GB-M1]
Length = 135
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 9 VKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+K PL L+R ++ + + V LRS+R++ G++ AYD+H N+++ D +E+ TT
Sbjct: 18 MKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTT 69
>gi|350297191|gb|EGZ78168.1| U6 snRNA-associated Sm-like protein LSm7 [Neurospora tetrasperma
FGSC 2509]
Length = 82
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+D+RI VK RE+ G L YD +N++L DV+E V
Sbjct: 1 MDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAV 37
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
PL+L+ + RI++ +R+D+E+ G L +D+ +NM+L DV E T
Sbjct: 7 PLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEAT 53
>gi|367041894|ref|XP_003651327.1| hypothetical protein THITE_2111451 [Thielavia terrestris NRRL 8126]
gi|346998589|gb|AEO64991.1| hypothetical protein THITE_2111451 [Thielavia terrestris NRRL 8126]
Length = 155
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
A +E KE + ++ +D+RI VK RE G L YD +N++L DVEEV+
Sbjct: 57 AGSKERPKKENILDLKKYMDQRITVKFNGGREATGVLKGYDALMNLVLDDVEEVL 111
>gi|332374080|gb|AEE62181.1| unknown [Dendroctonus ponderosae]
Length = 89
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
A S+ PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E TT E
Sbjct: 3 AMPVSSSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYETTPE 61
>gi|116780023|gb|ABK21523.1| unknown [Picea sitchensis]
Length = 108
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 13 TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEV 71
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S+ + VKL+ ++E+RG L +YDQH+N++L D E+
Sbjct: 12 SVGSLVLVKLKGNKEVRGYLKSYDQHMNLVLSDSVEI 48
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI++ +R+D+E+ G L +D+ +NM+L DV E
Sbjct: 7 PLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTE 49
>gi|357126948|ref|XP_003565149.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Brachypodium distachyon]
gi|357126950|ref|XP_003565150.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 2 [Brachypodium distachyon]
Length = 105
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ LS+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 11 EEEEFSTGPLSVLMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 68
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
lamblia ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
lamblia ATCC 50803]
Length = 126
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ E + PL L++ SL++R+ V L+++ + G L ++D+H+N+IL + EE
Sbjct: 44 TPEYTEFSNPLYLLKTSLEDRVSVLLQNNSSITGLLASFDEHMNLILINAEET 96
>gi|427785997|gb|JAA58450.1| Putative u6 snrna-associated sm-like protein [Rhipicephalus
pulchellus]
Length = 90
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + +I++ ++SD+E+ G L +D +NM+L DV E +T E
Sbjct: 13 PLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPE 61
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
P D +R LD+ + V+L++ + LRG+L ++D HLN++L D VEID+++ + R
Sbjct: 3 PHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDD------CVEIDEDSEVRLGR 56
Query: 72 V 72
V
Sbjct: 57 V 57
>gi|346470761|gb|AEO35225.1| hypothetical protein [Amblyomma maculatum]
Length = 90
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + +I++ ++SD+E+ G L +D +NM+L DV E +T E
Sbjct: 13 PLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPE 61
>gi|345567853|gb|EGX50755.1| hypothetical protein AOL_s00054g841 [Arthrobotrys oligospora ATCC
24927]
Length = 81
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + +I+V ++S++E G L +D ++NM+L DV E
Sbjct: 7 PLELVDKCVGSKIWVVMKSEKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|17560310|ref|NP_506870.1| Protein LSM-5 [Caenorhabditis elegans]
gi|3876465|emb|CAB03013.1| Protein LSM-5 [Caenorhabditis elegans]
Length = 91
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V +++D+E+ G L +D ++NM+L DV E
Sbjct: 14 PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE 56
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ E + PL L++ SL++RI V L+++ + G L ++D+H+N+IL + EE
Sbjct: 50 TPEYTEFSNPLYLLKTSLEDRISVLLQNNSSITGLLASFDEHMNLILINAEET 102
>gi|169236227|ref|YP_001689427.1| small nuclear ribonucleoprotein [Halobacterium salinarum R1]
gi|167727293|emb|CAP14079.1| RNA-binding protein Lsm [Halobacterium salinarum R1]
Length = 60
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V+L+ E G L YDQH+N+++
Sbjct: 5 PLDVLEESLEETVTVRLKDGDEFTGVLTGYDQHMNVVI 42
>gi|91078636|ref|XP_968589.1| PREDICTED: similar to Lsm5 protein [Tribolium castaneum]
gi|270004060|gb|EFA00508.1| hypothetical protein TcasGA2_TC003372 [Tribolium castaneum]
Length = 89
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
S+ PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E TT E
Sbjct: 8 SSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYETTPE 61
>gi|109077185|ref|XP_001093268.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5 [Macaca
mulatta]
gi|355747728|gb|EHH52225.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca fascicularis]
gi|355749905|gb|EHH54243.1| hypothetical protein EGM_15034 [Macaca fascicularis]
Length = 91
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 1 MASEEESAVKE--PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MA++ + + PL+ + + RI++ ++SD+E+ G L +D +NM+L DV E T
Sbjct: 1 MAADATTNPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEIT 60
Query: 59 VE 60
E
Sbjct: 61 PE 62
>gi|336463585|gb|EGO51825.1| hypothetical protein NEUTE1DRAFT_53111 [Neurospora tetrasperma FGSC
2508]
Length = 144
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+D+RI VK RE+ G L YD +N++L DV+E V E ++ T
Sbjct: 63 MDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVRDEEGNETT 108
>gi|256073118|ref|XP_002572879.1| hypothetical protein [Schistosoma mansoni]
gi|360045255|emb|CCD82803.1| hypothetical protein Smp_129760 [Schistosoma mansoni]
Length = 87
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + +I++ +++D+E+ G L +D ++NM+L DV E T +
Sbjct: 10 PLELVDKCIGSKIHIIMKNDKEMVGTLLGFDSYVNMVLADVTEFEFTAQ 58
>gi|442748493|gb|JAA66406.1| Putative u6 snrna-associated sm-like protein [Ixodes ricinus]
Length = 90
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + +I++ ++SD+E+ G L +D +NM+L DV E +T E
Sbjct: 13 PLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPE 61
>gi|355691296|gb|EHH26481.1| hypothetical protein EGK_16467 [Macaca mulatta]
Length = 91
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 1 MASEEESAVKE--PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MA++ + + PL+ + + RI++ ++SD+E+ G L +D +NM+L DV E T
Sbjct: 1 MAADATTNPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEIT 60
Query: 59 VE 60
E
Sbjct: 61 PE 62
>gi|324529784|gb|ADY49042.1| U6 snRNA-associated Sm-like protein LSm5 [Ascaris suum]
Length = 94
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI+V ++ ++E+ G L +D ++NM+L DV E TV+
Sbjct: 17 PLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVD 65
>gi|321472276|gb|EFX83246.1| hypothetical protein DAPPUDRAFT_230679 [Daphnia pulex]
Length = 89
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E +T E
Sbjct: 10 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVSEFESTPE 58
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL++I S+ +I V + +D+E +G L +D ++NM+L +VEE
Sbjct: 23 PLEIIDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEE 65
>gi|242086617|ref|XP_002439141.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
gi|190688742|gb|ACE86405.1| putative small nuclear ribonucleoprotein D2 [Sorghum bicolor]
gi|241944426|gb|EES17571.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
Length = 104
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 10 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 67
>gi|170593543|ref|XP_001901523.1| U6 snRNA-associated Sm-like protein LSm5 [Brugia malayi]
gi|312071704|ref|XP_003138731.1| hypothetical protein LOAG_03146 [Loa loa]
gi|158590467|gb|EDP29082.1| U6 snRNA-associated Sm-like protein LSm5, putative [Brugia
malayi]
gi|402593447|gb|EJW87374.1| small nuclear ribonucleoprotein [Wuchereria bancrofti]
Length = 91
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI+V ++ ++E+ G L +D ++NM+L DV E TV+
Sbjct: 14 PLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVD 62
>gi|322791094|gb|EFZ15676.1| hypothetical protein SINV_04240 [Solenopsis invicta]
Length = 83
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPE 62
>gi|154303271|ref|XP_001552043.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347841641|emb|CCD56213.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Botryotinia
fuckeliana]
Length = 84
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDVIE 49
>gi|15790491|ref|NP_280315.1| snRNP-like protein [Halobacterium sp. NRC-1]
gi|10580991|gb|AAG19795.1| snRNP homolog [Halobacterium sp. NRC-1]
Length = 69
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V+L+ E G L YDQH+N+++
Sbjct: 14 PLDVLEESLEETVTVRLKDGDEFTGVLTGYDQHMNVVI 51
>gi|156053688|ref|XP_001592770.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980]
gi|154703472|gb|EDO03211.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980 UF-70]
Length = 84
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I+V ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDVIE 49
>gi|449283162|gb|EMC89854.1| U6 snRNA-associated Sm-like protein LSm5, partial [Columba livia]
Length = 82
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|410909464|ref|XP_003968210.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Takifugu rubripes]
gi|47225103|emb|CAF98730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 88
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+ S + PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 1 MAATNPSQLL-PLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEVTPE 59
>gi|393912158|gb|EFO25335.2| hypothetical protein LOAG_03146 [Loa loa]
Length = 111
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI+V ++ ++E+ G L +D ++NM+L DV E TV+
Sbjct: 34 PLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVD 82
>gi|332026604|gb|EGI66713.1| U6 snRNA-associated Sm-like protein LSm5 [Acromyrmex echinatior]
Length = 91
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPE 62
>gi|307178103|gb|EFN66930.1| U6 snRNA-associated Sm-like protein LSm5 [Camponotus floridanus]
Length = 91
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPE 62
>gi|313586491|gb|ADR71256.1| U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
Length = 87
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAE 58
>gi|226506222|ref|NP_001147167.1| LOC100280773 [Zea mays]
gi|195607934|gb|ACG25797.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|195622778|gb|ACG33219.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|238013460|gb|ACR37765.1| unknown [Zea mays]
gi|413942324|gb|AFW74973.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413942325|gb|AFW74974.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
gi|413942326|gb|AFW74975.1| Small nuclear ribonucleoprotein Sm D2 isoform 3 [Zea mays]
Length = 104
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 10 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 67
>gi|307197393|gb|EFN78665.1| U6 snRNA-associated Sm-like protein LSm5 [Harpegnathos saltator]
Length = 91
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPE 62
>gi|255573198|ref|XP_002527528.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus
communis]
gi|223533078|gb|EEF34837.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus
communis]
Length = 103
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 8 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 66
>gi|405117379|gb|AFR92154.1| hypothetical protein CNAG_00016 [Cryptococcus neoformans var.
grubii H99]
Length = 49
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + I+V ++++RE G L +D ++NM+L DV+E
Sbjct: 7 PLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKE 49
>gi|391338472|ref|XP_003743582.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Metaseiulus occidentalis]
Length = 83
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI++ +++D+EL G L +D ++NM+L DV E
Sbjct: 6 PLELIDKCIGSRIHIIMKNDKELVGTLLGFDDYVNMVLEDVTE 48
>gi|448534872|ref|XP_003870851.1| hypothetical protein CORT_0G00330 [Candida orthopsilosis Co
90-125]
gi|380355207|emb|CCG24723.1| hypothetical protein CORT_0G00330 [Candida orthopsilosis]
Length = 96
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52
PL++I S+ +++ + + SD+E RG L +D ++NM+L DV
Sbjct: 20 PLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDYVNMVLEDV 60
>gi|393795269|ref|ZP_10378633.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 81
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ S+ K PL ++ S +++ V+L+++ E +GK+ D ++N+I+ D EE+
Sbjct: 3 QTSSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEEL 53
>gi|302348366|ref|YP_003816004.1| small nucleolar RNP protein Sm [Acidilobus saccharovorans 345-15]
gi|302328778|gb|ADL18973.1| Putative small nucleolar RNP protein Sm [Acidilobus
saccharovorans 345-15]
Length = 92
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
MA+ +E V PL +R ++D +IYVKL+ E G+L D +N++L + EV
Sbjct: 1 MAASQEKRVVNPLRYLRDAVDSQIYVKLKDGTEYVGQLLVTDSTMNLVLDNSVEV 55
>gi|356524941|ref|XP_003531086.1| PREDICTED: uncharacterized protein LOC100306359 [Glycine max]
gi|255628297|gb|ACU14493.1| unknown [Glycine max]
Length = 87
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 58
>gi|156555736|ref|XP_001602011.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Nasonia
vitripennis]
Length = 93
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 16 PLELVDKCIGSRIHIIMKNDKEIVGTLKGFDDFVNMLLDDVTESEATPE 64
>gi|346325284|gb|EGX94881.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 83
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ ++E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|414586344|tpg|DAA36915.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 102
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 8 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 65
>gi|212722184|ref|NP_001131740.1| uncharacterized protein LOC100193106 [Zea mays]
gi|194692396|gb|ACF80282.1| unknown [Zea mays]
gi|195629728|gb|ACG36505.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|413918934|gb|AFW58866.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413918935|gb|AFW58867.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
Length = 105
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 9/68 (13%)
Query: 1 MASEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
MA E ++ KE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 52 VEEVVTTV 59
V E+ T +
Sbjct: 61 VREMWTEI 68
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 29/39 (74%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
S+++ + +KL+ ++ +RG L +DQH+N++L EE+++
Sbjct: 13 SINKTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILS 51
>gi|156843124|ref|XP_001644631.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
gi|156115278|gb|EDO16773.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
Length = 86
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
E+ V PL++I ++++ +++ L+S+RE GKL +D +N+I+ D E +T
Sbjct: 3 ETEVILPLEIIDKTINQPVWIILQSNREFTGKLVGFDDFVNVIIEDAVEYIT 54
>gi|159042090|ref|YP_001541342.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920925|gb|ABW02352.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 79
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+ VKLR +RG L YDQH+N++L D EE++
Sbjct: 21 VLVKLRDGTTIRGTLKNYDQHMNLLLDDTEEII 53
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
L ++ S+ + V+LR+ + LRG L YDQH+N++L D +E++
Sbjct: 7 LKILSKSVGSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELI 50
>gi|297604251|ref|NP_001055168.2| Os05g0314100 [Oryza sativa Japonica Group]
gi|54291778|gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa
Japonica Group]
gi|215768148|dbj|BAH00377.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768714|dbj|BAH00943.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196532|gb|EEC78959.1| hypothetical protein OsI_19425 [Oryza sativa Indica Group]
gi|222631079|gb|EEE63211.1| hypothetical protein OsJ_18021 [Oryza sativa Japonica Group]
gi|255676234|dbj|BAF17082.2| Os05g0314100 [Oryza sativa Japonica Group]
Length = 105
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 11 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 68
>gi|428181287|gb|EKX50151.1| small nuclear ribonucleo protein polypeptide G [Guillardia theta
CCMP2712]
Length = 78
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+D+R+ +KL ++R + G L YDQ +N++L +EVVT +
Sbjct: 13 MDKRVTLKLNANRNITGILRGYDQFMNLVLDHTQEVVTPTQ 53
>gi|340343951|ref|ZP_08667083.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519092|gb|EGP92815.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 81
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
+ S+ K PL ++ S +++ V+L+++ E +GK+ D ++N+I+ D EE
Sbjct: 3 QTSSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEE 52
>gi|327304591|ref|XP_003236987.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326459985|gb|EGD85438.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 84
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + +I++ ++ D+E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSKIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTE 49
>gi|224068340|ref|XP_002302713.1| predicted protein [Populus trichocarpa]
gi|224128478|ref|XP_002320342.1| predicted protein [Populus trichocarpa]
gi|118481477|gb|ABK92681.1| unknown [Populus trichocarpa]
gi|222844439|gb|EEE81986.1| predicted protein [Populus trichocarpa]
gi|222861115|gb|EEE98657.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71
>gi|400596491|gb|EJP64262.1| putative U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Beauveria
bassiana ARSEF 2860]
Length = 82
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ ++E G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|297737605|emb|CBI26806.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 8 NEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 66
>gi|449468622|ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
gi|449522508|ref|XP_004168268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
Length = 87
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 58
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
S+D+ + +KL+ + +RG L +DQH+N++L EE+ E D ++ IV
Sbjct: 9 SIDQVVLIKLKGSKTIRGTLLGFDQHMNLLLDSSEEI--PAEGDSKSLGTIV 58
>gi|357521399|ref|XP_003630988.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|355525010|gb|AET05464.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
Length = 104
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 9 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 67
>gi|213404126|ref|XP_002172835.1| U6 snRNP-associated protein Lsm7 [Schizosaccharomyces japonicus
yFS275]
gi|212000882|gb|EEB06542.1| U6 snRNP-associated protein Lsm7 [Schizosaccharomyces japonicus
yFS275]
Length = 112
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
LDL R D+RI KL R++ G L YDQ +N++L DVEE
Sbjct: 26 LDLSRYQ-DQRIQAKLTGGRQISGVLKGYDQLMNLVLDDVEE 66
>gi|58258057|ref|XP_566441.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57222578|gb|AAW40622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 216
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+L+ + I+V ++++RE G L +D ++NM+L DV+E T ET
Sbjct: 7 PLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET 60
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|414883666|tpg|DAA59680.1| TPA: small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 78
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
S+++ + +KL+ ++ +RG L +DQH+N++L EE+ E D ++ IV
Sbjct: 13 SINQVVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEI--PAEGDSKSLGSIV 62
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|242043028|ref|XP_002459385.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
gi|241922762|gb|EER95906.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
Length = 262
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|226492272|ref|NP_001148524.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|195620004|gb|ACG31832.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
Length = 263
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|226496711|ref|NP_001140478.1| uncharacterized protein LOC100272538 [Zea mays]
gi|194699658|gb|ACF83913.1| unknown [Zea mays]
gi|195606200|gb|ACG24930.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|414592013|tpg|DAA42584.1| TPA: Small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|432929710|ref|XP_004081239.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Oryzias
latipes]
Length = 91
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 1 MASEEESAVKE--PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
MA+ + + + PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T
Sbjct: 1 MAATQGTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEIT 60
Query: 59 VE 60
E
Sbjct: 61 PE 62
>gi|388507376|gb|AFK41754.1| unknown [Lotus japonicus]
Length = 87
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MAS + P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 1 MASNPSQLL--PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 58
>gi|225424416|ref|XP_002285043.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 107
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 12 NEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 70
>gi|242024699|ref|XP_002432764.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus
humanus corporis]
gi|212518249|gb|EEB20026.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus
humanus corporis]
Length = 110
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
EEE PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V+E+ T
Sbjct: 10 EEEEFSTGPLSVLSQSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWT 65
>gi|224059779|ref|XP_002299989.1| predicted protein [Populus trichocarpa]
gi|224103927|ref|XP_002313247.1| predicted protein [Populus trichocarpa]
gi|118484238|gb|ABK93999.1| unknown [Populus trichocarpa]
gi|222847247|gb|EEE84794.1| predicted protein [Populus trichocarpa]
gi|222849655|gb|EEE87202.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 11 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 59
>gi|378725612|gb|EHY52071.1| U6 snRNA-associated Sm-like protein LSm5 [Exophiala dermatitidis
NIH/UT8656]
Length = 84
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ D++ G L +D ++NM+L DV E
Sbjct: 7 PLELIDKCVGSRIWVVMKGDKDFAGTLLGFDDYVNMVLEDVIE 49
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 32/44 (72%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
P DL+ + +++ ++L+++ +RGK+ ++D H+N++L + EE+
Sbjct: 6 PFDLLNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEEL 49
>gi|388498294|gb|AFK37213.1| unknown [Medicago truncatula]
Length = 87
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 58
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
E+E K PL ++ ++ + ++++ R++R+L ++ A+D+H NMIL DV E T
Sbjct: 19 EKEEFEKGPLSVLTKAVRSNAQVFINCRNNRKLLARVKAFDRHFNMILEDVREFWT 74
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEIDDETYEE 68
++ R+ V ++ R+L GK A+D+H+N++LGD EE + + + +T EE
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTSEE 63
>gi|324546471|gb|ADY49713.1| Small nuclear ribonucleoprotein Sm D2, partial [Ascaris suum]
Length = 120
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
A E+E PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V+E+ T
Sbjct: 18 AKEQEEFNVGPLSILTQSVKNNAQVMINCRNNRKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|134105981|ref|XP_778001.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260704|gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
PL+L+ + I+V ++++RE G L +D ++NM+L DV+E T ET
Sbjct: 7 PLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET 60
>gi|413942323|gb|AFW74972.1| hypothetical protein ZEAMMB73_294095 [Zea mays]
Length = 116
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 10 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 67
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL + + +KL+ + +RG LH +DQH+N++L D E+
Sbjct: 13 SLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLEDSVEI 49
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
PL++I S+ I V + +D+E GKL +D +NM+L DV E+ + V+ D
Sbjct: 4 PLEIIDKSIGHEIRVLMTNDKEFTGKLVGFDDFVNMVLEDVREIDSDVKSD 54
>gi|351727138|ref|NP_001238430.1| uncharacterized protein LOC100500203 [Glycine max]
gi|255629692|gb|ACU15195.1| unknown [Glycine max]
Length = 117
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71
>gi|407919352|gb|EKG12602.1| hypothetical protein MPH_10268 [Macrophomina phaseolina MS6]
Length = 81
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+D+ I VK RE+ G L YDQ +N++L DV+EV+ DDE E
Sbjct: 1 MDKGISVKFNGGREVTGTLKGYDQLMNLVLDDVKEVMR----DDEGNE 44
>gi|403169358|ref|XP_003328805.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167924|gb|EFP84386.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 125
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
LDL + + D+R+ VK RE+ G L YDQ LN+++ +VEE++
Sbjct: 36 LDLAKFA-DKRVRVKFMGGREITGILKGYDQLLNLVMDEVEEIL 78
>gi|449457536|ref|XP_004146504.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
gi|449499984|ref|XP_004160970.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
Length = 107
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 12 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 70
>gi|356513032|ref|XP_003525218.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Glycine max]
Length = 108
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71
>gi|197129592|gb|ACH46090.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+++ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKQIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE 47
>gi|302921652|ref|XP_003053324.1| hypothetical protein NECHADRAFT_59475 [Nectria haematococca mpVI
77-13-4]
gi|256734264|gb|EEU47611.1| hypothetical protein NECHADRAFT_59475 [Nectria haematococca mpVI
77-13-4]
Length = 133
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
LDL + +D++I VK RE++G L YD +N++L DV EVV E ++ T
Sbjct: 47 LDLAKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNEST 98
>gi|320592276|gb|EFX04715.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 80
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + RI+V ++ +RE G L +D ++NM+L +V E
Sbjct: 7 PLELIDKCVGSRIWVIMKGEREFSGTLVGFDDYVNMVLEEVTE 49
>gi|317420150|emb|CBN82186.1| U6 snRNA-associated Sm-like protein LSm5 [Dicentrarchus labrax]
Length = 91
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|359806642|ref|NP_001241022.1| uncharacterized protein LOC100793233 [Glycine max]
gi|255633912|gb|ACU17317.1| unknown [Glycine max]
Length = 108
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71
>gi|229366148|gb|ACQ58054.1| U6 snRNA-associated Sm-like protein LSm5 [Anoplopoma fimbria]
Length = 91
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|452980574|gb|EME80335.1| hypothetical protein MYCFIDRAFT_89886 [Pseudocercospora fijiensis
CIRAD86]
Length = 81
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + I+V ++ D+E G L +D +NM+L DV E
Sbjct: 7 PLELIDRCVGSPIWVIMKGDKEFSGTLQGFDDFVNMVLEDVTE 49
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEIDDETYEE 68
++ R+ V ++ R+L GK A+D+H+N++LGD EE + + + +T EE
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE 63
>gi|357521397|ref|XP_003630987.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|355525009|gb|AET05463.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|388506390|gb|AFK41261.1| unknown [Medicago truncatula]
Length = 108
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71
>gi|348503608|ref|XP_003439356.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Oreochromis niloticus]
gi|348503610|ref|XP_003439357.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Oreochromis niloticus]
Length = 88
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 11 PLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 59
>gi|226467448|emb|CAX69600.1| U6 snRNA-associated Sm-like protein LSm5 [Schistosoma japonicum]
Length = 87
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D ++NM+L DV E T +
Sbjct: 10 PLELVDKCIGSRIHIIMKNDKEMVGTLLGFDGYVNMVLVDVTEFEFTAQ 58
>gi|448729283|ref|ZP_21711600.1| small nuclear ribonucleoprotein, lsm family [Halococcus
saccharolyticus DSM 5350]
gi|445795230|gb|EMA45759.1| small nuclear ribonucleoprotein, lsm family [Halococcus
saccharolyticus DSM 5350]
Length = 79
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL----GDVEEVVTTVEIDDETYE 67
PLD++ +L + + V+L+ G L YDQH+N++L GD E T E+ ET E
Sbjct: 6 PLDVLEATLGDSVAVRLKDGEIYTGSLAGYDQHMNVVLEPASGDAEP-PTPGEVGVETVE 64
>gi|395517528|ref|XP_003762928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Sarcophilus harrisii]
Length = 140
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+V P +L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 59 SVSAPPELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 111
>gi|384247738|gb|EIE21224.1| small nuclear ribonucleo protein Sm D2 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ S+ + ++ + R++R+L G++ A+D+H NMIL +V+E+ T +
Sbjct: 16 EEELFRTGPLSVLTTSVKSNSQVLINCRNNRKLLGRVKAFDRHCNMILENVKEMWTEI 73
>gi|326521412|dbj|BAJ96909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|297725409|ref|NP_001175068.1| Os07g0166600 [Oryza sativa Japonica Group]
gi|255677541|dbj|BAH93796.1| Os07g0166600 [Oryza sativa Japonica Group]
Length = 261
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV--VTTVEIDDETYEE 68
++ R+ V ++ R+L GK A+D+H+N++LGD EE + + + +T EE
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEE 63
>gi|126336758|ref|XP_001371876.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Monodelphis domestica]
Length = 166
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|448578387|ref|ZP_21643822.1| snRNP-like protein [Haloferax larsenii JCM 13917]
gi|448592536|ref|ZP_21651643.1| snRNP-like protein [Haloferax elongans ATCC BAA-1513]
gi|445726928|gb|ELZ78544.1| snRNP-like protein [Haloferax larsenii JCM 13917]
gi|445731541|gb|ELZ83125.1| snRNP-like protein [Haloferax elongans ATCC BAA-1513]
Length = 75
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SLDE + V L+ G L YDQH+N++L
Sbjct: 5 PLDVLEESLDEPVTVTLKDGSAYYGVLAGYDQHMNVVL 42
>gi|254586103|ref|XP_002498619.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
gi|238941513|emb|CAR29686.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
Length = 86
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
PL++I ++ + +++ L+S+RE G L +D +N+I+ D +EV ++ D
Sbjct: 8 PLEIIDKTVGQPVWIVLQSNREFTGTLIGFDDFVNVIVEDAKEVTVGADLQD 59
>gi|213403610|ref|XP_002172577.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
gi|212000624|gb|EEB06284.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
Length = 79
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
PL+LI + ++V ++ ++E G L +D ++NM+L DV E+ T + ++ E
Sbjct: 7 PLELIDKCIGSNLWVIMKGEKEFVGTLVGFDDYVNMVLKDVTEIDTITNVTEQHKE 62
>gi|110668788|ref|YP_658599.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Haloquadratum walsbyi DSM 16790]
gi|109626535|emb|CAJ52998.1| RNA-binding protein Lsm [Haloquadratum walsbyi DSM 16790]
Length = 77
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ +LD+ + + L+ G L YDQH+N +L
Sbjct: 5 PLDVLEAALDDTVTITLKDGSAYHGTLAGYDQHMNAVL 42
>gi|192910682|gb|ACF06449.1| small nuclear ribonucleoprotein-like protein [Elaeis guineensis]
Length = 105
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 11 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 68
>gi|448727785|ref|ZP_21710134.1| Like-Sm ribonucleoprotein core [Halococcus morrhuae DSM 1307]
gi|445789771|gb|EMA40450.1| Like-Sm ribonucleoprotein core [Halococcus morrhuae DSM 1307]
Length = 78
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ +L + + V+L+ G+L YDQHLN++L
Sbjct: 5 PLDVLEANLGDGVAVRLKDGATYTGELGGYDQHLNVVL 42
>gi|449544087|gb|EMD35061.1| hypothetical protein CERSUDRAFT_85794 [Ceriporiopsis
subvermispora B]
Length = 93
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
LDL + ++ERI VK RE+ G L YDQ LN++L +VEE + T
Sbjct: 10 LDLAKY-VNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVEEQLQT 54
>gi|448611893|ref|ZP_21662323.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mucosum ATCC BAA-1512]
gi|445742654|gb|ELZ94148.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mucosum ATCC BAA-1512]
Length = 76
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SLDE + V L+ G L YDQH+N++L
Sbjct: 5 PLDVLEASLDEPVTVLLKDGNAYYGVLAGYDQHMNVVL 42
>gi|413918936|gb|AFW58868.1| hypothetical protein ZEAMMB73_850141 [Zea mays]
Length = 104
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 10 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 67
>gi|346977239|gb|EGY20691.1| hypothetical protein VDAG_10320 [Verticillium dahliae VdLs.17]
Length = 140
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+D++I VK RE+ G L YD +N++L DVEEV+ DDE E
Sbjct: 60 MDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMR----DDEGKE 103
>gi|302419873|ref|XP_003007767.1| RH73529p [Verticillium albo-atrum VaMs.102]
gi|261353418|gb|EEY15846.1| RH73529p [Verticillium albo-atrum VaMs.102]
Length = 141
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+D++I VK RE+ G L YD +N++L DVEEV+ DDE E
Sbjct: 61 MDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMR----DDEGKE 104
>gi|154426284|ref|NP_001093908.1| U6 snRNA-associated Sm-like protein LSm5 [Danio rerio]
gi|152012711|gb|AAI50415.1| Zgc:171959 protein [Danio rerio]
Length = 91
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 10 KEPLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
K P+D++ L+ + + + L+ RE++G L YD H+N++L EE+V
Sbjct: 8 KRPMDILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIV 55
>gi|440634700|gb|ELR04619.1| hypothetical protein GMDG_06901 [Geomyces destructans 20631-21]
Length = 137
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+ ++E KE LDL + +D+RI VK RE+ G L YD +N++L DV+EV+
Sbjct: 40 SQQQERPKKENILDLSKY-MDKRITVKFNGGREVTGALKGYDALMNLVLDDVQEVL 94
>gi|292656841|ref|YP_003536738.1| snRNP-like protein [Haloferax volcanii DS2]
gi|433417270|ref|ZP_20404659.1| snRNP-like protein [Haloferax sp. BAB2207]
gi|448290842|ref|ZP_21481987.1| snRNP-like protein [Haloferax volcanii DS2]
gi|448546215|ref|ZP_21626467.1| snRNP-like protein [Haloferax sp. ATCC BAA-646]
gi|448548214|ref|ZP_21627558.1| snRNP-like protein [Haloferax sp. ATCC BAA-645]
gi|448557401|ref|ZP_21632674.1| snRNP-like protein [Haloferax sp. ATCC BAA-644]
gi|448565365|ref|ZP_21636232.1| snRNP-like protein [Haloferax prahovense DSM 18310]
gi|448568277|ref|ZP_21637854.1| snRNP-like protein [Haloferax lucentense DSM 14919]
gi|448583315|ref|ZP_21646671.1| snRNP-like protein [Haloferax gibbonsii ATCC 33959]
gi|448600783|ref|ZP_21656162.1| snRNP-like protein [Haloferax alexandrinus JCM 10717]
gi|448606036|ref|ZP_21658615.1| snRNP-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|448622918|ref|ZP_21669567.1| snRNP-like protein [Haloferax denitrificans ATCC 35960]
gi|291371013|gb|ADE03240.1| snRNP homolog [Haloferax volcanii DS2]
gi|432200109|gb|ELK56223.1| snRNP-like protein [Haloferax sp. BAB2207]
gi|445577895|gb|ELY32315.1| snRNP-like protein [Haloferax volcanii DS2]
gi|445703058|gb|ELZ54994.1| snRNP-like protein [Haloferax sp. ATCC BAA-646]
gi|445714296|gb|ELZ66060.1| snRNP-like protein [Haloferax sp. ATCC BAA-644]
gi|445714916|gb|ELZ66674.1| snRNP-like protein [Haloferax sp. ATCC BAA-645]
gi|445715109|gb|ELZ66865.1| snRNP-like protein [Haloferax prahovense DSM 18310]
gi|445727227|gb|ELZ78841.1| snRNP-like protein [Haloferax lucentense DSM 14919]
gi|445729544|gb|ELZ81139.1| snRNP-like protein [Haloferax gibbonsii ATCC 33959]
gi|445734796|gb|ELZ86352.1| snRNP-like protein [Haloferax alexandrinus JCM 10717]
gi|445739453|gb|ELZ90960.1| snRNP-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445753426|gb|EMA04843.1| snRNP-like protein [Haloferax denitrificans ATCC 35960]
Length = 76
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SLDE + V L+ G L YDQH+N++L
Sbjct: 5 PLDVLEASLDEPVTVLLKDGNAYFGVLAGYDQHMNVVL 42
>gi|356512167|ref|XP_003524792.1| PREDICTED: uncharacterized protein LOC100527929 [Glycine max]
gi|255633598|gb|ACU17158.1| unknown [Glycine max]
Length = 87
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D + NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAE 58
>gi|261245080|ref|NP_001140132.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221220780|gb|ACM09051.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221222120|gb|ACM09721.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|225715330|gb|ACO13511.1| U6 snRNA-associated Sm-like protein LSm5 [Esox lucius]
Length = 91
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 62
>gi|408404417|ref|YP_006862400.1| snRNP Sm-like protein [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365013|gb|AFU58743.1| putative snRNP Sm-like protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 145
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
K PL ++ +++ ++ V+L+S+ E +G+++ D ++N+IL D EE
Sbjct: 72 KRPLSTLQRAINRKVAVRLKSEIEYKGRMNNVDSYMNLILTDAEE 116
>gi|393219456|gb|EJD04943.1| U6 snRNA-associated Sm-like protein LSm7 [Fomitiporia
mediterranea MF3/22]
Length = 134
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ERI VK RE+ G L YDQ LN++L DVEE
Sbjct: 57 MNERIRVKFTGGREVTGILKGYDQLLNLVLDDVEE 91
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
S+++ + +KL+ + +RG L +DQH+N++L EE+ T
Sbjct: 13 SINQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPT 51
>gi|254166807|ref|ZP_04873661.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|254167437|ref|ZP_04874289.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|289596330|ref|YP_003483026.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623700|gb|EDY36263.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|197624417|gb|EDY36978.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|289534117|gb|ADD08464.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 72
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL ++ L++RI + L+ +R L GKL YD ++NM+L D EE
Sbjct: 4 PLKMLENFLNKRISLLLKDNRVLEGKLVGYDDYMNMVLMDTEE 46
>gi|448734412|ref|ZP_21716638.1| small nuclear ribonucleoprotein, lsm family [Halococcus
salifodinae DSM 8989]
gi|445800460|gb|EMA50815.1| small nuclear ribonucleoprotein, lsm family [Halococcus
salifodinae DSM 8989]
Length = 79
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ +L E + V+L+ G L YDQH+N++L
Sbjct: 6 PLDVLEATLGESVAVRLKDGEIYTGSLAGYDQHMNVVL 43
>gi|13541906|ref|NP_111594.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Thermoplasma volcanium GSS1]
gi|14325338|dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 71
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
P+ L+ S+++R+ + L+ +R L G L YD ++NM+L DV+E
Sbjct: 4 PMKLLEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDE 46
>gi|435850907|ref|YP_007312493.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
gi|433661537|gb|AGB48963.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
Length = 71
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLN 46
PLD++ +L+ + V+L+ RE RG L YD H+N
Sbjct: 3 NRPLDILNNALNTPVIVRLKGAREFRGNLQGYDVHMN 39
>gi|409043237|gb|EKM52720.1| hypothetical protein PHACADRAFT_261323 [Phanerochaete carnosa
HHB-10118-sp]
Length = 94
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
LDL + ++ERI VK RE+ G L +DQ LN++L DVEE + T
Sbjct: 10 LDLAKY-VNERIRVKFTGGREVTGVLKGFDQLLNLVLDDVEEQLHT 54
>gi|387915912|gb|AFK11565.1| U6 snRNA-associated Sm-like protein LSm5 [Callorhinchus milii]
Length = 90
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 13 PLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 61
>gi|389848158|ref|YP_006350397.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|448618366|ref|ZP_21666603.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|388245464|gb|AFK20410.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|445746737|gb|ELZ98195.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
Length = 76
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SLDE + V L+ G L YDQH+N++L
Sbjct: 5 PLDVLEASLDEPVTVLLKDGNAYFGVLAGYDQHMNVVL 42
>gi|193582383|ref|XP_001951255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Acyrthosiphon pisum]
Length = 91
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E +T E
Sbjct: 14 PLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMLLEDVTEYESTPE 62
>gi|46130650|ref|XP_389105.1| hypothetical protein FG08929.1 [Gibberella zeae PH-1]
gi|408391559|gb|EKJ70933.1| hypothetical protein FPSE_08901 [Fusarium pseudograminearum
CS3096]
Length = 131
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
LDL + +D++I VK RE++G L YD +N++L DV EVV E ++ T
Sbjct: 45 LDLGKY-MDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNEST 96
>gi|145343983|ref|XP_001416522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576747|gb|ABO94815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EE V PL ++ S+ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T V
Sbjct: 9 EENEFVTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEV 66
>gi|118431273|ref|YP_874866.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|116062596|dbj|BAF34765.1| putative small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 94
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
MA++ + P ++ L+ +IYVKL+ E GKL A D +N+IL D EV
Sbjct: 1 MAAKGGKQLVNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVA 56
>gi|225433436|ref|XP_002285668.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Vitis vinifera]
gi|297741927|emb|CBI33362.3| unnamed protein product [Vitis vinifera]
Length = 87
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSE 58
>gi|116208252|ref|XP_001229935.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88184016|gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 103
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
PL L++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHN 87
>gi|110739170|dbj|BAF01501.1| Sm-like protein [Arabidopsis thaliana]
Length = 88
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAE 58
>gi|367010514|ref|XP_003679758.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
gi|359747416|emb|CCE90547.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
Length = 85
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
PL++I ++ + +++ L+S+RE G L +D +N+I+ D E V + +DE
Sbjct: 8 PLEIIDKTISQPVWIVLQSNREFTGTLVGFDDFVNVIIEDAVEWVYNSKFEDE 60
>gi|226504910|ref|NP_001152573.1| SAD1 [Zea mays]
gi|226528898|ref|NP_001149693.1| SAD1 [Zea mays]
gi|242090409|ref|XP_002441037.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|194697624|gb|ACF82896.1| unknown [Zea mays]
gi|195606068|gb|ACG24864.1| SAD1 [Zea mays]
gi|195609070|gb|ACG26365.1| SAD1 [Zea mays]
gi|195629524|gb|ACG36403.1| SAD1 [Zea mays]
gi|195638676|gb|ACG38806.1| SAD1 [Zea mays]
gi|195657645|gb|ACG48290.1| SAD1 [Zea mays]
gi|241946322|gb|EES19467.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|413945216|gb|AFW77865.1| SAD1 isoform 1 [Zea mays]
gi|413945217|gb|AFW77866.1| SAD1 isoform 2 [Zea mays]
gi|413949491|gb|AFW82140.1| SAD1 [Zea mays]
Length = 88
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 11 PSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAE 59
>gi|443924506|gb|ELU43510.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 129
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
DERI VK R++ G L YDQ LN++L DV+E
Sbjct: 46 DERIRVKFTGGRQVTGVLKGYDQLLNLVLDDVQE 79
>gi|115463665|ref|NP_001055432.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|357133866|ref|XP_003568543.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Brachypodium distachyon]
gi|54287604|gb|AAV31348.1| putative snRNA associated protein [Oryza sativa Japonica Group]
gi|113578983|dbj|BAF17346.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|215765216|dbj|BAG86913.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196723|gb|EEC79150.1| hypothetical protein OsI_19819 [Oryza sativa Indica Group]
gi|222622229|gb|EEE56361.1| hypothetical protein OsJ_05491 [Oryza sativa Japonica Group]
Length = 89
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 11 PSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAE 59
>gi|297792081|ref|XP_002863925.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
gi|297309760|gb|EFH40184.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
Length = 88
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAE 58
>gi|15239727|ref|NP_199698.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like protein-like [Arabidopsis thaliana]
gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis thaliana]
gi|106879147|gb|ABF82603.1| At5g48870 [Arabidopsis thaliana]
gi|332008352|gb|AED95735.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|386305005|gb|AFJ05005.1| hypothetical protein [Arabidopsis thaliana]
Length = 88
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAE 58
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
L+ +YVKL+ ++G L ++DQHLN++L + EE+
Sbjct: 18 LNASVYVKLKGGEGVKGVLKSFDQHLNLVLENAEELT 54
>gi|242023983|ref|XP_002432410.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517833|gb|EEB19672.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 91
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E +T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYESTPE 62
>gi|367050014|ref|XP_003655386.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL
8126]
gi|347002650|gb|AEO69050.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL
8126]
Length = 116
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
PL L++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHN 87
>gi|385804295|ref|YP_005840695.1| snRNP [Haloquadratum walsbyi C23]
gi|339729787|emb|CCC41068.1| RNA-binding protein Lsm [Haloquadratum walsbyi C23]
Length = 77
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ +LD+ + + L+ G L YDQH+N +L
Sbjct: 5 PLDVLEAALDDTVTITLKDGSAYYGTLAGYDQHMNAVL 42
>gi|161527598|ref|YP_001581424.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407461586|ref|YP_006772903.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|160338899|gb|ABX11986.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407045208|gb|AFS79961.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 81
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 34/51 (66%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ ++ K PL ++ S +++ V+L+++ E +GK+ D ++N+I+ D EE+
Sbjct: 3 QSNSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEEL 53
>gi|300176167|emb|CBK23478.2| unnamed protein product [Blastocystis hominis]
Length = 234
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V +R +R L G L A+D+H+N+ILGD EE
Sbjct: 5 VNYRMRVVIRENRVLVGTLMAFDKHMNLILGDCEE 39
>gi|126697412|gb|ABO26663.1| small nuclear ribonucleoprotein D2-like protein [Haliotis discus
discus]
Length = 119
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E EPL ++ S+ + ++ + R++++L ++ A+D+H NM+L +V+E+ T V
Sbjct: 19 AREQEEFNTEPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEV 78
>gi|407463901|ref|YP_006774783.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047089|gb|AFS81841.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 81
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 34/51 (66%)
Query: 5 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
+ ++ K PL ++ S +++ V+L+++ E +GK+ D ++N+I+ D EE+
Sbjct: 3 QSNSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEEL 53
>gi|354459632|pdb|3SWN|A Chain A, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459635|pdb|3SWN|D Chain D, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459638|pdb|3SWN|P Chain P, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459641|pdb|3SWN|S Chain S, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 82
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
PL+LI + ++V ++S+RE G L +D ++N++L DV E T + ++ E
Sbjct: 9 PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 64
>gi|451848655|gb|EMD61960.1| hypothetical protein COCSADRAFT_147219 [Cochliobolus sativus
ND90Pr]
gi|451998469|gb|EMD90933.1| hypothetical protein COCHEDRAFT_1021722 [Cochliobolus
heterostrophus C5]
Length = 86
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PL+LI + +I+V + +E GKL +D ++NM+L +V E+
Sbjct: 8 PLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLENVTEI 51
>gi|118388573|ref|XP_001027383.1| Sm protein [Tetrahymena thermophila]
gi|89309153|gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLI--RLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+ EE+ + P L+ + + ++ + LR++R++ K+ A+D+H+NM+L +V E+ T V
Sbjct: 8 TPEETFSQGPFSLLFKAVKANTQVLIALRNNRKMLAKVRAFDRHMNMVLENVLEMWTEV 66
>gi|367001532|ref|XP_003685501.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
gi|357523799|emb|CCE63067.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
Length = 86
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
PL++I ++++ +++ L+S+RE G L +D +N+I+ D E +T DD+
Sbjct: 9 PLEIIDKTINQNVWIILQSNREFTGTLIGFDDFVNVIIEDAVEYITRNNDDDD 61
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>gi|168009596|ref|XP_001757491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691185|gb|EDQ77548.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 86
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 11 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSE 59
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
S+++ + +KL+ + +RG L +DQH+N++L EE+ VE + ++ IV
Sbjct: 13 SINQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEI--PVEGNSKSLGTIV 62
>gi|358058374|dbj|GAA95893.1| hypothetical protein E5Q_02551 [Mixia osmundae IAM 14324]
Length = 197
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV----TTVEIDDETYEEI-VRVCCN 75
D+RI VK RE+ G L DQ +NM+L DV+E+V T +D Y + + V
Sbjct: 114 DQRIRVKFLGGREVTGVLKGSDQLMNMVLDDVQELVRDPDTLAPLDPAQYRSLGLTVIRG 173
Query: 76 LKILLLN 82
I+++N
Sbjct: 174 TAIVVIN 180
>gi|19113165|ref|NP_596373.1| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626712|sp|O42978.2|LSM5_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|4539252|emb|CAA16849.2| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe]
Length = 80
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
PL+LI + ++V ++S+RE G L +D ++N++L DV E T + ++ E
Sbjct: 7 PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S+ + +K + LRGKL ++DQHLN++L D EE+
Sbjct: 12 SIGRLVLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEI 48
>gi|402587026|gb|EJW80962.1| small nuclear ribonucleoprotein Sm D2 [Wuchereria bancrofti]
Length = 111
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 9/64 (14%)
Query: 3 SEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
++EE A KE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+
Sbjct: 2 TQEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 61
Query: 54 EVVT 57
E+ T
Sbjct: 62 EMWT 65
>gi|340959200|gb|EGS20381.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 592
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
EE PL L++ ++ ++ + +RS R+L ++ A+D+H NMIL +V+E+ T +
Sbjct: 502 EEWEMANGPLSLLQTAVRSHTQVLISVRSGRKLLARVKAFDRHCNMILENVKEMWTETPV 561
Query: 62 DD 63
+
Sbjct: 562 TN 563
>gi|171685514|ref|XP_001907698.1| hypothetical protein [Podospora anserina S mat+]
gi|170942718|emb|CAP68371.1| unnamed protein product [Podospora anserina S mat+]
Length = 116
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
PL L++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHN 87
>gi|367028268|ref|XP_003663418.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila
ATCC 42464]
gi|347010687|gb|AEO58173.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila
ATCC 42464]
Length = 116
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
PL L++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSLLQTAVRSHAQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVHN 87
>gi|388501344|gb|AFK38738.1| unknown [Medicago truncatula]
Length = 97
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 1 MASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
M EEE + PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T
Sbjct: 1 MNQEEEFNI-GPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTE 59
Query: 59 V 59
V
Sbjct: 60 V 60
>gi|116779179|gb|ABK21171.1| unknown [Picea sitchensis]
gi|116779217|gb|ABK21184.1| unknown [Picea sitchensis]
gi|224285498|gb|ACN40469.1| unknown [Picea sitchensis]
Length = 85
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSE 58
>gi|170594601|ref|XP_001902052.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain. [Brugia malayi]
gi|158590996|gb|EDP29611.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain., putative [Brugia malayi]
Length = 121
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 9/64 (14%)
Query: 3 SEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
++EE A KE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+
Sbjct: 12 TQEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71
Query: 54 EVVT 57
E+ T
Sbjct: 72 EMWT 75
>gi|312078721|ref|XP_003141861.1| small Nuclear Ribonucleoprotein family member [Loa loa]
gi|307762971|gb|EFO22205.1| small nuclear ribonucleoprotein Sm D2 [Loa loa]
Length = 121
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 9/64 (14%)
Query: 3 SEEESAVKE-------PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVE 53
++EE A KE PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+
Sbjct: 12 TQEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71
Query: 54 EVVT 57
E+ T
Sbjct: 72 EMWT 75
>gi|168044533|ref|XP_001774735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673890|gb|EDQ60406.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 103
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 17 PLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 67
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 78
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
S+++ + +KL+ ++ +RG L +DQH+N++L EE+ E D + IV
Sbjct: 13 SINQVVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEI--PAEGDSKGLGTIV 62
>gi|359477805|ref|XP_003632024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Vitis vinifera]
Length = 88
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|257388144|ref|YP_003177917.1| Sm ribonucleoprotein-like protein [Halomicrobium mukohataei DSM
12286]
gi|257170451|gb|ACV48210.1| Like-Sm ribonucleoprotein core [Halomicrobium mukohataei DSM
12286]
Length = 60
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD++ SL E + V L+ G+L YDQH+N+++ D
Sbjct: 5 PLDVLEASLGETVTVHLKGGELYEGELSGYDQHMNLVIED 44
>gi|449295361|gb|EMC91383.1| hypothetical protein BAUCODRAFT_127288 [Baudoinia compniacensis
UAMH 10762]
Length = 83
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + I+V ++ D+E G L +D +NM+L DV E
Sbjct: 7 PLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTE 49
>gi|399218089|emb|CCF74976.1| unnamed protein product [Babesia microti strain RI]
Length = 87
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M++ E PL L+ + R+++ +++D+EL G L +D ++NM DV+E + +
Sbjct: 1 MSTIEGGPCYLPLALVDKCIGNRMWIIMKNDKELDGILCGFDDYMNMASKDVKEYTYSPQ 60
>gi|145489729|ref|XP_001430866.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397967|emb|CAK63468.1| unnamed protein product [Paramecium tetraurelia]
Length = 77
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PL L+ ++ R+++ ++ DRE G L +D NM+L +V E+
Sbjct: 6 PLGLLDKAISSRVWILMKDDREFEGTLRGFDDFFNMVLENVIEL 49
>gi|169601618|ref|XP_001794231.1| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
gi|160705976|gb|EAT88882.2| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
Length = 86
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
PL+LI + +I+V + +E GKL +D ++NM+L +V E+
Sbjct: 8 PLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEI 51
>gi|453082042|gb|EMF10090.1| like-Sm ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 81
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + I+V ++ D+E G L +D +NM+L DV E
Sbjct: 7 PLELIDRCVGSPIWVIMKGDKEFSGTLMGFDDFVNMVLEDVTE 49
>gi|374327713|ref|YP_005085913.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
gi|356642982|gb|AET33661.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
Length = 57
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 26 VKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
VKLR E+RG L ++DQH+N++L D EE++
Sbjct: 3 VKLRDSHEIRGILRSFDQHVNLLLEDAEEII 33
>gi|118577120|ref|YP_876863.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118195641|gb|ABK78559.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 106
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
+S K PL ++ S + + V+L+++ E +GK+ D ++N+I+ D EE
Sbjct: 29 QSNAKRPLTALQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAEE 77
>gi|110760718|ref|XP_001120607.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Apis
mellifera]
gi|340715932|ref|XP_003396461.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Bombus
terrestris]
gi|350396810|ref|XP_003484674.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Bombus
impatiens]
gi|380019757|ref|XP_003693769.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Apis
florea]
gi|383866113|ref|XP_003708516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Megachile rotundata]
Length = 91
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTESEATPE 62
>gi|198425042|ref|XP_002126895.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm5
[Ciona intestinalis]
Length = 89
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
MA+ + PL+L+ + +I++ ++S++E+ G L +D +NM+L DV E +T E
Sbjct: 1 MANAANPSQLLPLELVDKCIGSKIHIIMKSEKEIVGTLLGFDDFVNMVLEDVTEYESTSE 60
>gi|157107685|ref|XP_001649890.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108879502|gb|EAT43727.1| AAEL004848-PA [Aedes aegypti]
Length = 92
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTSE 62
>gi|392563452|gb|EIW56631.1| U6 snRNA-associated Sm-like protein LSm7 [Trametes versicolor
FP-101664 SS1]
Length = 94
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
LDL + ++ERI VK RE+ G L YDQ LN++L +V+E + T + + T
Sbjct: 10 LDLAKY-VNERIRVKFTGGREVTGILKGYDQLLNLVLDEVQENLQTPDGESTT 61
>gi|259487148|tpe|CBF85589.1| TPA: small nuclear ribonucleoprotein SmD2, putative
(AFU_orthologue; AFUA_5G12910) [Aspergillus nidulans
FGSC A4]
Length = 113
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL L++ ++ + ++ + LRS+R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 34 PLSLLQTAVRTNTQVLISLRSNRKLLARVKAFDRHSNMVLENVKEMWT 81
>gi|448738899|ref|ZP_21720920.1| Like-Sm ribonucleoprotein core [Halococcus thailandensis JCM
13552]
gi|445801285|gb|EMA51629.1| Like-Sm ribonucleoprotein core [Halococcus thailandensis JCM
13552]
Length = 78
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ +L + + V+L+ G+L YDQHLN++L
Sbjct: 5 PLDVLEANLGDGVAVRLKDGVTYTGELGGYDQHLNVVL 42
>gi|388583928|gb|EIM24229.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 111
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL +++ S+ + +I V LR++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 29 PLSVLQQSVKNNTQILVSLRNNRKLLARVKAFDRHSNMVLENVKEMWT 76
>gi|401625995|gb|EJS43964.1| lsm5p [Saccharomyces arboricola H-6]
Length = 93
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
PL++I ++++R+ + L+S+RE G L +D +N+IL D E + ++ +DET E V
Sbjct: 8 PLEVIDKTINQRVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWL--IDPEDETRNEKV 64
>gi|344228576|gb|EGV60462.1| hypothetical protein CANTEDRAFT_116517 [Candida tenuis ATCC
10573]
Length = 97
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL++I S+ + + V L +D+E GKL +D +N++L DV E
Sbjct: 26 PLEIIDKSIGKVVTVLLTTDKEFTGKLVGFDDFVNVVLEDVTE 68
>gi|157103848|ref|XP_001648155.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108869330|gb|EAT33555.1| AAEL014169-PA [Aedes aegypti]
Length = 92
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTSE 62
>gi|330827552|ref|XP_003291838.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
gi|325077961|gb|EGC31640.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
Length = 78
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 14 DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
DL RL LD+++ VKL +R ++G L +D +N+ L D EVV+ E
Sbjct: 10 DLTRL-LDKKLNVKLNGNRTVQGILRGFDTFMNIALKDTVEVVSPTE 55
>gi|302771065|ref|XP_002968951.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
gi|302816639|ref|XP_002989998.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300142309|gb|EFJ09011.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300163456|gb|EFJ30067.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
Length = 85
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E
Sbjct: 10 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|158296145|ref|XP_316632.4| AGAP006604-PA [Anopheles gambiae str. PEST]
gi|157016373|gb|EAA10979.4| AGAP006604-PA [Anopheles gambiae str. PEST]
Length = 94
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTPE 62
>gi|170055785|ref|XP_001863736.1| Lsm5 protein [Culex quinquefasciatus]
gi|167875611|gb|EDS38994.1| Lsm5 protein [Culex quinquefasciatus]
Length = 92
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E T E
Sbjct: 14 PLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTPE 62
>gi|154288569|ref|XP_001545066.1| hypothetical protein BC1G_16433 [Botryotinia fuckeliana B05.10]
gi|347835616|emb|CCD50188.1| hypothetical protein [Botryotinia fuckeliana]
Length = 140
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D+++ VK R ++G L YD +N++L DVEE +T DDE E
Sbjct: 55 LDLGKY-MDKQVTVKFNGGRHVKGTLKGYDALMNLVLDDVEEKLT----DDEGTE 104
>gi|156031032|ref|XP_001584841.1| hypothetical protein SS1G_14124 [Sclerotinia sclerotiorum 1980]
gi|154700515|gb|EDO00254.1| hypothetical protein SS1G_14124 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 138
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D+++ VK R ++G L YD +N++L DVEE +T DDE E
Sbjct: 53 LDLGKY-MDKQVTVKFNGGRHVKGTLKGYDALMNLVLDDVEEKLT----DDEGNE 102
>gi|452837763|gb|EME39705.1| hypothetical protein DOTSEDRAFT_75376 [Dothistroma septosporum
NZE10]
Length = 80
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + I+V ++ D+E G L +D +NM+L DV E
Sbjct: 7 PLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTE 49
>gi|413949490|gb|AFW82139.1| SAD1 [Zea mays]
Length = 137
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 60 PSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAE 108
>gi|339233484|ref|XP_003381859.1| putative LSM domain protein [Trichinella spiralis]
gi|339261308|ref|XP_003367972.1| putative LSM domain protein [Trichinella spiralis]
gi|316964809|gb|EFV49750.1| putative LSM domain protein [Trichinella spiralis]
gi|316979279|gb|EFV62087.1| putative LSM domain protein [Trichinella spiralis]
Length = 92
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + ++++ ++ ++EL G L +D ++N++L DV E TT E
Sbjct: 15 PLELIDKCIGSKLWIVMKGNKELVGTLLGFDDYVNIVLEDVIEYETTTE 63
>gi|70996088|ref|XP_752799.1| small nuclear ribonucleoprotein (LSM7) [Aspergillus fumigatus
Af293]
gi|44890026|emb|CAF32144.1| u6 snrna-associated sm-like protein, putative [Aspergillus
fumigatus]
gi|66850434|gb|EAL90761.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
fumigatus Af293]
gi|159131553|gb|EDP56666.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
fumigatus A1163]
Length = 134
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + ++D T
Sbjct: 53 LDLSKY-MDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRGKSLNDIT 104
>gi|159474956|ref|XP_001695589.1| Sm-E protein [Chlamydomonas reinhardtii]
gi|158275600|gb|EDP01376.1| Sm-E protein [Chlamydomonas reinhardtii]
Length = 95
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
P +LI + +++V ++ D+E+ G L +D ++NM+L DV E+ T E
Sbjct: 18 PSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDTPE 66
>gi|262089301|gb|ACY24522.1| putative LSM domain protein [uncultured crenarchaeote 57a5]
Length = 104
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
L++ S+ + + VKL+ R +RGK+ +D+ +N+++ D E++
Sbjct: 25 ATQLLQESIGKNVLVKLKGRRSVRGKIKGFDKQMNIVITDATEII 69
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
S+++ + +KL+ ++ +RG L +DQH+N++L EE+
Sbjct: 13 SINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEI 49
>gi|330793131|ref|XP_003284639.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
gi|325085438|gb|EGC38845.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
Length = 116
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 10 KEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
K PL ++ S++ ++ + +R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 21 KGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVP 73
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V ++ R+L GK A+D+H+N +LGD EE
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNFVLGDTEE 47
>gi|345005070|ref|YP_004807923.1| Sm ribonucleoprotein-like protein [halophilic archaeon DL31]
gi|344320696|gb|AEN05550.1| Like-Sm ribonucleoprotein core [halophilic archaeon DL31]
Length = 79
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V L+ G L YDQH+N++L
Sbjct: 5 PLDVLEESLEEPVTVHLKDGDAFYGTLSGYDQHMNVVL 42
>gi|302837345|ref|XP_002950232.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
gi|300264705|gb|EFJ48900.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
Length = 95
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET-YEEIV 70
P +LI + R++V ++ D+E+ G L +D ++NM+L DV E+ + E T ++I+
Sbjct: 18 PSELIDRCIGSRMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDSPEGKKLTKLDQIL 77
Query: 71 RVCCNLKILLLNFK 84
N+ IL+ K
Sbjct: 78 LNGNNIAILVPGGK 91
>gi|225437378|ref|XP_002268945.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 104
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+E E PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 9 NEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 67
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
S+++ + +KL+ + +RG L +DQH+N++L EE+ VE + T IV
Sbjct: 13 SINKVVLIKLKGGKAIRGNLLGFDQHMNLLLESSEEI--PVEGETRTLGTIV 62
>gi|400600902|gb|EJP68570.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 255
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
LDL + +D++I VK RE+ G L +D +N++L DV+E V E ++ T
Sbjct: 169 LDLTKY-MDKQITVKFNGGREVMGTLKGFDALMNLVLDDVQETVRDEEGNEST 220
>gi|125979619|ref|XP_001353842.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|194752281|ref|XP_001958451.1| GF23512 [Drosophila ananassae]
gi|195171277|ref|XP_002026433.1| GL15546 [Drosophila persimilis]
gi|54640826|gb|EAL29577.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|190625733|gb|EDV41257.1| GF23512 [Drosophila ananassae]
gi|194111339|gb|EDW33382.1| GL15546 [Drosophila persimilis]
Length = 91
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E
Sbjct: 15 PLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTE 57
>gi|444708206|gb|ELW49298.1| Ectonucleoside triphosphate diphosphohydrolase 1 [Tupaia chinensis]
Length = 1349
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 19/21 (90%)
Query: 51 DVEEVVTTVEIDDETYEEIVR 71
DVEE VTT+EID+ETYEEI +
Sbjct: 1078 DVEETVTTIEIDEETYEEIYK 1098
>gi|340975579|gb|EGS22694.1| hypothetical protein CTHT_0011670 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 148
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+D+RI VK RE G L YD +N++L DVEE++ DDE E
Sbjct: 69 MDKRITVKFNGGREATGVLKGYDALMNLVLDDVEELLR----DDEGNE 112
>gi|321466061|gb|EFX77059.1| hypothetical protein DAPPUDRAFT_305959 [Daphnia pulex]
Length = 234
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
L+ R+ V L+ R G A+D+H+N+ILGD EE
Sbjct: 13 LNYRVRVTLQDSRTFIGTFKAFDKHMNLILGDCEE 47
>gi|308503579|ref|XP_003113973.1| CRE-SNR-4 protein [Caenorhabditis remanei]
gi|308261358|gb|EFP05311.1| CRE-SNR-4 protein [Caenorhabditis remanei]
Length = 118
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 AKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
>gi|341904454|gb|EGT60287.1| CBN-SNR-4 protein [Caenorhabditis brenneri]
Length = 118
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 AKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
>gi|328865149|gb|EGG13535.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 98
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+LI + RI++ +++++E G L +D ++N+ L DV E T E
Sbjct: 20 PLELIEKCIGSRIWICMKNEKEFVGTLLGFDTYVNIFLKDVIEYENTPE 68
>gi|17558868|ref|NP_506004.1| Protein SNR-4 [Caenorhabditis elegans]
gi|2833296|sp|Q18786.1|SMD2_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|3875190|emb|CAB01413.1| Protein SNR-4 [Caenorhabditis elegans]
Length = 118
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 2 ASEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 AKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
>gi|209877963|ref|XP_002140423.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556029|gb|EEA06074.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 111
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 12 PLDLIR--LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL L+ + + +I V R++R++ G++ A+D+H N++L DV E+ T
Sbjct: 22 PLSLLSECVRTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDVREIWT 69
>gi|195011763|ref|XP_001983306.1| GH15826 [Drosophila grimshawi]
gi|195125111|ref|XP_002007026.1| GI12608 [Drosophila mojavensis]
gi|195374668|ref|XP_002046125.1| GJ12731 [Drosophila virilis]
gi|193896788|gb|EDV95654.1| GH15826 [Drosophila grimshawi]
gi|193918635|gb|EDW17502.1| GI12608 [Drosophila mojavensis]
gi|194153283|gb|EDW68467.1| GJ12731 [Drosophila virilis]
Length = 91
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E
Sbjct: 15 PLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTE 57
>gi|154279158|ref|XP_001540392.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412335|gb|EDN07722.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 244
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL + ++ R+ V L R++ G++ A+D+H+N++L D EE
Sbjct: 21 PLTVPANQINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEE 63
>gi|398394357|ref|XP_003850637.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici
IPO323]
gi|339470516|gb|EGP85613.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici
IPO323]
Length = 81
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+LI + I+V ++ D+E G L +D +NM+L DV E
Sbjct: 7 PLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTE 49
>gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
gi|48430441|gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
P+ ++ SL++++ + L+ +R L G L YD+++NM L D EE
Sbjct: 5 PMKMLEESLNKKVSLLLKDNRVLEGTLAGYDEYMNMTLDDAEE 47
>gi|336363390|gb|EGN91783.1| hypothetical protein SERLA73DRAFT_148178 [Serpula lacrymans var.
lacrymans S7.3]
Length = 92
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
LDL + + +ERI VK RE+ G L YDQ LN++L +VEE + E
Sbjct: 10 LDLSKYA-NERIRVKFTGGREVVGILKGYDQLLNLVLDEVEEQINEPE 56
>gi|21358059|ref|NP_648022.1| CG6610, isoform A [Drosophila melanogaster]
gi|442630491|ref|NP_001261461.1| CG6610, isoform B [Drosophila melanogaster]
gi|442630493|ref|NP_001261462.1| CG6610, isoform C [Drosophila melanogaster]
gi|194867419|ref|XP_001972067.1| GG15317 [Drosophila erecta]
gi|195337817|ref|XP_002035522.1| GM14749 [Drosophila sechellia]
gi|195492179|ref|XP_002093879.1| GE21536 [Drosophila yakuba]
gi|195588132|ref|XP_002083812.1| GD13931 [Drosophila simulans]
gi|7295386|gb|AAF50703.1| CG6610, isoform A [Drosophila melanogaster]
gi|21064593|gb|AAM29526.1| RE60135p [Drosophila melanogaster]
gi|190653850|gb|EDV51093.1| GG15317 [Drosophila erecta]
gi|194128615|gb|EDW50658.1| GM14749 [Drosophila sechellia]
gi|194179980|gb|EDW93591.1| GE21536 [Drosophila yakuba]
gi|194195821|gb|EDX09397.1| GD13931 [Drosophila simulans]
gi|220950876|gb|ACL87981.1| CG6610-PA [synthetic construct]
gi|220959480|gb|ACL92283.1| CG6610-PA [synthetic construct]
gi|440215357|gb|AGB94156.1| CG6610, isoform B [Drosophila melanogaster]
gi|440215358|gb|AGB94157.1| CG6610, isoform C [Drosophila melanogaster]
Length = 91
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E
Sbjct: 15 PLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTE 57
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ + L+ R G A+D+H+NMILGD EE
Sbjct: 13 INYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEE 47
>gi|301098772|ref|XP_002898478.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
gi|262104903|gb|EEY62955.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
Length = 106
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+ + K+P LDL + +D+ + VK RE+ G L YDQ +N++L D E +
Sbjct: 5 GASGGGSRKDPILDLAKY-IDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDCVEFLRDPS 63
Query: 61 ----IDDETYEEIVRVCCNLKILLLN 82
I DET + + VC ++L++
Sbjct: 64 DEYRITDETRKVGLVVCRGTSVMLVS 89
>gi|195427721|ref|XP_002061925.1| GK17260 [Drosophila willistoni]
gi|194158010|gb|EDW72911.1| GK17260 [Drosophila willistoni]
Length = 91
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + RI++ +++D+E+ G L +D +NM+L DV E
Sbjct: 15 PLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTE 57
>gi|76802788|ref|YP_330883.1| snRNP-like protein [Natronomonas pharaonis DSM 2160]
gi|76558653|emb|CAI50245.1| RNA-binding protein Lsm [Natronomonas pharaonis DSM 2160]
Length = 61
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ +L ++V L+ G L YDQH+N++L
Sbjct: 5 PLDVLEETLGAEVHVTLKGGETYEGTLSGYDQHMNLVL 42
>gi|254167717|ref|ZP_04874567.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
gi|197623245|gb|EDY35810.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
Length = 53
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
++ ++E RG L YDQHLN++L +VEE++
Sbjct: 1 MKGNKEYRGVLDGYDQHLNLVLKNVEEIING 31
>gi|225704950|gb|ACO08321.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R+++EL G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKELLGRVKAFDRHCNMVLENVKEMWT 75
>gi|429964879|gb|ELA46877.1| hypothetical protein VCUG_01651 [Vavraia culicis 'floridensis']
Length = 92
Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
+E+E K LD ++ + V LRS+R+L G + D H NMIL DV E+ T
Sbjct: 2 TEDEKKDKLALDFLKNIKNCPCIVNLRSNRKLCGIVRVIDHHFNMILTDVTEIRKT 57
>gi|17544592|ref|NP_502034.1| Protein LSM-7 [Caenorhabditis elegans]
gi|3881724|emb|CAA93428.1| Protein LSM-7 [Caenorhabditis elegans]
Length = 104
Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 1 MASEEESAVKEPL-DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
M+ +E KE + DL R LD+ I VK + RE G L +DQ LNM+L D E
Sbjct: 1 MSKDEGKRKKESVVDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCRE 54
>gi|50306997|ref|XP_453476.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642610|emb|CAH00572.1| KLLA0D09284p [Kluyveromyces lactis]
Length = 110
Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
P+ LIR S+ +R + + LR++ +L ++ ++D+H NM+L +V+E+ T
Sbjct: 33 PMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEIWT 80
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ + L+ R G A+D+H+NMILGD EE
Sbjct: 11 INYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEE 45
>gi|403280870|ref|XP_003931930.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 212
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 79
>gi|294882885|ref|XP_002769869.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus
marinus ATCC 50983]
gi|239873682|gb|EER02587.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus
marinus ATCC 50983]
Length = 110
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
PL L+ + +E ++ + R++R++ G++ A+D+H NM+L +V E+ T V
Sbjct: 24 PLSLLTKACEENSQVLINCRNNRKILGRVKAFDRHFNMVLENVRELWTEV 73
>gi|169601382|ref|XP_001794113.1| hypothetical protein SNOG_03555 [Phaeosphaeria nodorum SN15]
gi|160705922|gb|EAT88760.2| hypothetical protein SNOG_03555 [Phaeosphaeria nodorum SN15]
Length = 214
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 15 LIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ S++ R+ V L+ R++ G++ A+D+H+N++L D EE
Sbjct: 11 MVSKSINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEE 50
>gi|392577759|gb|EIW70888.1| hypothetical protein TREMEDRAFT_29158 [Tremella mesenterica DSM
1558]
Length = 85
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + I+V ++++RE G L +D ++NM+L DV+E
Sbjct: 7 PLELVDRCIGSPIHVIMKNEREFTGTLMGFDDYVNMVLRDVKE 49
>gi|353237783|emb|CCA69748.1| probable small nuclear ribonucleoprotein chain D2 [Piriformospora
indica DSM 11827]
Length = 122
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
A EE + PL +++ S+ +I + LR++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 30 ALEEHEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHSNMVLENVKEMWT 87
>gi|448458646|ref|ZP_21596312.1| Like-Sm ribonucleoprotein core [Halorubrum lipolyticum DSM 21995]
gi|445809158|gb|EMA59205.1| Like-Sm ribonucleoprotein core [Halorubrum lipolyticum DSM 21995]
Length = 80
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V L+ G L YDQH+N+++
Sbjct: 5 PLDVLEASLEEPVTVHLKDGTTYYGVLAGYDQHMNVVI 42
>gi|145349929|ref|XP_001419379.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579610|gb|ABO97672.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 100
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE----IDDETYEE 68
LDL R +D + VKL RE+ G L YDQ LN++L + E + E I DET
Sbjct: 8 LDLARF-IDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISDETRAL 66
Query: 69 IVRVCCNLKILLLN 82
+ VC +++++
Sbjct: 67 GLLVCRGTSVMVVS 80
>gi|320590837|gb|EFX03280.1| small nuclear ribonucleoprotein sm d2 [Grosmannia clavigera
kw1407]
Length = 116
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDD 63
PL +++ ++ ++ + +RS+R+L ++ A+D+H NMIL +V+E+ T + +
Sbjct: 34 PLSILQTAVRTHTQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVTN 87
>gi|296808563|ref|XP_002844620.1| U6 snRNA binding protein [Arthroderma otae CBS 113480]
gi|238844103|gb|EEQ33765.1| U6 snRNA binding protein [Arthroderma otae CBS 113480]
Length = 155
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
++E KE LDL + +D+ + VK RE+ G L YDQ +N++L DV+E +
Sbjct: 57 GQQQEKPKKENILDLTKY-MDKEVNVKFNGGREITGVLKGYDQLMNLVLDDVKETM 111
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
SL + VKL+ ++ +RG L +YD H+N++L + EE+
Sbjct: 18 SLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEI 54
>gi|242773724|ref|XP_002478297.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
stipitatus ATCC 10500]
gi|218721916|gb|EED21334.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
stipitatus ATCC 10500]
Length = 144
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 3 SEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 61
+++E KE LDL + +D+ + VK RE+ G L YDQ +N++L DV+E ++
Sbjct: 48 NQQEKPKKENILDLTKY-MDKEVNVKFNGGREVSGILKGYDQLMNLVLDDVKE-----KM 101
Query: 62 DDETYEEIVR 71
DE+ E R
Sbjct: 102 RDESGNETTR 111
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+ + +R+ ++L GK+ A+D+H NMIL +V+E+ T +
Sbjct: 51 VLINVRNSKKLLGKVKAFDRHFNMILENVKEIWTEIP 87
>gi|222480457|ref|YP_002566694.1| Like-Sm ribonucleoprotein core [Halorubrum lacusprofundi ATCC
49239]
gi|222453359|gb|ACM57624.1| Like-Sm ribonucleoprotein core [Halorubrum lacusprofundi ATCC
49239]
Length = 80
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V L+ G L YDQH+N+++
Sbjct: 5 PLDVLEASLEEPVTVHLKDGTTYYGILAGYDQHMNIVI 42
>gi|443703701|gb|ELU01136.1| hypothetical protein CAPTEDRAFT_149444 [Capitella teleta]
Length = 118
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
E+E PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 21 EQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 78
>gi|406861450|gb|EKD14504.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 133
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+D++I VK RE+ G L YD +N++L DV+EV+
Sbjct: 54 MDKKITVKFTGGREVTGTLKGYDALMNLVLDDVDEVL 90
>gi|402217994|gb|EJT98072.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EE + PL +++ S+ +I + LR++R+L ++ A+D+H NM+L +V+E+ T V
Sbjct: 21 EEYEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHTNMVLENVKEMWTEV 78
>gi|150400725|ref|YP_001324491.1| like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
gi|150013428|gb|ABR55879.1| Like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
Length = 71
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
+ PLD + S++ + VKL+ + ++G+L AYD HLN+ L
Sbjct: 5 QRPLDALGKSINTNVLVKLKDGQTVKGRLKAYDLHLNVAL 44
>gi|50787671|emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 3 SEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+EE+ + PL L+ ++ +I V R++R+L + A+D+H+NM+L +V E+ T
Sbjct: 19 PQEETITEGPLSLLTKAVKTNCQILVNCRNNRKLLARCKAFDRHMNMVLENVCEMWT 75
>gi|365987129|ref|XP_003670396.1| hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS
421]
gi|343769166|emb|CCD25153.1| hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS
421]
Length = 88
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
PL++I ++++ +++ L+S RE G L +D +N+I+ D E V E +DE
Sbjct: 9 PLEVIDKTINQPVWIILQSQREFTGTLIGFDDFVNVIIEDAVEWVLNEEGEDE 61
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
SL + VKL+ ++ +RG L +YD H+N++L + EE++
Sbjct: 12 SLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIM 49
>gi|378730773|gb|EHY57232.1| small nuclear ribonucleoprotein [Exophiala dermatitidis NIH/UT8656]
Length = 138
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D++I VK RE+ G L YDQ +N++L DV+E + DDE E
Sbjct: 52 LDLGKY-VDKQITVKFNGGREIVGTLKGYDQLMNLVLDDVKETMR----DDEGNE 101
>gi|297618799|ref|YP_003706904.1| small nuclear riboprotein-like protein [Methanococcus voltae A3]
gi|297377776|gb|ADI35931.1| Like-Sm ribonucleoprotein core [Methanococcus voltae A3]
Length = 69
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
+ PLD + S++ I V L+ +E++G+L AYD H+N+ L
Sbjct: 4 TQRPLDALGKSINTNITVFLKDGKEIKGRLKAYDLHMNVAL 44
>gi|159041439|ref|YP_001540691.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920274|gb|ABW01701.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 86
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
M + E +PL + + +++ + VKL++ R L G L DQ +N++L D E E
Sbjct: 1 MQEKTEVNSVQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAE------E 54
Query: 61 IDDETYEEIVR 71
+D T + IVR
Sbjct: 55 LDTRTNQVIVR 65
>gi|389738918|gb|EIM80113.1| U6 snRNA-associated Sm-like protein LSm7, partial [Stereum
hirsutum FP-91666 SS1]
Length = 99
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
LDL + ++ERI VK RE+ G L YDQ LN++L +V+E V
Sbjct: 17 LDLSKY-VNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVQEEV 59
>gi|295664210|ref|XP_002792657.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278771|gb|EEH34337.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 180
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRV 72
LDL + +++ + VK RE+ G L YDQ +N++L DV+EV+ E D++T + V
Sbjct: 94 LDLAKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKEVMRDDE-DNQTTRPLGLV 151
Query: 73 CCNLKILLL 81
+L+L
Sbjct: 152 VARGTLLVL 160
>gi|225677618|gb|EEH15902.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 179
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRV 72
LDL + +++ + VK RE+ G L YDQ +N++L DV+EV+ E D++T + V
Sbjct: 93 LDLAKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKEVMRDDE-DNQTTRPLGLV 150
Query: 73 CCNLKILLL 81
+L+L
Sbjct: 151 VARGTLLVL 159
>gi|432328294|ref|YP_007246438.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135003|gb|AGB04272.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 72
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL ++ +++RI + L+ +R L GKL +D ++NM+L D EE
Sbjct: 4 PLKMLENFMNKRISLLLKDNRVLEGKLVGFDDYMNMVLMDTEE 46
>gi|171676173|ref|XP_001903040.1| hypothetical protein [Podospora anserina S mat+]
gi|170936152|emb|CAP60812.1| unnamed protein product [Podospora anserina S mat+]
Length = 153
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
+D+RI VK RE+ G L YD +N++L +V+E V DDE E
Sbjct: 71 MDKRITVKFNGGREVTGTLKGYDALMNLVLDEVQEAVR----DDEGNE 114
>gi|217075318|gb|ACJ86019.1| unknown [Medicago truncatula]
Length = 108
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ V
Sbjct: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVGAFDRHCNMVLENVREMWAEV 71
>gi|390981167|pdb|4EMK|A Chain A, Crystal Structure Of Splsm567
Length = 94
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
PL+LI + ++V +S+RE G L +D ++N++L DV E T + ++ E ++
Sbjct: 21 PLELIDKCIGSNLWVIXKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEXLLN 80
>gi|331242627|ref|XP_003333959.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312949|gb|EFP89540.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|328861040|gb|EGG10144.1| hypothetical protein MELLADRAFT_94522 [Melampsora larici-populina
98AG31]
Length = 111
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
A EE PL +++ S+ +I + LR++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 19 ALEEHEIATGPLSVLQSSVKNHTQILIALRNNRKLLARVKAFDRHSNMVLVNVKEMWT 76
>gi|109502984|ref|XP_001054331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
gi|392333476|ref|XP_003752904.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
Length = 90
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL+L+ + RI++ ++SD+++ G +D +NM+L DV E T E
Sbjct: 14 PLELVAKCIGSRIHIVMKSDKDIVGTPLGFDDFVNMVLEDVTEFEITPE 62
>gi|358392771|gb|EHK42175.1| hypothetical protein TRIATDRAFT_312688 [Trichoderma atroviride
IMI 206040]
Length = 216
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L+ R+L G++ AYD+H+N++L D EE
Sbjct: 13 INYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEE 47
>gi|47215802|emb|CAG02856.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 74
>gi|303317868|ref|XP_003068936.1| U6 snRNA-associated Sm-like protein LSm7, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108617|gb|EER26791.1| U6 snRNA-associated Sm-like protein LSm7, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038992|gb|EFW20927.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 144
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D+ ++VK RE+ G L YDQ +N++L +V+E + DDE E
Sbjct: 59 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDEVKETMR----DDEGNE 108
>gi|212531689|ref|XP_002146001.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
marneffei ATCC 18224]
gi|210071365|gb|EEA25454.1| small nuclear ribonucleoprotein (LSM7), putative [Talaromyces
marneffei ATCC 18224]
Length = 150
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E ++ DE+ +E R
Sbjct: 65 LDLTKY-MDKEVIVKFNGGREVSGILKGYDQLMNLVLDDVKE-----KMRDESGKEATR 117
>gi|403416516|emb|CCM03216.1| predicted protein [Fibroporia radiculosa]
Length = 110
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
LDL + + +ERI VK RE+ G L +DQ LN++L +VEE
Sbjct: 10 LDLSKYA-NERIRVKFTGGREVTGILKGFDQLLNLVLDEVEE 50
>gi|303391220|ref|XP_003073840.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302988|gb|ADM12480.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
Length = 136
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 2 ASEEESA-VKEPLDLIRLSLDERIYV--KLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
E+ES +K PL L+R ++ + I V LR++R++ GK+ AYD+H N+++ + E T
Sbjct: 10 PGEKESMEMKGPLSLVRRAMVKMIPVLISLRNNRKVTGKVVAYDRHYNLLVREAREFGTA 69
>gi|260949819|ref|XP_002619206.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC
42720]
gi|238846778|gb|EEQ36242.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC
42720]
Length = 164
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRV 72
++ R+ + R G+L A+D+H+N++L D EE TT ++Y+E+ +
Sbjct: 48 INFRLQISTLDGRSFTGQLLAFDKHMNLVLADTEEARTT----KKSYQELAKA 96
>gi|167527011|ref|XP_001747838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773587|gb|EDQ87225.1| predicted protein [Monosiga brevicollis MX1]
Length = 126
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE----VVTTVEIDDETYEEIVRVCCNL 76
D+RI VK RE+ G L +DQ LNM+L D +E + DET + VC +
Sbjct: 44 DKRIRVKFAGGREVTGILKGHDQLLNMVLDDAQEYLRDATDPTRLTDETRTLGLIVCRSS 103
Query: 77 KILLLN 82
I++++
Sbjct: 104 SIVVIS 109
>gi|297743892|emb|CBI36862.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+E E PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 75 NEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP 134
>gi|358382440|gb|EHK20112.1| hypothetical protein TRIVIDRAFT_213486 [Trichoderma virens
Gv29-8]
Length = 215
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L+ R+L G++ AYD+H+N++L D EE
Sbjct: 13 INYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEE 47
>gi|330917406|ref|XP_003297804.1| hypothetical protein PTT_08326 [Pyrenophora teres f. teres 0-1]
gi|311329333|gb|EFQ94110.1| hypothetical protein PTT_08326 [Pyrenophora teres f. teres 0-1]
Length = 131
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
LDL + +D++I VK RE+ G L YDQ +N++L +V+E +T
Sbjct: 46 LDLSKY-MDKQITVKFSGGREVVGTLKGYDQLMNLVLDEVKEALT 89
>gi|432102126|gb|ELK29935.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 109
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 5 EESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
EE PL ++ S+ + ++ + R ++ L G++ A+D H NM+L +VEE+ T V
Sbjct: 11 EEELNTSPLSVLTPSVKNNTQVLINYRKNKNLLGRVKAFDGHYNMVLENVEELGTEVPKS 70
Query: 63 DE 64
D+
Sbjct: 71 DK 72
>gi|268536210|ref|XP_002633240.1| C. briggsae CBR-LSM-7 protein [Caenorhabditis briggsae]
Length = 103
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE----IDDET 65
+DL R LD+ I VK + RE G L +DQ LNM+L D E + + I DET
Sbjct: 14 VDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVIGDET 69
>gi|403332734|gb|EJY65407.1| Small nuclear riboprotein Sm D2 [Oxytricha trifallax]
Length = 103
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+E++ + PL L+ ++ + ++ V R++R+L G++ A+D+H+NM+L +V E+ T
Sbjct: 9 PQEDTFHEGPLSLLTKAVKTNSQVLVNCRNNRKLLGRVKAFDRHMNMVLENVCEMWT 65
>gi|189208804|ref|XP_001940735.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976828|gb|EDU43454.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 131
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
LDL + +D++I VK RE+ G L YDQ +N++L +V+E +T DDE
Sbjct: 46 LDLSKY-MDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALT----DDE 92
>gi|50546793|ref|XP_500866.1| YALI0B14058p [Yarrowia lipolytica]
gi|49646732|emb|CAG83117.1| YALI0B14058p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MASEEESAVKE--PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
M+ + E V + PL+L+ + +I V ++S E G L +D +NM+L DV EV T
Sbjct: 1 MSEQAEPQVSQILPLELVDKCIGSKILVLVKSKVEFTGTLVGFDDFVNMVLEDVTEVNT 59
>gi|396489534|ref|XP_003843128.1| hypothetical protein LEMA_P088880.1 [Leptosphaeria maculans JN3]
gi|312219706|emb|CBX99649.1| hypothetical protein LEMA_P088880.1 [Leptosphaeria maculans JN3]
Length = 202
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
LDL + +D++I VK RE+ G L YDQ +N++L +V+E +T DDE
Sbjct: 116 LDLNKY-MDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALT----DDE 162
>gi|296411623|ref|XP_002835529.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629315|emb|CAZ79686.1| unnamed protein product [Tuber melanosporum]
Length = 136
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRV 72
LDL + +D+ I VK RE+ G L YDQ +N++L DV+E + E +ET E+ V
Sbjct: 51 LDLAKF-MDKAITVKFNGGREVVGILKGYDQLMNLVLDDVKENLRD-EDGNETTRELGLV 108
Query: 73 CCNLKILLL 81
+L L
Sbjct: 109 VARGPMLTL 117
>gi|67624703|ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|126649020|ref|XP_001388072.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|54659846|gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
gi|126117160|gb|EAZ51260.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 106
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 ASEEESAVKEPLDLIR--LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+++++ + PL L+ + + +I V R++R++ G++ A+D+H N++L D E+ T
Sbjct: 11 TTKKDNPSEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWT 68
>gi|357166207|ref|XP_003580635.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like
[Brachypodium distachyon]
Length = 100
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
MA +E+A LDL + +D+ + VKL R++ G L YDQ LN++L
Sbjct: 1 MAGRKETA----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 44
>gi|340519199|gb|EGR49438.1| predicted protein [Trichoderma reesei QM6a]
Length = 217
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L+ R+L G++ AYD+H+N++L D EE
Sbjct: 13 INYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEE 47
>gi|402223834|gb|EJU03898.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 120
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
++ R+ V L REL G++ A+D+H+N++L D EE T
Sbjct: 15 INYRLRVTLNDGRELTGQMLAFDRHMNLVLADCEEFRKT 53
>gi|119186309|ref|XP_001243761.1| hypothetical protein CIMG_03202 [Coccidioides immitis RS]
gi|392870472|gb|EAS32278.2| hypothetical protein CIMG_03202 [Coccidioides immitis RS]
Length = 144
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D+ ++VK RE+ G L YDQ +N++L +V+E + DDE E
Sbjct: 59 LDLTKY-MDKEVHVKFSGGREVTGTLKGYDQLMNLVLDEVKETMR----DDEGNE 108
>gi|320583711|gb|EFW97924.1| Core Sm protein Sm D2 [Ogataea parapolymorpha DL-1]
Length = 110
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 24 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
+ + LR++ +L K+ A+D+H NMIL +V+E+ T DD
Sbjct: 43 VLISLRNNHKLLAKVKAFDRHCNMILENVKEIWTETNPDDRN 84
>gi|300711196|ref|YP_003737010.1| snRNP-like protein [Halalkalicoccus jeotgali B3]
gi|448296703|ref|ZP_21486756.1| snRNP-like protein [Halalkalicoccus jeotgali B3]
gi|299124879|gb|ADJ15218.1| snRNP-like protein [Halalkalicoccus jeotgali B3]
gi|445580835|gb|ELY35205.1| snRNP-like protein [Halalkalicoccus jeotgali B3]
Length = 61
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51
PLD++ ++ + + V+L+ E G L YDQH+N+++ D
Sbjct: 5 PLDVLEAAIGDIVTVQLKDGEEFVGTLTGYDQHMNVVVED 44
>gi|109510075|ref|XP_001054247.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
gi|109512989|ref|XP_214847.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
Length = 118
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSIKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWT 75
>gi|299740998|ref|XP_001834148.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea
okayama7#130]
gi|298404507|gb|EAU87644.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea
okayama7#130]
Length = 107
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
LDL + ++E+I VK RE+ G L YDQ LN++L +VEE V+
Sbjct: 24 LDLSKY-VNEKIRVKFTGGREVIGVLKGYDQLLNLVLDEVEEEVSA 68
>gi|304323323|gb|ADM24798.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323325|gb|ADM24799.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323327|gb|ADM24800.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323329|gb|ADM24801.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323335|gb|ADM24804.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323337|gb|ADM24805.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323341|gb|ADM24807.1| putative small nuclear ribonucleoprotein [Sporidiobolus
johnsonii]
Length = 77
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+D++I VK RE+ G L YDQ LN+++ D+EE +
Sbjct: 2 VDKKIRVKFTGGREVVGTLKGYDQLLNLVMDDLEETL 38
>gi|304323319|gb|ADM24796.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323321|gb|ADM24797.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323331|gb|ADM24802.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323333|gb|ADM24803.1| putative small nuclear ribonucleoprotein [Sporidiobolus
salmonicolor]
gi|304323339|gb|ADM24806.1| putative small nuclear ribonucleoprotein [Sporidiobolus
johnsonii]
Length = 77
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
+D++I VK RE+ G L YDQ LN+++ D+EE +
Sbjct: 2 VDKKIRVKFTGGREVVGTLKGYDQLLNLVMDDLEETL 38
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
E+ + PLDL+ + + + V+L++ + GKL A+D H+N+ L + EE
Sbjct: 3 ENVLSRPLDLLNSAKGKMVLVELKNGHAITGKLVAFDVHINVTLENAEE 51
>gi|302849879|ref|XP_002956468.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
gi|300258166|gb|EFJ42405.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
Length = 297
Score = 37.7 bits (86), Expect = 1.00, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
R+ V L R++ G+ A+D+H+N++LGD EE
Sbjct: 16 RMRVTLVDSRQIVGRFMAFDRHMNLVLGDSEE 47
>gi|397779277|ref|YP_006543750.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
gi|396937779|emb|CCJ35034.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
Length = 75
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 12 PLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PLD++ L+ + + + L+ RE+RG L YD H+N++L EE
Sbjct: 5 PLDILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEE 48
>gi|242077336|ref|XP_002448604.1| hypothetical protein SORBIDRAFT_06g029950 [Sorghum bicolor]
gi|241939787|gb|EES12932.1| hypothetical protein SORBIDRAFT_06g029950 [Sorghum bicolor]
Length = 98
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
MA +E+A LDL + +D+ + VKL R++ G L YDQ LN++L
Sbjct: 1 MAGRKETA----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 44
>gi|340368632|ref|XP_003382855.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm7-like
[Amphimedon queenslandica]
Length = 108
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMIL-GDVE---EVVTTVEIDDETYEEIVRVCCN 75
LD+RI VK + RE G L YDQ LN++L G +E + ++ DET + VC
Sbjct: 24 LDKRIRVKFQGGRETSGILKGYDQLLNLVLDGAIEYLQDPKDQFKLTDETRSLGLVVCRG 83
Query: 76 LKILLL 81
++L+
Sbjct: 84 TAVVLI 89
>gi|164657261|ref|XP_001729757.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
gi|159103650|gb|EDP42543.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
Length = 87
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ + I+V ++ RE GKL +D ++NM+L D E
Sbjct: 9 PLELVDRCIGSSIWVVMKGQREFVGKLLGFDDYVNMVLEDAVE 51
>gi|124484977|ref|YP_001029593.1| hypothetical protein Mlab_0149 [Methanocorpusculum labreanum Z]
gi|124362518|gb|ABN06326.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 75
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 10 KEPLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
K PL+++ L+ + + + L+ RE+RG L YD H+N++L EE
Sbjct: 3 KRPLEILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEE 48
>gi|395327701|gb|EJF60098.1| LSM-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 96
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
LDL + ++ERI VK RE+ G L YDQ LN++L +V+E
Sbjct: 10 LDLAKY-VNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVQE 50
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 29/37 (78%)
Query: 21 DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+ ++ + R++R+L G++ A+D+HLN++L +V+EV T
Sbjct: 24 NSQVLINCRNNRKLLGRVKAFDRHLNLLLENVKEVWT 60
>gi|451845213|gb|EMD58526.1| hypothetical protein COCSADRAFT_194481 [Cochliobolus sativus
ND90Pr]
Length = 136
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
LDL + +D++I VK RE+ G L YDQ +N++L +V+E +T
Sbjct: 51 LDLSKY-MDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALT 94
>gi|409076181|gb|EKM76554.1| hypothetical protein AGABI1DRAFT_131111 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 130
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
LDL + ++E I VK RE+ G L YDQ LN++L DV+E +
Sbjct: 44 LDLAKY-VNEPIRVKFMGGREVVGTLKGYDQLLNLVLDDVQEQI 86
>gi|254564981|ref|XP_002489601.1| hypothetical protein [Komagataella pastoris GS115]
gi|238029397|emb|CAY67320.1| Hypothetical protein PAS_chr1-3_0256 [Komagataella pastoris
GS115]
gi|328350024|emb|CCA36424.1| Probable U6 snRNA-associated Sm-like protein LSm5 [Komagataella
pastoris CBS 7435]
Length = 79
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL+L+ ++ ++ + L +DRE G L +D+ +N+IL DV E
Sbjct: 12 PLELVDKAIGSQVRILLINDREFEGTLVGFDEFVNVILSDVTE 54
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
A +P+D+++ +L + + ++ +RE G L YD ++N++L + E++
Sbjct: 6 ANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIIN 55
>gi|340368003|ref|XP_003382542.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Amphimedon queenslandica]
Length = 119
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL L+ S+ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 27 PLSLLTQSVKYNTQVLINCRNNRKLLARVKAFDRHFNMVLENVKEMWT 74
>gi|226530979|ref|NP_001152342.1| LSM7-like [Zea mays]
gi|195651475|gb|ACG45205.1| LSM7-like [Zea mays]
gi|195655329|gb|ACG47132.1| LSM7-like [Zea mays]
gi|414585245|tpg|DAA35816.1| TPA: LSM7-like protein [Zea mays]
Length = 98
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
MA +E+A LDL + +D+ + VKL R++ G L YDQ LN++L
Sbjct: 1 MAGRKETA----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 44
>gi|308491262|ref|XP_003107822.1| CRE-LSM-7 protein [Caenorhabditis remanei]
gi|308249769|gb|EFO93721.1| CRE-LSM-7 protein [Caenorhabditis remanei]
Length = 103
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
+DL R LD+ I VK + RE G L +DQ LNM+L D E
Sbjct: 14 VDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCRE 54
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L R + G+ A+D+H+N++LGD EE
Sbjct: 13 INYRMRVTLIDSRHIVGRFMAFDRHMNLVLGDAEE 47
>gi|340897383|gb|EGS16973.1| putative RNA splicing factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 211
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L R++ G++ A+D+H+N++L D EE
Sbjct: 15 INWRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEE 49
>gi|66809065|ref|XP_638255.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853875|sp|Q54NC5.1|SMD2_DICDI RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|60466721|gb|EAL64772.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 112
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S++ ++ + +R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 19 PLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVP 69
>gi|224010870|ref|XP_002294392.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969887|gb|EED88226.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 131
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVR 71
L+L +L +D + VK RELRG L YD+ +N++L D EE + E D ET R
Sbjct: 36 LELAKL-VDSSVRVKCLGGRELRGALRGYDELVNLVLDDCEEFMRDPE-DPETITNQTR 92
>gi|350632124|gb|EHA20492.1| hypothetical protein ASPNIDRAFT_44190 [Aspergillus niger ATCC 1015]
Length = 310
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L R++ G++ A+D+H+N++L D EE
Sbjct: 92 INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEE 126
>gi|348572834|ref|XP_003472197.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
Length = 117
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
EEE PL ++ S+ + ++ + R++++L G + A+D+H NM+L +V+E+ T V
Sbjct: 20 EEEKFNTGPLSVLTQSIKNNTQVLIDCRNNKKLLGLVKAFDRHCNMVLENVKEMWTEV 77
>gi|116181000|ref|XP_001220349.1| hypothetical protein CHGG_01128 [Chaetomium globosum CBS 148.51]
gi|88185425|gb|EAQ92893.1| hypothetical protein CHGG_01128 [Chaetomium globosum CBS 148.51]
Length = 381
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L R++ G++ A+D+H+N++L D EE
Sbjct: 14 INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEE 48
>gi|67531296|ref|XP_662080.1| hypothetical protein AN4476.2 [Aspergillus nidulans FGSC A4]
gi|40741629|gb|EAA60819.1| hypothetical protein AN4476.2 [Aspergillus nidulans FGSC A4]
Length = 395
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L R++ G++ A+D+H+N++L D EE
Sbjct: 13 INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEE 47
>gi|340519781|gb|EGR50019.1| predicted protein [Trichoderma reesei QM6a]
Length = 100
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D+ I VK RE+RG L YD +N++L V+E + DDE E
Sbjct: 16 LDLAKY-MDKEIIVKFNGGREVRGTLKGYDALMNLVLDQVQETLR----DDEGNE 65
>gi|308801164|ref|XP_003075361.1| small nuclear ribonucleoprotein D2-like protein (ISS)
[Ostreococcus tauri]
gi|116061917|emb|CAL52635.1| small nuclear ribonucleoprotein D2-like protein (ISS), partial
[Ostreococcus tauri]
Length = 103
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++R+L ++ A+D+H NM+L +V+E+ T V
Sbjct: 17 PLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVP 67
>gi|159111944|ref|XP_001706202.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
gi|157434296|gb|EDO78528.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
Length = 124
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 18 LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
L+L + + V+LRS R + G L AYD+HLN++ + E
Sbjct: 58 LALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATET 95
>gi|426193423|gb|EKV43356.1| hypothetical protein AGABI2DRAFT_121482 [Agaricus bisporus var.
bisporus H97]
Length = 127
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
LDL + ++E I VK RE+ G L YDQ LN++L DV+E +
Sbjct: 44 LDLAKY-VNEPIRVKFMGGREVVGTLKGYDQLLNLVLDDVQEQI 86
>gi|170030740|ref|XP_001843246.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
gi|167867922|gb|EDS31305.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
Length = 119
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 77
>gi|170097019|ref|XP_001879729.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645132|gb|EDR09380.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 99
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
LDL + ++E+I VK RE+ G L YDQ LN++L +VEE
Sbjct: 18 LDLSKY-VNEKIRVKFTGGREVTGILKGYDQLLNLVLDEVEE 58
>gi|448474549|ref|ZP_21602408.1| Like-Sm ribonucleoprotein core [Halorubrum aidingense JCM 13560]
gi|445817856|gb|EMA67725.1| Like-Sm ribonucleoprotein core [Halorubrum aidingense JCM 13560]
Length = 80
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
PLD++ SL+E + V L+ G L YDQH+N+++
Sbjct: 5 PLDVLEASLEEPVTVHLKDGTTYYGILAGYDQHMNVVI 42
>gi|126178181|ref|YP_001046146.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125860975|gb|ABN56164.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 75
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 12 PLDLIRLSLD-ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PLD++ L+ + + + L+ RE+RG L YD H+N++L EE
Sbjct: 5 PLDILDQVLNRQPVIISLKGGREIRGILQGYDVHMNLVLDKAEE 48
>gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM
1728]
gi|11387090|sp|P57670.1|RUXX_THEAC RecName: Full=Putative snRNP Sm-like protein
gi|10640586|emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
Length = 83
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 30/47 (63%)
Query: 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
+P+D+++ +L + + ++ +RE G L YD ++N++L + E++
Sbjct: 9 KPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIIN 55
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 10 KEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
K P L+ ++ + + + +R++R+L G + A+D+H+N+IL +V E+ TT + Y
Sbjct: 6 KSPFFLLVQAVISNRPVIIFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCVEKNIFYH 65
Query: 68 E 68
E
Sbjct: 66 E 66
>gi|452002106|gb|EMD94564.1| hypothetical protein COCHEDRAFT_1221931 [Cochliobolus
heterostrophus C5]
Length = 135
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
LDL + +D++I VK RE+ G L YDQ +N++L +V+E +T
Sbjct: 50 LDLSKY-MDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALT 93
>gi|157124529|ref|XP_001654090.1| small nuclear ribonucleoprotein sm d2 [Aedes aegypti]
gi|108873936|gb|EAT38161.1| AAEL009914-PA [Aedes aegypti]
Length = 119
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 77
>gi|268557296|ref|XP_002636637.1| C. briggsae CBR-SNR-4 protein [Caenorhabditis briggsae]
Length = 118
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 78
>gi|417408038|gb|JAA50593.1| Putative small nuclear ribonucleoprotein snrnp sm core protein,
partial [Desmodus rotundus]
Length = 140
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 50 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 97
>gi|402871503|ref|XP_003899701.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Papio
anubis]
Length = 91
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
L+ + + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 15 LEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITPE 62
>gi|260942737|ref|XP_002615667.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC
42720]
gi|238850957|gb|EEQ40421.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC
42720]
Length = 112
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 EEESAVKEPLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
EE P+ +I+ S++ + V R++ ++ GK+ A+D+H N+IL DV+E+ T
Sbjct: 21 EEFEFTHGPMSVIQSSMNNNTPVVVHCRNNHKVIGKVKAFDRHCNLILEDVKELWT 76
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
++ RI + L+ R G A+D+H+N+ILGD EE T
Sbjct: 5 INYRIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRT 43
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
A +P+D+++ +L + + ++ +RE G L YD ++N++L + E++
Sbjct: 10 ANTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIIN 59
>gi|410076164|ref|XP_003955664.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
gi|372462247|emb|CCF56529.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
Length = 87
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIV 70
PL++I ++++ +++ L+S+RE G L +D +N+I+ D +E + ++D E+V
Sbjct: 8 PLEVIDKTINQPVWIILQSNREFTGTLVGFDDFVNVIIDDAKEYI----VNDNGENELV 62
>gi|255080076|ref|XP_002503618.1| predicted protein [Micromonas sp. RCC299]
gi|226518885|gb|ACO64876.1| predicted protein [Micromonas sp. RCC299]
Length = 88
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET 65
P +L+ + RI+V ++ ++E+ G L +D ++NM+L DV E T E ET
Sbjct: 10 PSELVDKCVGSRIWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEYEMTPEGRRET 63
>gi|225680898|gb|EEH19182.1| hypothetical protein PABG_01501 [Paracoccidioides brasiliensis
Pb03]
Length = 221
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 17 RLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ ++ R+ V L R++ G++ A+D+H+N++L D EE
Sbjct: 4 QIQINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEE 41
>gi|403411591|emb|CCL98291.1| predicted protein [Fibroporia radiculosa]
Length = 600
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 18 LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58
S RI+V ++S+RE G L +D +NM+L DV E T
Sbjct: 528 FSFGSRIWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEIT 568
>gi|403216561|emb|CCK71058.1| hypothetical protein KNAG_0F03940 [Kazachstania naganishii CBS
8797]
Length = 87
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 11 EPLDLIRLSLDERIYVKLR-SDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEI 69
P +R ++ER+ VKL+ +D RG L + D + N+ L D EE++ + + T EI
Sbjct: 8 NPKPFLRSLVNERVVVKLKFNDTTYRGTLLSTDNYFNLQLADAEEIIGST--NRGTVGEI 65
Query: 70 VRVCCNL 76
C N+
Sbjct: 66 FIRCNNV 72
>gi|134948671|ref|NP_001077096.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
gi|117606770|gb|ABK42005.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
Length = 119
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 78
>gi|358385010|gb|EHK22607.1| hypothetical protein TRIVIDRAFT_60544 [Trichoderma virens Gv29-8]
Length = 132
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
A++ E KE LDL + +D+ I VK RE+RG L YD +N++L +V+E +
Sbjct: 34 AAQGERPKKENILDLAKY-MDKEITVKFNGGREVRGTLKGYDALMNLVLDEVQETL 88
>gi|291224549|ref|XP_002732266.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-4)-like [Saccoglossus kowalevskii]
Length = 123
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 83
>gi|302499670|ref|XP_003011830.1| U6 snRNP-associated protein Lsm7 [Arthroderma benhamiae CBS 112371]
gi|291175384|gb|EFE31190.1| U6 snRNP-associated protein Lsm7 [Arthroderma benhamiae CBS 112371]
Length = 223
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV--TTVEID 62
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + TV +D
Sbjct: 114 LDLTKY-MDKEVNVKFNGGREVTGVLKGYDQLMNLVLDDVKETMRGKTVHLD 164
>gi|380491285|emb|CCF35428.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 144
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRV 72
LDL + +D++I VK RE+ G L YD +N++L +V+EV+ E +ET + V
Sbjct: 58 LDLSKY-MDKQITVKFNGGREVTGTLKGYDALMNLVLDEVQEVMRDEE-GNETTRSLGLV 115
Query: 73 CCNLKILLL 81
+L+L
Sbjct: 116 VARGTLLVL 124
>gi|121701131|ref|XP_001268830.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
clavatus NRRL 1]
gi|119396973|gb|EAW07404.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
clavatus NRRL 1]
Length = 140
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + DDE E
Sbjct: 55 LDLSKY-MDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMR----DDEGNE 104
>gi|357627860|gb|EHJ77403.1| small nuclear ribonucleoprotein sm d2 [Danaus plexippus]
Length = 109
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 68
>gi|321460184|gb|EFX71229.1| hypothetical protein DAPPUDRAFT_309154 [Daphnia pulex]
Length = 122
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 29 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 79
>gi|424513391|emb|CCO66013.1| U6 snRNA-associated Sm-like protein LSm6 [Bathycoccus prasinos]
Length = 82
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
AS SA K P D ++ +R+ VKL S + RG L D ++N+ + EE V
Sbjct: 3 ASTTTSASKTPADFLKSIRGKRVVVKLNSGVDYRGILACLDGYMNIAMEHTEEYV 57
>gi|315043418|ref|XP_003171085.1| RH73529p [Arthroderma gypseum CBS 118893]
gi|311344874|gb|EFR04077.1| RH73529p [Arthroderma gypseum CBS 118893]
Length = 151
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E +
Sbjct: 65 LDLTKY-MDKEVNVKFNGGREVTGVLKGYDQLMNLVLDDVKETM 107
>gi|348673388|gb|EGZ13207.1| hypothetical protein PHYSODRAFT_334991 [Phytophthora sojae]
Length = 106
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+ + K+P LDL + +D+ + VK RE+ G L YDQ +N++L D E +
Sbjct: 5 GASGGGSRKDPILDLAKY-IDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDCVEFLRDPN 63
Query: 61 ----IDDETYEEIVRVCCNLKILLLN 82
I D+T + + VC ++L++
Sbjct: 64 DEYRITDDTRKVGLVVCRGTSVMLVS 89
>gi|344249248|gb|EGW05352.1| Small nuclear ribonucleoprotein Sm D2 [Cricetulus griseus]
Length = 108
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 68
>gi|255070809|ref|XP_002507486.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
gi|226522761|gb|ACO68744.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
Length = 101
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
PL ++ S+ ++ + R++R+L G++ A+D+H NM+L +V+E+ T +
Sbjct: 15 PLSVLSHSVKTSAQVLISCRNNRKLLGRVKAFDRHCNMVLENVKELWTEI 64
>gi|225704668|gb|ACO08180.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ + L+ R G A+D+H+N+ILGD EE
Sbjct: 12 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEE 46
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ + L+ R G A+D+H+N+ILGD EE
Sbjct: 141 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEE 175
>gi|290972303|ref|XP_002668893.1| predicted protein [Naegleria gruberi]
gi|290991668|ref|XP_002678457.1| predicted protein [Naegleria gruberi]
gi|284082430|gb|EFC36149.1| predicted protein [Naegleria gruberi]
gi|284092069|gb|EFC45713.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL L+ S+ E+ I + R++R+L ++ A+D+H NM+L +V+E+ T
Sbjct: 31 PLSLLLESVREQTQILISCRNNRKLLARVKAFDRHCNMVLENVQEMWT 78
>gi|225704396|gb|ACO08044.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|225703700|gb|ACO07696.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|209731722|gb|ACI66730.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209733910|gb|ACI67824.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209737798|gb|ACI69768.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209738154|gb|ACI69946.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|225704008|gb|ACO07850.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|225705510|gb|ACO08601.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|303663493|gb|ADM16106.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 118
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|156383890|ref|XP_001633065.1| predicted protein [Nematostella vectensis]
gi|156220130|gb|EDO41002.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT--- 57
MAS E K DL + LD+ + VK + RE G L +D LN++L + E +
Sbjct: 1 MASGERKEKKSIFDLSKF-LDKGVRVKFQGGREASGVLKGFDALLNLVLDNTIEYLRDPD 59
Query: 58 -TVEIDDETYEEIVRVCCNLKILLL 81
+++ DET + + VC ++L+
Sbjct: 60 DPLKLSDETRQLGLVVCRGTAVVLV 84
>gi|310794009|gb|EFQ29470.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 143
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRV 72
LDL + +D++I VK RE+ G L YD +N++L +V+EV+ E +ET + V
Sbjct: 57 LDLSKY-MDKQITVKFNGGREVTGTLKGYDALMNLVLDEVQEVMRDEE-GNETTRSLGLV 114
Query: 73 CCNLKILLL 81
+L+L
Sbjct: 115 VARGTLLVL 123
>gi|226530574|ref|NP_001148733.1| LSM7-like [Zea mays]
gi|195621704|gb|ACG32682.1| LSM7-like [Zea mays]
gi|413919649|gb|AFW59581.1| LSM7-like protein [Zea mays]
Length = 156
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 49
MA +E+A LDL + +D+ + VKL R++ G L YDQ LN++L
Sbjct: 59 MAGRKETA----LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 102
>gi|453086972|gb|EMF15013.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 121
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL L++ ++ + ++ + R++R+L G++ A+D+H NM+L +V+E+ +
Sbjct: 38 PLSLLQTAVRQHTQVLISCRNNRKLLGRVKAFDRHCNMVLENVKEMWS 85
>gi|425770497|gb|EKV08967.1| Small nuclear ribonucleoprotein (LSM7), putative [Penicillium
digitatum Pd1]
gi|425771863|gb|EKV10295.1| Small nuclear ribonucleoprotein (LSM7), putative [Penicillium
digitatum PHI26]
Length = 125
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E +
Sbjct: 40 LDLSKY-MDKEVQVKFNGGREVIGTLKGYDQLMNLVLDDVKETM 82
>gi|345567932|gb|EGX50834.1| hypothetical protein AOL_s00054g920 [Arthrobotrys oligospora ATCC
24927]
Length = 215
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L R+L G L A+D+H+N++L D EE
Sbjct: 12 INYRMRVTLNDSRQLTGTLLAFDKHMNVVLADTEE 46
>gi|225704522|gb|ACO08107.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|444315021|ref|XP_004178168.1| hypothetical protein TBLA_0A08590 [Tetrapisispora blattae CBS
6284]
gi|387511207|emb|CCH58649.1| hypothetical protein TBLA_0A08590 [Tetrapisispora blattae CBS
6284]
Length = 97
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
PL++I ++++++++ L+S RE GKL D +N+I+ DV E +
Sbjct: 23 PLEIIDKAINQQVWILLQSQREFIGKLIGVDDFVNVIIEDVTEYI 67
>gi|238492871|ref|XP_002377672.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
gi|317156803|ref|XP_003190769.1| U6 snRNA-associated Sm-like protein LSm7 [Aspergillus oryzae
RIB40]
gi|220696166|gb|EED52508.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
Length = 133
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 2 ASEEESAVKEP-LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
A ++E KE LDL + +D+ + VK RE+ G L +DQ +N++L DV+E +
Sbjct: 36 AQQQEKPKKENILDLSKY-MDKEVRVKFNGGREVVGTLKGFDQLMNLVLDDVKESMR--- 91
Query: 61 IDDETYE 67
DDE E
Sbjct: 92 -DDEGNE 97
>gi|332376785|gb|AEE63532.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 74
>gi|354486715|ref|XP_003505524.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cricetulus
griseus]
Length = 139
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 49 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 99
>gi|209738048|gb|ACI69893.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221220052|gb|ACM08687.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221221714|gb|ACM09518.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|303664033|gb|ADM16126.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|353242927|emb|CCA74526.1| related to small nuclear ribonucleoprotein associated protein b
[Piriformospora indica DSM 11827]
Length = 163
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 23 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
RI V L +R+L G++ A+D+H+N++L D EE
Sbjct: 8 RIRVTLNDNRQLVGQMLAFDRHMNLVLADCEE 39
>gi|226292603|gb|EEH48023.1| hypothetical protein PADG_04107 [Paracoccidioides brasiliensis
Pb18]
Length = 227
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L R++ G++ A+D+H+N++L D EE
Sbjct: 13 INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEE 47
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
P+ ++ +L++++ + L+ +R L G L YD+++NM L D EE
Sbjct: 5 PMKMLEENLNKKVTLLLKDNRSLVGTLVGYDEYMNMTLDDAEE 47
>gi|427786227|gb|JAA58565.1| Putative small nuclear ribonucleoprotein d2 polypeptide
[Rhipicephalus pulchellus]
Length = 118
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIP 78
>gi|45201226|ref|NP_986796.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|44986080|gb|AAS54620.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|374110045|gb|AEY98950.1| FAGR130Wp [Ashbya gossypii FDAG1]
Length = 80
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
PL++I ++++ I+V L S+RE G L +D +N+++ DV E
Sbjct: 5 PLEIIDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVE 47
>gi|225704758|gb|ACO08225.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|328792204|ref|XP_003251694.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis mellifera]
Length = 122
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 30 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 77
>gi|325190755|emb|CCA25247.1| small nuclear ribonucleoproteinassociated protein pu [Albugo
laibachii Nc14]
Length = 218
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
++ R+ V L+ R L G A+D+H+N++LGD EE T
Sbjct: 13 INYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRT 50
>gi|308162403|gb|EFO64802.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
P15]
Length = 83
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 18 LSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
L+L + + V+LRS R + G L AYD+HLN++ + E
Sbjct: 17 LALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATET 54
>gi|225705318|gb|ACO08505.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 111
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 18 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 65
>gi|241690286|ref|XP_002411748.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes
scapularis]
gi|215504583|gb|EEC14077.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes
scapularis]
gi|442752791|gb|JAA68555.1| Putative small nuclear ribonucleoprotein d2 polypeptide [Ixodes
ricinus]
Length = 118
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIP 78
>gi|221221306|gb|ACM09314.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|449296389|gb|EMC92409.1| hypothetical protein BAUCODRAFT_287708 [Baudoinia compniacensis
UAMH 10762]
Length = 133
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 3 SEEESAVKEPLDLIRLS--LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVV 56
S+ +SA ++ +++ L+ +D+ I VK RE+ G L YDQ +N++L +V+E+
Sbjct: 33 SQAQSADRKKENILDLTKYMDKDITVKFNGGREVTGLLKGYDQLMNLVLDNVKEIT 88
>gi|281343311|gb|EFB18895.1| hypothetical protein PANDA_010826 [Ailuropoda melanoleuca]
Length = 79
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
++L+ + RI++ ++SD+E+ G L +D +NM+L DV E T E
Sbjct: 3 IELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE 50
>gi|358053885|dbj|GAB00018.1| hypothetical protein E5Q_06720 [Mixia osmundae IAM 14324]
Length = 111
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 2 ASEEESAVKEPLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
A EE + PL++++ S+ +I V LR+ +L ++ A+D+H NM+L +V+E+ T +
Sbjct: 19 ALEEHEISQGPLNVLQQSVKNHTQILVALRNGHKLLARVKAFDRHSNMVLENVKEMWTEI 78
>gi|308322523|gb|ADO28399.1| small nuclear ribonucleoprotein sm d2 [Ictalurus furcatus]
Length = 123
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 33 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 80
>gi|289742143|gb|ADD19819.1| small ribonucleoprotein particle protein B [Glossina morsitans
morsitans]
Length = 200
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
L+ R+ + L+ R G A+D+H+N+ILGD EE
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEE 47
>gi|119115655|ref|XP_318388.2| AGAP003936-PA [Anopheles gambiae str. PEST]
gi|116119487|gb|EAA13684.2| AGAP003936-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIP 77
>gi|294887859|ref|XP_002772254.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
gi|239876324|gb|EER04070.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 16 IRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+R +++RI VKL +DR + G + YDQ +N++L + E+V+ E
Sbjct: 17 LRRFMEKRIDVKLNADRHVVGVVRGYDQFMNLVLDNAVELVSRTE 61
>gi|119495066|ref|XP_001264327.1| small nuclear ribonucleoprotein (LSM7), putative [Neosartorya
fischeri NRRL 181]
gi|119412489|gb|EAW22430.1| small nuclear ribonucleoprotein (LSM7), putative [Neosartorya
fischeri NRRL 181]
Length = 138
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE 67
LDL + +D+ + VK RE+ G L YDQ +N++L DV+E + DDE E
Sbjct: 53 LDLSKY-MDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMR----DDEGNE 102
>gi|309264759|ref|XP_003086355.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R+ ++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 28 PLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVP 78
>gi|294950648|ref|XP_002786721.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
gi|239901040|gb|EER18517.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 16 IRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
+R +++RI VKL +DR + G + YDQ +N++L + E+V+ E
Sbjct: 17 LRRFMEKRIDVKLNADRHVVGVVRGYDQFMNLVLDNAVELVSRTE 61
>gi|346468901|gb|AEO34295.1| hypothetical protein [Amblyomma maculatum]
gi|346468903|gb|AEO34296.1| hypothetical protein [Amblyomma maculatum]
gi|346468905|gb|AEO34297.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIP 78
>gi|320587516|gb|EFW99996.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 203
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++ R+ V L R++ G++ A+D+H+N++L D EE
Sbjct: 10 INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEE 44
>gi|326472938|gb|EGD96947.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326477364|gb|EGE01374.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 83
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
++LI + +I++ ++ D+E G L +D ++NM+L DV E
Sbjct: 7 VELIDKCVGSKIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTE 48
>gi|225709580|gb|ACO10636.1| Small nuclear ribonucleoprotein Sm D2 [Caligus rogercresseyi]
Length = 121
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
PL ++ S+ + ++ V R++++L G++ A+D+H NM+L +V+E+ T
Sbjct: 28 PLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75
>gi|158294309|ref|XP_315523.4| AGAP005523-PA [Anopheles gambiae str. PEST]
gi|157015505|gb|EAA11463.4| AGAP005523-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 54
L+ R+ + L+ R G A+D+H+N+ILGD EE
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEE 47
>gi|126137433|ref|XP_001385240.1| hypothetical protein PICST_60825 [Scheffersomyces stipitis CBS
6054]
gi|126092462|gb|ABN67211.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 112
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 12 PLDLIRLSLDER--IYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDE 64
P+ LI+ +++ I + R++ +L GK+ A+D+H N+IL +V+E+ T +++
Sbjct: 29 PMSLIQNAVNNNTPIVISCRNNHKLIGKVRAFDRHCNLILENVKELWTETSKNNK 83
>gi|302766595|ref|XP_002966718.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
gi|300166138|gb|EFJ32745.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
Length = 1249
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 12 PLDLIRLSLDE--RIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTV 59
PL ++ S+ + ++ + R++R+L G++ A+D+H NM+L +V E+ T V
Sbjct: 1042 PLSVLTSSVKQNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVREMWTEV 1091
>gi|225714876|gb|ACO13284.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57
EEE PL ++ S+ + ++ + R++++L G++ A+ +H NM+L +V+E+ T
Sbjct: 20 EEEGFNTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFGRHCNMVLENVKEMWT 75
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.139 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,175,621,436
Number of Sequences: 23463169
Number of extensions: 40293919
Number of successful extensions: 130896
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 129620
Number of HSP's gapped (non-prelim): 1488
length of query: 85
length of database: 8,064,228,071
effective HSP length: 55
effective length of query: 30
effective length of database: 6,773,753,776
effective search space: 203212613280
effective search space used: 203212613280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)