BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034753
         (85 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PP5|A Chain A, High-Resolution Structure Of The Trimeric ScarWAVE
          COMPLEX PRECURSOR Brk1
          Length = 73

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 39/54 (72%)

Query: 6  GITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKL 59
          G   +++    +Q DWE REFI  +S+N++++ EFL +FE +T++KL+ LNEKL
Sbjct: 1  GPLGSMSTKTNIQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKL 54


>pdb|3P8C|E Chain E, Structure And Control Of The Actin Regulatory Wave
          Complex
          Length = 75

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 31/43 (72%)

Query: 17 VQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKL 59
          +  DW NRE+I  I+ +++++ +FL  F+ + +S+LA LNEKL
Sbjct: 12 IHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKL 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,731,057
Number of Sequences: 62578
Number of extensions: 39780
Number of successful extensions: 86
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)