Query 034752
Match_columns 85
No_of_seqs 117 out of 1033
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emg_A Probable U6 snRNA-assoc 99.9 3.9E-23 1.3E-27 132.1 9.2 79 6-84 4-83 (93)
2 1mgq_A SM-like protein; LSM, R 99.9 1.1E-22 3.6E-27 127.2 9.7 71 1-84 6-76 (83)
3 1i8f_A Putative snRNP SM-like 99.9 1.7E-22 5.9E-27 125.6 9.0 71 1-84 1-71 (81)
4 4emk_A U6 snRNA-associated SM- 99.9 4.3E-22 1.5E-26 127.9 9.8 72 2-84 11-82 (94)
5 3bw1_A SMX4 protein, U6 snRNA- 99.9 1.2E-21 4.2E-26 125.6 10.2 73 7-84 6-78 (96)
6 1b34_B Protein (small nuclear 99.9 4.6E-22 1.6E-26 131.6 8.3 81 4-84 20-104 (118)
7 1ljo_A Archaeal SM-like protei 99.9 2.4E-21 8.1E-26 119.2 9.8 65 8-84 2-67 (77)
8 1h64_1 SnRNP SM-like protein; 99.9 4.3E-21 1.5E-25 117.4 9.6 63 10-84 3-65 (75)
9 1i4k_A Putative snRNP SM-like 99.8 5.9E-21 2E-25 117.2 9.5 63 10-84 3-65 (77)
10 4emk_B U6 snRNA-associated SM- 99.8 4.6E-21 1.6E-25 117.7 8.7 63 10-84 3-65 (75)
11 2fwk_A U6 snRNA-associated SM- 99.8 1.1E-21 3.9E-26 130.3 5.8 77 8-84 25-104 (121)
12 1th7_A SnRNP-2, small nuclear 99.8 1.1E-20 3.9E-25 117.2 9.1 63 10-84 8-70 (81)
13 4emk_C U6 snRNA-associated SM- 99.8 6.6E-21 2.3E-25 125.8 8.1 76 4-84 16-91 (113)
14 1d3b_B Protein (small nuclear 99.8 6.9E-21 2.4E-25 120.2 7.8 72 11-84 4-75 (91)
15 3s6n_E Small nuclear ribonucle 99.8 3.5E-21 1.2E-25 123.2 6.4 68 6-84 11-82 (92)
16 3s6n_F Small nuclear ribonucle 99.8 1.8E-20 6E-25 118.2 9.3 64 9-84 4-67 (86)
17 1n9r_A SMF, small nuclear ribo 99.8 9.9E-21 3.4E-25 121.1 7.3 68 5-84 15-83 (93)
18 1d3b_A Protein (small nuclear 99.8 3.5E-20 1.2E-24 114.1 9.1 64 9-84 3-66 (75)
19 3s6n_G Small nuclear ribonucle 99.8 3.6E-20 1.2E-24 114.0 6.6 62 11-84 4-65 (76)
20 4emh_A Probable U6 snRNA-assoc 99.8 1.5E-19 5.1E-24 118.1 7.7 65 9-84 14-78 (105)
21 3pgw_B SM B; protein-RNA compl 99.8 3.2E-19 1.1E-23 130.0 9.1 73 10-84 3-75 (231)
22 1b34_A Protein (small nuclear 99.8 9E-19 3.1E-23 116.1 8.4 62 11-84 2-63 (119)
23 2y9a_D Small nuclear ribonucle 99.7 8.4E-18 2.9E-22 112.8 8.4 64 9-84 3-66 (126)
24 1m5q_A SMAP3, small nuclear ri 99.7 1.4E-16 4.9E-21 107.3 6.7 56 13-84 2-57 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.6 1.3E-07 4.3E-12 59.8 6.8 42 10-52 7-49 (86)
26 3sb2_A Protein HFQ; SM-like, R 97.4 0.00019 6.4E-09 44.6 4.6 36 13-48 10-47 (79)
27 1u1s_A HFQ protein; SM-like ba 97.4 0.00028 9.7E-09 44.0 5.3 36 14-50 10-47 (82)
28 2ylb_A Protein HFQ; RNA-bindin 97.4 0.00031 1.1E-08 42.9 5.3 38 13-51 11-50 (74)
29 2y90_A Protein HFQ; RNA-bindin 97.3 0.00037 1.3E-08 45.2 4.6 37 13-49 11-49 (104)
30 3ahu_A Protein HFQ; SM-like mo 97.1 0.00052 1.8E-08 42.4 3.9 35 14-48 14-50 (78)
31 1kq1_A HFQ, HOST factor for Q 97.1 0.0013 4.3E-08 40.5 5.6 37 13-49 9-47 (77)
32 2qtx_A Uncharacterized protein 96.9 0.0022 7.4E-08 39.0 5.0 29 20-48 24-52 (71)
33 1ycy_A Conserved hypothetical 95.5 0.032 1.1E-06 33.5 5.1 43 14-57 9-51 (71)
34 4a53_A EDC3; RNA binding prote 95.3 0.034 1.2E-06 37.0 5.1 39 17-55 8-47 (125)
35 3hfn_A ASL2047 protein; HFQ, S 94.8 0.061 2.1E-06 32.6 4.8 37 13-49 13-51 (72)
36 3hfo_A SSR3341 protein; HFQ, S 94.4 0.12 4E-06 31.1 5.5 40 10-49 7-49 (70)
37 2vxe_A CG10686-PA; EDC3, CAR-1 93.0 0.25 8.7E-06 30.9 5.4 41 18-58 10-51 (88)
38 2fb7_A SM-like protein, LSM-14 90.6 0.22 7.4E-06 31.7 3.1 47 12-58 10-57 (95)
39 1y96_B Gemin7, SIP3, GEM-assoc 89.9 1 3.5E-05 28.0 5.7 41 11-51 19-60 (85)
40 1ib8_A Conserved protein SP14. 88.9 0.44 1.5E-05 32.2 3.8 29 16-44 99-131 (164)
41 2vc8_A Enhancer of mRNA-decapp 88.0 1.1 3.8E-05 27.8 4.9 41 17-59 5-47 (84)
42 3rux_A BIRA bifunctional prote 85.3 1.4 4.7E-05 31.7 4.9 33 20-52 223-255 (270)
43 2xk0_A Polycomb protein PCL; t 84.5 3.7 0.00013 24.5 5.7 41 20-60 18-59 (69)
44 2e12_A SM-like motif, hypothet 68.6 9.8 0.00034 24.0 4.6 23 16-38 21-45 (101)
45 2ej9_A Putative biotin ligase; 65.7 11 0.00037 26.2 4.9 31 20-51 191-221 (237)
46 2rm4_A CG6311-PB, DM EDC3; enh 63.2 24 0.00083 22.4 5.7 36 18-54 9-45 (103)
47 2qqr_A JMJC domain-containing 60.5 10 0.00035 24.6 3.6 24 19-42 7-30 (118)
48 1bia_A BIRA bifunctional prote 59.0 16 0.00055 26.3 4.9 32 19-51 271-302 (321)
49 1ky9_A Protease DO, DEGP, HTRA 58.0 14 0.0005 27.9 4.7 31 22-52 111-141 (448)
50 4a8c_A Periplasmic PH-dependen 57.4 16 0.00054 27.5 4.8 31 22-52 88-118 (436)
51 2dxu_A Biotin--[acetyl-COA-car 56.9 9.2 0.00031 26.7 3.2 30 20-51 188-217 (235)
52 4hcz_A PHD finger protein 1; p 56.4 18 0.00062 20.8 3.8 40 20-59 6-48 (58)
53 2eay_A Biotin [acetyl-COA-carb 53.1 8.6 0.00029 26.7 2.5 30 20-51 187-216 (233)
54 3rkx_A Biotin-[acetyl-COA-carb 51.9 19 0.00064 26.3 4.3 32 19-51 277-308 (323)
55 3fb9_A Uncharacterized protein 51.3 25 0.00085 21.8 4.2 30 12-41 16-49 (90)
56 3bfm_A Biotin protein ligase-l 50.4 25 0.00084 24.2 4.5 27 20-51 193-219 (235)
57 3stj_A Protease DEGQ; serine p 48.7 23 0.00079 25.8 4.3 31 22-52 88-118 (345)
58 3pv2_A DEGQ; trypsin fold, PDZ 45.4 21 0.00071 27.1 3.8 31 22-52 102-132 (451)
59 2eqj_A Metal-response element- 45.2 45 0.0015 19.5 5.2 39 20-58 16-57 (66)
60 3sti_A Protease DEGQ; serine p 44.2 27 0.00093 24.2 4.0 31 22-52 88-118 (245)
61 3tee_A Flagella basal BODY P-r 42.7 16 0.00055 25.4 2.6 22 19-40 169-190 (219)
62 3lgi_A Protease DEGS; stress-s 42.6 37 0.0013 22.9 4.4 31 22-52 77-107 (237)
63 3tjo_A Serine protease HTRA1; 41.5 40 0.0014 22.8 4.4 31 22-52 87-117 (231)
64 1te0_A Protease DEGS; two doma 41.4 36 0.0012 24.1 4.3 31 22-52 66-96 (318)
65 1lcy_A HTRA2 serine protease; 41.2 38 0.0013 24.2 4.4 31 22-52 71-101 (325)
66 1x4r_A PARP14 protein; WWE dom 40.7 1.8 6.1E-05 27.5 -2.4 19 35-53 34-52 (99)
67 1y8t_A Hypothetical protein RV 40.6 34 0.0012 24.2 4.1 31 22-52 64-94 (324)
68 2m0o_A PHD finger protein 1; t 38.8 22 0.00077 21.6 2.4 39 20-58 29-70 (79)
69 3qo6_A Protease DO-like 1, chl 34.4 54 0.0018 23.6 4.4 31 22-52 77-107 (348)
70 1sg5_A ORF, hypothetical prote 33.3 15 0.00053 22.3 1.1 19 20-38 24-42 (86)
71 2e5q_A PHD finger protein 19; 33.1 61 0.0021 18.8 3.6 39 20-58 10-51 (63)
72 3num_A Serine protease HTRA1; 32.1 74 0.0025 22.6 4.8 31 22-52 70-100 (332)
73 4fln_A Protease DO-like 2, chl 31.9 44 0.0015 26.4 3.7 30 22-51 97-127 (539)
74 3frn_A Flagellar protein FLGA; 30.3 37 0.0013 24.9 2.9 22 19-40 238-260 (278)
75 2w5e_A Putative serine proteas 28.8 1.1E+02 0.0038 19.8 4.9 28 22-51 43-70 (163)
76 3kl9_A PEPA, glutamyl aminopep 24.9 54 0.0019 24.0 3.0 24 18-41 96-119 (355)
77 3qx1_A FAS-associated factor 1 24.0 69 0.0024 18.3 2.8 21 22-42 8-28 (84)
78 3mkv_A Putative amidohydrolase 23.7 17 0.0006 23.9 0.1 24 22-45 399-422 (426)
79 3by7_A Uncharacterized protein 23.0 1.4E+02 0.0049 18.5 5.6 32 25-58 7-38 (100)
80 4g9s_B Inhibitor of G-type lys 22.4 39 0.0013 20.6 1.6 22 21-42 2-26 (111)
81 1l1j_A Heat shock protease HTR 21.6 32 0.0011 23.6 1.2 30 22-51 80-109 (239)
82 2e5p_A Protein PHF1, PHD finge 21.2 1.4E+02 0.0046 17.6 5.1 39 20-58 12-53 (68)
83 4b4t_U RPN8, 26S proteasome re 20.2 9.5 0.00032 28.1 -2.0 56 1-57 1-56 (338)
84 1nvp_D Transcription initiatio 20.2 1.1E+02 0.0037 19.2 3.3 27 29-55 52-81 (108)
No 1
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.89 E-value=3.9e-23 Score=132.11 Aligned_cols=79 Identities=51% Similarity=0.833 Sum_probs=58.7
Q ss_pred ccccCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccc-eeeeeeeeeeeEEecCC
Q 034752 6 ESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYE-EIVRVCCNLKILLLNFK 84 (85)
Q Consensus 6 ~~~~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~-~~~~~~r~lg~ill~G~ 84 (85)
......|+++|+.+++++|+|+|++|+.|+|+|.|||+||||+|+||.|++...+++.+..+ ......|+||+++|||+
T Consensus 4 ~~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~ 83 (93)
T 4emg_A 4 AQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGD 83 (93)
T ss_dssp -----CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGG
T ss_pred ccccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCC
Confidence 35678999999999999999999999999999999999999999999999987544322111 11235799999999996
No 2
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.89 E-value=1.1e-22 Score=127.21 Aligned_cols=71 Identities=34% Similarity=0.594 Sum_probs=62.7
Q ss_pred CccccccccCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEE
Q 034752 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILL 80 (85)
Q Consensus 1 m~~~~~~~~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~il 80 (85)
|| .|......|+++|.++++++|+|+|+||++|+|+|.|||+|||++|+||.|++.+ ...++||.++
T Consensus 6 ms-~~~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~------------~~~~~lg~v~ 72 (83)
T 1mgq_A 6 VS-SQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG------------EVTRRLGTVL 72 (83)
T ss_dssp -----CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT------------EEEEEEEEEE
T ss_pred cc-cccccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC------------CcccCCCEEE
Confidence 67 5888899999999999999999999999999999999999999999999999753 2478999999
Q ss_pred ecCC
Q 034752 81 LNFK 84 (85)
Q Consensus 81 l~G~ 84 (85)
+||+
T Consensus 73 IRG~ 76 (83)
T 1mgq_A 73 IRGD 76 (83)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 9996
No 3
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.88 E-value=1.7e-22 Score=125.63 Aligned_cols=71 Identities=28% Similarity=0.441 Sum_probs=57.9
Q ss_pred CccccccccCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEE
Q 034752 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILL 80 (85)
Q Consensus 1 m~~~~~~~~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~il 80 (85)
||+..+.....|+++|.++++++|+|+|++|++|+|+|.|||+||||+|+||.|+ .+ ...++||+++
T Consensus 1 m~~~~~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~------------~~~~~lg~v~ 67 (81)
T 1i8f_A 1 MASDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-ID------------GNVYKRGTMV 67 (81)
T ss_dssp ---------CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ET------------TEEEEEEEEE
T ss_pred CCcccCccccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cC------------CcccCCCEEE
Confidence 8998888899999999999999999999999999999999999999999999998 21 2378999999
Q ss_pred ecCC
Q 034752 81 LNFK 84 (85)
Q Consensus 81 l~G~ 84 (85)
+||+
T Consensus 68 iRG~ 71 (81)
T 1i8f_A 68 VRGE 71 (81)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 9996
No 4
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.87 E-value=4.3e-22 Score=127.95 Aligned_cols=72 Identities=31% Similarity=0.451 Sum_probs=57.9
Q ss_pred ccccccccCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEe
Q 034752 2 ASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLL 81 (85)
Q Consensus 2 ~~~~~~~~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill 81 (85)
|++....+..|+++|+++++++|+|+|++|++|+|+|.|||+||||+|+||+|++.. + ...+.||.++|
T Consensus 11 ~~~~~~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~---~--------~~~~~lg~v~I 79 (94)
T 4emk_A 11 SQDPMSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV---T--------GVTEKHSEMLL 79 (94)
T ss_dssp ---------CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT---T--------CCEEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC---C--------CcEeEcCEEEE
Confidence 445666889999999999999999999999999999999999999999999999731 1 23789999999
Q ss_pred cCC
Q 034752 82 NFK 84 (85)
Q Consensus 82 ~G~ 84 (85)
||+
T Consensus 80 RG~ 82 (94)
T 4emk_A 80 NGN 82 (94)
T ss_dssp CST
T ss_pred cCC
Confidence 997
No 5
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-21 Score=125.56 Aligned_cols=73 Identities=33% Similarity=0.632 Sum_probs=64.2
Q ss_pred cccCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 7 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 7 ~~~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
.-+..|+++|.++++++|+|+|++||.|+|+|.|||+||||+|+||.|++...+..+ .....|+||+++|||+
T Consensus 6 ~~~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~-----~~~~~r~lG~v~IRG~ 78 (96)
T 3bw1_A 6 HHMETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEE-----LSESERRCEMVFIRGD 78 (96)
T ss_dssp CCCCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTC-----CCEEEEEEEEEEECGG
T ss_pred hhhhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccc-----cCcceeEcCEEEECCC
Confidence 357889999999999999999999999999999999999999999999988754321 1245899999999996
No 6
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.87 E-value=4.6e-22 Score=131.61 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=56.3
Q ss_pred ccccccCChHHHHHhhc--CCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCcccc--ceeeeeeeeeeeE
Q 034752 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETY--EEIVRVCCNLKIL 79 (85)
Q Consensus 4 ~~~~~~~~Pl~~L~~~l--~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~--~~~~~~~r~lg~i 79 (85)
+++..+..|+++|..++ +++|+|.|++|+.|+|+|.|||+||||+|+||.|++...+.++++. .+.....|+||++
T Consensus 20 e~~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v 99 (118)
T 1b34_B 20 EEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKM 99 (118)
T ss_dssp ------CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEE
T ss_pred hhhhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeE
Confidence 34557889999999999 5999999999999999999999999999999999987654322111 1223457899999
Q ss_pred EecCC
Q 034752 80 LLNFK 84 (85)
Q Consensus 80 ll~G~ 84 (85)
+|||+
T Consensus 100 ~IRG~ 104 (118)
T 1b34_B 100 FLRGD 104 (118)
T ss_dssp EECGG
T ss_pred EEcCC
Confidence 99996
No 7
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.86 E-value=2.4e-21 Score=119.23 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=59.8
Q ss_pred ccCChHHHHHhhcCCEEEEEEcCC-eEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 8 AVKEPLDLIRLSLDERIYVKLRSD-RELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 8 ~~~~Pl~~L~~~l~k~V~V~L~~g-~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
++..|+++|.++++++|+|+|++| ++|+|+|.|||+|||++|+||+|++.+ ...++||.+++||+
T Consensus 2 ~m~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~------------~~~~~lg~v~iRG~ 67 (77)
T 1ljo_A 2 AMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE------------EKVRSLGEIVLRGN 67 (77)
T ss_dssp CCCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT------------EEEEEEEEEEECGG
T ss_pred CccchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC------------CcEeECCeEEEeCC
Confidence 467999999999999999999999 999999999999999999999998742 24789999999996
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.85 E-value=4.3e-21 Score=117.41 Aligned_cols=63 Identities=35% Similarity=0.559 Sum_probs=58.5
Q ss_pred CChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 10 ~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
..|+++|.++++++|+|+|+||+.|+|+|.|||+|||++|+||.|++.+ ...+++|.+++||+
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~------------~~~~~lg~v~iRG~ 65 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG------------EVVKRYGKIVIRGD 65 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT------------EEEEEEEEEEECGG
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC------------CceeECCEEEECCC
Confidence 4799999999999999999999999999999999999999999999753 34789999999996
No 9
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.85 E-value=5.9e-21 Score=117.16 Aligned_cols=63 Identities=33% Similarity=0.594 Sum_probs=58.4
Q ss_pred CChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 10 ~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
..|+++|.++++++|+|+|++|+.|+|+|.|||+|||++|+||.|++.+ ...+++|.+++||+
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~------------~~~~~lg~v~iRG~ 65 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG------------EVVRKVGSVVIRGD 65 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT------------EEEEEEEEEEECGG
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC------------CcEeECCEEEECCC
Confidence 4799999999999999999999999999999999999999999999753 24789999999996
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.85 E-value=4.6e-21 Score=117.66 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=57.7
Q ss_pred CChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 10 ~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
..|+++|+++++++|+|+|++|++|+|+|.|||+|||++|+||.|+..+ ...+++|.+++||+
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~------------~~~~~lg~v~iRG~ 65 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNG------------KKTNVYGDAFIRGN 65 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETT------------EEEEEEEEEEEEGG
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecC------------CcccEecEEEEcCC
Confidence 5799999999999999999999999999999999999999999998642 23689999999996
No 11
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.85 E-value=1.1e-21 Score=130.26 Aligned_cols=77 Identities=30% Similarity=0.469 Sum_probs=60.4
Q ss_pred ccCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccc--c-ceeeeeeeeeeeEEecCC
Q 034752 8 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDET--Y-EEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 8 ~~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~--~-~~~~~~~r~lg~ill~G~ 84 (85)
.+..|+++|.++++++|+|+|++|+.|+|+|.|||+||||+|+||+|++...+.++++ . .......|+||+++|||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 5679999999999999999999999999999999999999999999998652211111 0 111123899999999996
No 12
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.84 E-value=1.1e-20 Score=117.22 Aligned_cols=63 Identities=30% Similarity=0.543 Sum_probs=58.3
Q ss_pred CChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 10 ~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
..|+++|.++++++|+|+|+||++|+|+|.|||+|||++|+||.|++.+ ...++||++++||+
T Consensus 8 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~------------~~~~~lg~v~iRG~ 70 (81)
T 1th7_A 8 ETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD------------GSGKKLGTIVIRGD 70 (81)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS------------SCEEEEEEEEECGG
T ss_pred cchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC------------CceeECCEEEECCC
Confidence 5799999999999999999999999999999999999999999999753 23689999999996
No 13
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.84 E-value=6.6e-21 Score=125.75 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=49.1
Q ss_pred ccccccCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecC
Q 034752 4 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNF 83 (85)
Q Consensus 4 ~~~~~~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G 83 (85)
.++.+...|...|.++++++|+|+|++||+|+|+|.|||+||||+|+||.|++...+.. +.....|+||+++|||
T Consensus 16 ~~~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~-----~~~~~~r~lG~v~IRG 90 (113)
T 4emk_C 16 PTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-----KLTGAIRKLGLVVVRG 90 (113)
T ss_dssp ----------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC--------------CCEEEEEEEEECT
T ss_pred CccCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCc-----ccccceeEccEEEECC
Confidence 34567778889999999999999999999999999999999999999999998754210 1234589999999999
Q ss_pred C
Q 034752 84 K 84 (85)
Q Consensus 84 ~ 84 (85)
+
T Consensus 91 ~ 91 (113)
T 4emk_C 91 T 91 (113)
T ss_dssp T
T ss_pred C
Confidence 7
No 14
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.84 E-value=6.9e-21 Score=120.18 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=58.2
Q ss_pred ChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 11 ~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
+|.++|.++++++|+|+|++|++|+|+|.|||+||||+|+||.|++.....+.+ .+.....|+||+++|||+
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~--~~~~~~~~~lg~v~iRG~ 75 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSK--QAEREEKRVLGLVLLRGE 75 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTT--SCCEEEEEEEEEEEECGG
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccc--cccCccEeECCEEEECCC
Confidence 578899999999999999999999999999999999999999998754322111 123456899999999996
No 15
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.84 E-value=3.5e-21 Score=123.17 Aligned_cols=68 Identities=21% Similarity=0.412 Sum_probs=59.6
Q ss_pred ccccCChHHHHHhhcCCEEEEEE----cCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEe
Q 034752 6 ESAVKEPLDLIRLSLDERIYVKL----RSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLL 81 (85)
Q Consensus 6 ~~~~~~Pl~~L~~~l~k~V~V~L----~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill 81 (85)
+..+..|+++|.++++++|+|++ ++|++|+|+|.|||+||||+|+||+|++... ...++||.++|
T Consensus 11 ~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~-----------~~~~~lg~v~i 79 (92)
T 3s6n_E 11 QKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT-----------KSRKQLGRIML 79 (92)
T ss_dssp ---CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSS-----------CCEEEEEEEEE
T ss_pred ceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCC-----------CceeEcCeEEE
Confidence 45689999999999999999999 9999999999999999999999999997531 23789999999
Q ss_pred cCC
Q 034752 82 NFK 84 (85)
Q Consensus 82 ~G~ 84 (85)
||+
T Consensus 80 RG~ 82 (92)
T 3s6n_E 80 KGD 82 (92)
T ss_dssp CGG
T ss_pred eCC
Confidence 996
No 16
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.84 E-value=1.8e-20 Score=118.17 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=58.1
Q ss_pred cCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 9 ~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
...|+++|+++++++|+|+|++|++|+|+|.|||+||||+|+||.|+.++ ...+++|.++|||+
T Consensus 4 ~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g------------~~~~~lg~v~IRG~ 67 (86)
T 3s6n_F 4 PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDG------------ALSGHLGEVLIRCN 67 (86)
T ss_dssp CCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT------------EEEEEESSEEECGG
T ss_pred CcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCC------------ceeeEccEEEEeCC
Confidence 45799999999999999999999999999999999999999999998532 23689999999996
No 17
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.83 E-value=9.9e-21 Score=121.09 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=52.5
Q ss_pred cccccCChHHHHHhhcCCEEEEEEcCC-eEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecC
Q 034752 5 EESAVKEPLDLIRLSLDERIYVKLRSD-RELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNF 83 (85)
Q Consensus 5 ~~~~~~~Pl~~L~~~l~k~V~V~L~~g-~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G 83 (85)
++.....|+++|.++++++|+|+|++| ++|+|+|.|||+||||+|+||+|++.+ ...++||.++|||
T Consensus 15 ~~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~------------~~~~~lg~v~IRG 82 (93)
T 1n9r_A 15 SAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG------------VSHGTLGEIFIRC 82 (93)
T ss_dssp -----------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT------------EEEEECCSEEECG
T ss_pred cccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCC------------CeEeEcCEEEEcC
Confidence 344668899999999999999999999 999999999999999999999998632 2367999999999
Q ss_pred C
Q 034752 84 K 84 (85)
Q Consensus 84 ~ 84 (85)
+
T Consensus 83 ~ 83 (93)
T 1n9r_A 83 N 83 (93)
T ss_dssp G
T ss_pred C
Confidence 6
No 18
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.83 E-value=3.5e-20 Score=114.05 Aligned_cols=64 Identities=11% Similarity=0.198 Sum_probs=57.4
Q ss_pred cCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 9 ~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
...|+++|+++++++|+|+|++|++|+|+|.|||.|||++|+||+|+..+ ...+++|++++||+
T Consensus 3 ~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~------------~~~~~lg~v~IRG~ 66 (75)
T 1d3b_A 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD------------GRVAQLEQVYIRGC 66 (75)
T ss_dssp -CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT------------SCEEEEEEEEECGG
T ss_pred ccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCC------------CcEEEcCeEEEeCC
Confidence 46799999999999999999999999999999999999999999998521 12789999999996
No 19
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.81 E-value=3.6e-20 Score=113.99 Aligned_cols=62 Identities=18% Similarity=0.378 Sum_probs=45.8
Q ss_pred ChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 11 ~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
.|.++|.++++++|+|+|++|++|+|+|.|||+|||++|+||.|++.+. ..+++|.+++||+
T Consensus 4 ~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~------------~~~~lg~v~iRG~ 65 (76)
T 3s6n_G 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG------------QQNNIGMVVIRGN 65 (76)
T ss_dssp ----------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----------------CBSSEEECSS
T ss_pred cchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCC------------cEeEcCEEEECCC
Confidence 3678999999999999999999999999999999999999999986531 2689999999996
No 20
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.80 E-value=1.5e-19 Score=118.08 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=47.4
Q ss_pred cCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 9 ~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
-..|+++|+++++++|+|+|++|++|+|+|.|||.||||+|+||+|+..+. ...+++|.++|||+
T Consensus 14 ~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg-----------~~~~~lg~v~IRG~ 78 (105)
T 4emh_A 14 PMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDG-----------DKFFRLPECYIRGN 78 (105)
T ss_dssp ------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS-----------CEEEEEEEEEECGG
T ss_pred CCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCC-----------ceeeEcCeEEEeCC
Confidence 357999999999999999999999999999999999999999999974321 23688999999996
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.79 E-value=3.2e-19 Score=130.04 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=61.2
Q ss_pred CChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 10 ~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
.++...|.++++++|+|+|+|||+|+|+|++||+||||+|+||+|++...+++++ +......|+||+++|||+
T Consensus 3 v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k--~~~~~~~R~LGlV~IRGd 75 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSK--QAEREEKRVLGLVLLRGE 75 (231)
T ss_pred cCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccc--cccccceeEeceEEECCC
Confidence 4677889999999999999999999999999999999999999999863222211 123456899999999997
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.77 E-value=9e-19 Score=116.08 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=56.3
Q ss_pred ChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 11 ~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
.|+++|+++++++|+|+|++|++|+|+|.+||+||||+|+||+|+..+ ...++||.++|||+
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~------------~~~~~lg~v~IRG~ 63 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN------------REPVQLETLSIRGN 63 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTT------------SCCEEEEEEEECGG
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCC------------CceeEcceEEEcCC
Confidence 699999999999999999999999999999999999999999998532 12589999999996
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.74 E-value=8.4e-18 Score=112.84 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=57.0
Q ss_pred cCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 9 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 9 ~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
...|+++|+++++++|+|+|++|++|+|+|.+||.||||+|+||+|+..+- ...++|+++|||+
T Consensus 3 ~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g------------~~~~l~~v~IRGn 66 (126)
T 2y9a_D 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG------------RVAQLEQVYIRGS 66 (126)
T ss_dssp -CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTS------------CCEEEEEEEECGG
T ss_pred cccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCC------------cEeecccEEEeCC
Confidence 367999999999999999999999999999999999999999999975211 1679999999996
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.66 E-value=1.4e-16 Score=107.29 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=51.4
Q ss_pred HHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEeccccCccccceeeeeeeeeeeEEecCC
Q 034752 13 LDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRVCCNLKILLLNFK 84 (85)
Q Consensus 13 l~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~~~~~~~~~~~~~~~~r~lg~ill~G~ 84 (85)
.++|.++++++|+|+|++|+.|+|+|.|||+||||+|+||.|+. .+++|.++|||+
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~----------------~~~lg~v~IRG~ 57 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA----------------GEKFNRVFIMYR 57 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT----------------CCEEEEEEECGG
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc----------------CCEeceEEEeCC
Confidence 46899999999999999999999999999999999999999961 258999999996
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.61 E-value=1.3e-07 Score=59.80 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=38.9
Q ss_pred CChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEc-CccceEecce
Q 034752 10 KEPLDLIRLSLDERIYVKLRSDRELRGKLHAYD-QHLNMILGDV 52 (85)
Q Consensus 10 ~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD-~~mNlvL~n~ 52 (85)
.+|. .|.++++|.|.|.|.||++|+|.|.+|| ...|++|.|+
T Consensus 7 ~~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 7 KGPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp SCHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred CCHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec
Confidence 5677 5669999999999999999999999999 9999999998
No 26
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.45 E-value=0.00019 Score=44.55 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=29.0
Q ss_pred HHHHHhhc--CCEEEEEEcCCeEEEEEEEEEcCccceE
Q 034752 13 LDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMI 48 (85)
Q Consensus 13 l~~L~~~l--~k~V~V~L~~g~~~~G~L~~fD~~mNlv 48 (85)
-.+|+.+. ..+|+|.|.+|..++|.+.+||.|+=|+
T Consensus 10 d~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 10 DPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 34555544 5779999999999999999999999443
No 27
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.43 E-value=0.00028 Score=44.05 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=29.4
Q ss_pred HHHHhhc--CCEEEEEEcCCeEEEEEEEEEcCccceEec
Q 034752 14 DLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILG 50 (85)
Q Consensus 14 ~~L~~~l--~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~ 50 (85)
.+|+.+. ..+|+|.|.||..++|.+.+||+|+ +.|+
T Consensus 10 ~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ft-VlL~ 47 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 47 (82)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceE-EEEe
Confidence 4555444 6899999999999999999999999 4444
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.42 E-value=0.00031 Score=42.94 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHHHHhhc--CCEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 13 LDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 13 l~~L~~~l--~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
-.+|+.+. ..+|+|.|.||..++|.+.+||.|+ +.|++
T Consensus 11 d~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~ 50 (74)
T 2ylb_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKN 50 (74)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEEC
Confidence 45666666 6899999999999999999999999 44443
No 29
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.26 E-value=0.00037 Score=45.22 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=29.8
Q ss_pred HHHHHhhcC--CEEEEEEcCCeEEEEEEEEEcCccceEe
Q 034752 13 LDLIRLSLD--ERIYVKLRSDRELRGKLHAYDQHLNMIL 49 (85)
Q Consensus 13 l~~L~~~l~--k~V~V~L~~g~~~~G~L~~fD~~mNlvL 49 (85)
-.+|+.+.. .+|+|.|.+|..++|.+.+||.|+=|+-
T Consensus 11 d~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 346666554 6899999999999999999999994443
No 30
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.12 E-value=0.00052 Score=42.44 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=28.9
Q ss_pred HHHHhhc--CCEEEEEEcCCeEEEEEEEEEcCccceE
Q 034752 14 DLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMI 48 (85)
Q Consensus 14 ~~L~~~l--~k~V~V~L~~g~~~~G~L~~fD~~mNlv 48 (85)
.+|+.+. ..+|+|.|.||..++|.+.+||+|+=++
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL 50 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLL 50 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 3455444 6899999999999999999999999444
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.10 E-value=0.0013 Score=40.51 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=30.6
Q ss_pred HHHHHhhc--CCEEEEEEcCCeEEEEEEEEEcCccceEe
Q 034752 13 LDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMIL 49 (85)
Q Consensus 13 l~~L~~~l--~k~V~V~L~~g~~~~G~L~~fD~~mNlvL 49 (85)
-.+|+.+. ..+|+|.|.||..++|.+.+||.|+=|+-
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~ 47 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLN 47 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 34566665 68999999999999999999999994443
No 32
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.86 E-value=0.0022 Score=39.00 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=25.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCccceE
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQHLNMI 48 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~mNlv 48 (85)
-+.+|+|.|.||..++|.+.|||+|+=++
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 45889999999999999999999999444
No 33
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=95.53 E-value=0.032 Score=33.52 Aligned_cols=43 Identities=21% Similarity=0.487 Sum_probs=34.0
Q ss_pred HHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEe
Q 034752 14 DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57 (85)
Q Consensus 14 ~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~ 57 (85)
..|.++.+++|-|...+...|+|+|.-||.-. +.|.|+..+..
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~G 51 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIG 51 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTE
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhc
Confidence 46788999999999999999999999999887 78899887643
No 34
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=95.28 E-value=0.034 Score=36.99 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.8
Q ss_pred HhhcCCEEEEEEcCCeEEEEEEEEEc-CccceEecceEEE
Q 034752 17 RLSLDERIYVKLRSDRELRGKLHAYD-QHLNMILGDVEEV 55 (85)
Q Consensus 17 ~~~l~k~V~V~L~~g~~~~G~L~~fD-~~mNlvL~n~~E~ 55 (85)
..+++..|.|.|++|..++|++..+| +.+=|.|.+|...
T Consensus 8 sqFlGy~V~v~LkDgs~~qG~I~~vd~k~LtL~~~~a~~s 47 (125)
T 4a53_A 8 ADFYGSNVEVLLNNDSKARGVITNFDSSNSILQLRLANDS 47 (125)
T ss_dssp HHHTTCEEEEEETTSCEEEEEEEEEETTTTEEEEEETTTE
T ss_pred HHhcCceEEEEECCCCEeeEEEEeecCCeeEEeccccccc
Confidence 47899999999999999999999998 3333333877443
No 35
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=94.76 E-value=0.061 Score=32.60 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=32.1
Q ss_pred HHHHHhhcC--CEEEEEEcCCeEEEEEEEEEcCccceEe
Q 034752 13 LDLIRLSLD--ERIYVKLRSDRELRGKLHAYDQHLNMIL 49 (85)
Q Consensus 13 l~~L~~~l~--k~V~V~L~~g~~~~G~L~~fD~~mNlvL 49 (85)
...|++++. .+|.|+|.+|..++|.+.-+|.|+=++.
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~ 51 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIA 51 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEE
Confidence 678888885 7889999999999999999999994444
No 36
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.41 E-value=0.12 Score=31.15 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=33.4
Q ss_pred CCh-HHHHHhhcC--CEEEEEEcCCeEEEEEEEEEcCccceEe
Q 034752 10 KEP-LDLIRLSLD--ERIYVKLRSDRELRGKLHAYDQHLNMIL 49 (85)
Q Consensus 10 ~~P-l~~L~~~l~--k~V~V~L~~g~~~~G~L~~fD~~mNlvL 49 (85)
..| ...|++++. .+|.|.|.+|..++|.+.-+|.|+=++.
T Consensus 7 ~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 7 GLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp SCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 345 677888874 8899999999999999999999995554
No 37
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=93.03 E-value=0.25 Score=30.94 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=36.0
Q ss_pred hhcCCEEEEEEcCCeEEEEEEEEEc-CccceEecceEEEEec
Q 034752 18 LSLDERIYVKLRSDRELRGKLHAYD-QHLNMILGDVEEVVTT 58 (85)
Q Consensus 18 ~~l~k~V~V~L~~g~~~~G~L~~fD-~~mNlvL~n~~E~~~~ 58 (85)
.|+|++|.+..+.+-+|+|+|...| +---+.|.||..+-++
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTE 51 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTE 51 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCT
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCc
Confidence 4789999999999999999999999 5557999999887655
No 38
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=90.61 E-value=0.22 Score=31.66 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=35.7
Q ss_pred hHHHHHhhcCCEEEEEEcCCeEEEEEEEEEc-CccceEecceEEEEec
Q 034752 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYD-QHLNMILGDVEEVVTT 58 (85)
Q Consensus 12 Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD-~~mNlvL~n~~E~~~~ 58 (85)
|..--..|+|++|.+..+.+-+|+|+|...| +---+.|.||..+-++
T Consensus 10 ~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTE 57 (95)
T 2fb7_A 10 DPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTE 57 (95)
T ss_dssp ------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCC
T ss_pred CCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEeccc
Confidence 4444567999999999999999999999999 4556889998876554
No 39
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=89.87 E-value=1 Score=27.97 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=34.3
Q ss_pred ChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEc-CccceEecc
Q 034752 11 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYD-QHLNMILGD 51 (85)
Q Consensus 11 ~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD-~~mNlvL~n 51 (85)
+-+.+|....+++|.+.+.++-++.|+..++| ...|+..++
T Consensus 19 RfLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~ 60 (85)
T 1y96_B 19 RYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQ 60 (85)
T ss_dssp HHHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhh
Confidence 34667777889999999999999999999999 556777655
No 40
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=88.88 E-value=0.44 Score=32.19 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHhhcCCEEEEEEc----CCeEEEEEEEEEcCc
Q 034752 16 IRLSLDERIYVKLR----SDRELRGKLHAYDQH 44 (85)
Q Consensus 16 L~~~l~k~V~V~L~----~g~~~~G~L~~fD~~ 44 (85)
+.+++|+.|.|++. +.+.|+|+|.++|.-
T Consensus 99 f~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 99 VAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 34789999999993 458999999999964
No 41
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=87.97 E-value=1.1 Score=27.76 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=35.1
Q ss_pred HhhcCCEEEEEEcCCe-EEEEEEEEEcCc-cceEecceEEEEecc
Q 034752 17 RLSLDERIYVKLRSDR-ELRGKLHAYDQH-LNMILGDVEEVVTTV 59 (85)
Q Consensus 17 ~~~l~k~V~V~L~~g~-~~~G~L~~fD~~-mNlvL~n~~E~~~~~ 59 (85)
.+|+|+.|.+..++.- .|+|.|..+|.. -++.|.+| +.+++
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~--f~NG~ 47 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP--FHNGV 47 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE--EETTE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh--hhCCC
Confidence 4789999999999998 999999999965 47999998 45554
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=85.27 E-value=1.4 Score=31.68 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=29.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
++++|+|.+.+|..++|+..|+|..=.|+++..
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 489999998889999999999999999988653
No 43
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=84.46 E-value=3.7 Score=24.54 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.3
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCcc-ceEecceEEEEeccc
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQHL-NMILGDVEEVVTTVE 60 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~m-NlvL~n~~E~~~~~~ 60 (85)
++.-|.++-+||+-|-|+++...+.- =+..+|-.+.|..-+
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEECTT
T ss_pred cCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeeeHH
Confidence 57899999999999999998777433 345588888887654
No 44
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=68.62 E-value=9.8 Score=23.98 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHhhcC--CEEEEEEcCCeEEEEEE
Q 034752 16 IRLSLD--ERIYVKLRSDRELRGKL 38 (85)
Q Consensus 16 L~~~l~--k~V~V~L~~g~~~~G~L 38 (85)
+...++ .+|++.|.||+.+.|++
T Consensus 21 ~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 21 WVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHhhCCeeEEEEEEcCCCeEeeee
Confidence 334454 78999999999999997
No 45
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=65.67 E-value=11 Score=26.24 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=27.0
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
++++|+|...++..++|+..|+|..=.|+ +.
T Consensus 191 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 191 IGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 58999999888777999999999998887 53
No 46
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=63.17 E-value=24 Score=22.36 Aligned_cols=36 Identities=3% Similarity=-0.054 Sum_probs=30.6
Q ss_pred hhcCCEEEEEEcCCe-EEEEEEEEEcCccceEecceEE
Q 034752 18 LSLDERIYVKLRSDR-ELRGKLHAYDQHLNMILGDVEE 54 (85)
Q Consensus 18 ~~l~k~V~V~L~~g~-~~~G~L~~fD~~mNlvL~n~~E 54 (85)
+|+|+.|.|...+-- .|+|.+...|. -++.|..|..
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr 45 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR 45 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh
Confidence 789999999999875 99999999995 3488887654
No 47
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=60.52 E-value=10 Score=24.58 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=21.3
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEEc
Q 034752 19 SLDERIYVKLRSDRELRGKLHAYD 42 (85)
Q Consensus 19 ~l~k~V~V~L~~g~~~~G~L~~fD 42 (85)
.+|++|+.+.++|+-|+|++.+..
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 368999999999999999998765
No 48
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=59.00 E-value=16 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=26.9
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 19 ~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
.+|++|+|... +..+.|+..|+|..=.|+++.
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEE
Confidence 35899999865 558999999999999998864
No 49
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=58.04 E-value=14 Score=27.92 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.2
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..|.|.+.+|+.|.+++.++|...+|.+-.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999999887544
No 50
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=57.40 E-value=16 Score=27.48 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=27.5
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.|.+++.++|...+|.|-.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999998887554
No 51
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=56.90 E-value=9.2 Score=26.68 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=23.4
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
++++|+|...++ ++|+..|+|..=.|+++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 689999987766 999999999999999864
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=56.39 E-value=18 Score=20.79 Aligned_cols=40 Identities=8% Similarity=0.068 Sum_probs=31.6
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCc---cceEecceEEEEecc
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQH---LNMILGDVEEVVTTV 59 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~---mNlvL~n~~E~~~~~ 59 (85)
.+.-|.++-.||+-|-|++..+|.. +=+..+|-.+.|..-
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~ 48 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLW 48 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEG
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEh
Confidence 3678999999999999999998854 445567777777654
No 53
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=53.07 E-value=8.6 Score=26.69 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=25.3
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
++++|+|...++ ++|+..|+|..=.|+++.
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 589999876544 999999999999998864
No 54
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=51.86 E-value=19 Score=26.27 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.0
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 19 SLDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 19 ~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
.++++|+|... +..+.|+..|+|..=.|+++.
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 35799999764 568999999999999998864
No 55
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=51.28 E-value=25 Score=21.77 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=24.6
Q ss_pred hHHHHHhhcCCEEEEEEcCCe----EEEEEEEEE
Q 034752 12 PLDLIRLSLDERIYVKLRSDR----ELRGKLHAY 41 (85)
Q Consensus 12 Pl~~L~~~l~k~V~V~L~~g~----~~~G~L~~f 41 (85)
.-..|...+|++|.++.+.|| +-.|.|...
T Consensus 16 IK~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 16 IKEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 345677889999999999997 788998754
No 56
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=50.38 E-value=25 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.5
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
++++|+| +| ++|+..|+|..=.|+++.
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 5899999 45 999999999999999864
No 57
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=48.70 E-value=23 Score=25.79 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=26.7
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.|.+++.++|...+|.|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4688999999999999999999988876544
No 58
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=45.36 E-value=21 Score=27.06 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.0
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.|.+++.++|...+|.|-..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4688999999999999999999998877554
No 59
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=45.24 E-value=45 Score=19.52 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=29.9
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCc---cceEecceEEEEec
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQH---LNMILGDVEEVVTT 58 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~---mNlvL~n~~E~~~~ 58 (85)
.|..|+.+-.||+-|.|++..+++. +=+..+|-.++|..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~ 57 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVL 57 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEE
Confidence 4788999999999999999999964 33444666666543
No 60
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=44.18 E-value=27 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=26.0
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
.++.|.+.+|+.+.+.+.++|....|.|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4688999999999999999999888876544
No 61
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=42.74 E-value=16 Score=25.40 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.4
Q ss_pred hcCCEEEEEEcCCeEEEEEEEE
Q 034752 19 SLDERIYVKLRSDRELRGKLHA 40 (85)
Q Consensus 19 ~l~k~V~V~L~~g~~~~G~L~~ 40 (85)
.+|..|+|++.+|+.+.|++.+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 5689999999999999999865
No 62
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=42.60 E-value=37 Score=22.89 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.7
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.+.+.+.++|....|.|-..
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999888776443
No 63
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=41.50 E-value=40 Score=22.81 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=26.9
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.+.+.+.++|....|.|-..
T Consensus 87 ~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 87 HRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred ceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 6789999999999999999999888877543
No 64
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=41.42 E-value=36 Score=24.11 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=26.5
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.+.+.+.++|...+|.|-..
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 4688999999999999999999888877543
No 65
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=41.20 E-value=38 Score=24.18 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=26.6
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.+.+++.++|....|.|-..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 5789999999999999999999888877543
No 66
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.73 E-value=1.8 Score=27.47 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.8
Q ss_pred EEEEEEEcCccceEecceE
Q 034752 35 RGKLHAYDQHLNMILGDVE 53 (85)
Q Consensus 35 ~G~L~~fD~~mNlvL~n~~ 53 (85)
.|+..+||.-.|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4668999999999999986
No 67
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=40.61 E-value=34 Score=24.19 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=26.7
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.+.+++.+||...+|.|-..
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 4799999999999999999999888877543
No 68
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=38.76 E-value=22 Score=21.57 Aligned_cols=39 Identities=8% Similarity=0.082 Sum_probs=30.8
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcC---ccceEecceEEEEec
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQ---HLNMILGDVEEVVTT 58 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~---~mNlvL~n~~E~~~~ 58 (85)
.+.-|.++-+||+-|-|++.-.|. .+=+..+|-.+.|..
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~ 70 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 70 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEE
Confidence 578999999999999999998885 344556777776654
No 69
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=34.44 E-value=54 Score=23.58 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=26.8
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.+.+.+.++|....|.|=..
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 5789999999999999999999888877543
No 70
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=33.26 E-value=15 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.4
Q ss_pred cCCEEEEEEcCCeEEEEEE
Q 034752 20 LDERIYVKLRSDRELRGKL 38 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L 38 (85)
.+.+|+|.++||..+.|+.
T Consensus 24 ~~~~l~l~l~dGe~~~g~a 42 (86)
T 1sg5_A 24 HHLMLTLELKDGEKLQAKA 42 (86)
T ss_dssp TTTCEEEECTTTCCEEESS
T ss_pred cCCeEEEEEeCCCEEEEEE
Confidence 4689999999999998864
No 71
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.08 E-value=61 Score=18.82 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=30.8
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCc---cceEecceEEEEec
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQH---LNMILGDVEEVVTT 58 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~---mNlvL~n~~E~~~~ 58 (85)
.++-|..+-.||+-|-|++...|.. +=+..+|..+.|.-
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~ 51 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVL 51 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEEEEE
T ss_pred cCCEEEEEecCCCEEEEEEEEEecCCCEEEEEEccCceeEEE
Confidence 4688999999999999999999944 55556777776654
No 72
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=32.14 E-value=74 Score=22.57 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=26.7
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecce
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDV 52 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~ 52 (85)
..+.|.+.+|+.+.+.+.++|....|.|-..
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 5789999999999999999999888876543
No 73
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=31.87 E-value=44 Score=26.35 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=25.3
Q ss_pred CEEEEEEc-CCeEEEEEEEEEcCccceEecc
Q 034752 22 ERIYVKLR-SDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 22 k~V~V~L~-~g~~~~G~L~~fD~~mNlvL~n 51 (85)
..|.|.+. +|+.|.+++.++|....|.|-.
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 56888885 8999999999999998887643
No 74
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=30.30 E-value=37 Score=24.87 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=17.5
Q ss_pred hcCCEEEEE-EcCCeEEEEEEEE
Q 034752 19 SLDERIYVK-LRSDRELRGKLHA 40 (85)
Q Consensus 19 ~l~k~V~V~-L~~g~~~~G~L~~ 40 (85)
..|..|+|+ +.+|+.+.|++.+
T Consensus 238 a~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 238 YLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp CTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEEec
Confidence 568999999 9999999999864
No 75
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=28.79 E-value=1.1e+02 Score=19.82 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=22.6
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
..+.|.+ +|+.|..++. +|....|.|-.
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAlLk 70 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAFIT 70 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEEEE
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEEEE
Confidence 5678888 9999999999 89877766543
No 76
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=24.90 E-value=54 Score=24.02 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=19.0
Q ss_pred hhcCCEEEEEEcCCeEEEEEEEEE
Q 034752 18 LSLDERIYVKLRSDRELRGKLHAY 41 (85)
Q Consensus 18 ~~l~k~V~V~L~~g~~~~G~L~~f 41 (85)
.+.+++|+|..++|+.|.|++-.-
T Consensus 96 ~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 96 VVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TCSSCEEEEECTTSCEEEEEEC--
T ss_pred ccCCCEEEEEcCCCCEEEEEEeCc
Confidence 456899999999999999988543
No 77
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=24.00 E-value=69 Score=18.34 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=17.0
Q ss_pred CEEEEEEcCCeEEEEEEEEEc
Q 034752 22 ERIYVKLRSDRELRGKLHAYD 42 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD 42 (85)
-+|+|++.||..++.++..-|
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~ 28 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASN 28 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 367899999999999887554
No 78
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=23.71 E-value=17 Score=23.89 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=15.2
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCcc
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHL 45 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~m 45 (85)
..|.-.+++|+.|...|.|.|.|-
T Consensus 399 ~~v~~Vi~~G~vv~~~l~g~~G~~ 422 (426)
T 3mkv_A 399 EHIPLVMKDGRLFVNELEGHEGHH 422 (426)
T ss_dssp TTCCEEEETTEEEEECCC------
T ss_pred CCccEEEECCEEEECCccCCCCCC
Confidence 457677889999999999998763
No 79
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=22.96 E-value=1.4e+02 Score=18.52 Aligned_cols=32 Identities=6% Similarity=0.219 Sum_probs=26.6
Q ss_pred EEEEcCCeEEEEEEEEEcCccceEecceEEEEec
Q 034752 25 YVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTT 58 (85)
Q Consensus 25 ~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~~ 58 (85)
.|+|++|.++.|.+.-=|.. +.+.|..+.+..
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~ 38 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPM 38 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEE
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEe
Confidence 57899999999999966664 888999988854
No 80
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=22.40 E-value=39 Score=20.60 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=17.2
Q ss_pred CCEEEEEEcCC---eEEEEEEEEEc
Q 034752 21 DERIYVKLRSD---RELRGKLHAYD 42 (85)
Q Consensus 21 ~k~V~V~L~~g---~~~~G~L~~fD 42 (85)
++.|.|.+.-| .+++|+|.|+|
T Consensus 2 ~~~~~V~F~~G~~~a~v~G~I~g~~ 26 (111)
T 4g9s_B 2 GKNVNVEFRKGHSSAQYSGEIKGYD 26 (111)
T ss_dssp CCEEECCCCTTCSEEEEEEEEETTC
T ss_pred CcceEEEECCCCCCeEEEEEEeCCC
Confidence 46788888655 68999999887
No 81
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=21.63 E-value=32 Score=23.60 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=25.0
Q ss_pred CEEEEEEcCCeEEEEEEEEEcCccceEecc
Q 034752 22 ERIYVKLRSDRELRGKLHAYDQHLNMILGD 51 (85)
Q Consensus 22 k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n 51 (85)
..+.|.+.+|+.+.+++.++|....|.|-.
T Consensus 80 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllk 109 (239)
T 1l1j_A 80 DNITVTMLDGSKYDAEYIGGDEELDIAVIK 109 (239)
T ss_dssp SSCEEECTTSCEEEBCCCEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEE
Confidence 457888999999999999999888877644
No 82
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.17 E-value=1.4e+02 Score=17.55 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=30.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEcCc---cceEecceEEEEec
Q 034752 20 LDERIYVKLRSDRELRGKLHAYDQH---LNMILGDVEEVVTT 58 (85)
Q Consensus 20 l~k~V~V~L~~g~~~~G~L~~fD~~---mNlvL~n~~E~~~~ 58 (85)
.++-|..+-.||+-|-|++.-.|.+ +=+..+|..++|..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~ 53 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 53 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeeeee
Confidence 4688999999999999999999953 34555777777654
No 83
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.20 E-value=9.5 Score=28.13 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=35.5
Q ss_pred CccccccccCChHHHHHhhcCCEEEEEEcCCeEEEEEEEEEcCccceEecceEEEEe
Q 034752 1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVT 57 (85)
Q Consensus 1 m~~~~~~~~~~Pl~~L~~~l~k~V~V~L~~g~~~~G~L~~fD~~mNlvL~n~~E~~~ 57 (85)
||-.++.=...|+-+|+ ..+.-.|..-.....+.|.|.|...==.+-+.||.+...
T Consensus 1 ~s~~~~~V~vhPlVll~-I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~ 56 (338)
T 4b4t_U 1 MSLQHEKVTIAPLVLLS-ALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPF 56 (338)
T ss_dssp -CCCCSEEEECHHHHHH-HHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCE
T ss_pred CCCCCCEEEEecHHHHH-HHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEecc
Confidence 55555566677877774 222211222234567889999998766788899888754
No 84
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=20.15 E-value=1.1e+02 Score=19.24 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=20.9
Q ss_pred cCCeEEEEEE---EEEcCccceEecceEEE
Q 034752 29 RSDRELRGKL---HAYDQHLNMILGDVEEV 55 (85)
Q Consensus 29 ~~g~~~~G~L---~~fD~~mNlvL~n~~E~ 55 (85)
++...+.|.| .-.|+.|.++|.|+.-.
T Consensus 52 ksk~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 52 RNRVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccCCeEeeccCCccccCcEEEEEEeceEEE
Confidence 3446777877 56799999999998855
Done!