BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034753
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94JY4|BRK1_ARATH Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1
Length = 85
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 80/85 (94%)
Query: 1 MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLD 60
MA+AGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFE+TTKSKLA LNEKLD
Sbjct: 1 MAKAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFESTTKSKLASLNEKLD 60
Query: 61 TLERRLELLEVQVGTASANPHLFTT 85
LERRLE+LEVQV TA+ANP LF T
Sbjct: 61 LLERRLEMLEVQVSTATANPSLFAT 85
>sp|Q8RW98|BRK1_MAIZE Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1
Length = 84
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 75/83 (90%)
Query: 1 MARAGGITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLD 60
M R GG+ N VNVGIAVQADWENREFIS+ISLNVRRLF+FL++FEATTKSKLA LNEKLD
Sbjct: 1 MGRGGGMGNPVNVGIAVQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLD 60
Query: 61 TLERRLELLEVQVGTASANPHLF 83
LER+LE+LEVQVG+A+ NP +F
Sbjct: 61 ILERKLEVLEVQVGSATTNPSVF 83
>sp|Q84VA7|BRK1_ORYSJ Probable protein BRICK1 OS=Oryza sativa subsp. japonica
GN=Os02g0829900 PE=3 SV=1
Length = 86
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 76/85 (89%), Gaps = 2/85 (2%)
Query: 1 MARAGG--ITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEK 58
MARAGG + N VNVGIAVQADWENREFIS+ISLNVRRLF+FL++FEATTKSKLA LNEK
Sbjct: 1 MARAGGHGMGNPVNVGIAVQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEK 60
Query: 59 LDTLERRLELLEVQVGTASANPHLF 83
LD LER+LE+LEVQV +A+ NP +F
Sbjct: 61 LDILERKLEVLEVQVSSATTNPSVF 85
>sp|Q54X65|BRK1_DICDI Protein BRICK1 OS=Dictyostelium discoideum GN=brk1 PE=1 SV=1
Length = 68
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 44/60 (73%)
Query: 17 VQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGTA 76
+Q DWE REFI +S+N++++ EFL +FE +T++KL+ LNEKL L+R+++ LE T
Sbjct: 7 IQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKTV 66
>sp|A2BD66|BRK1B_XENLA Probable protein BRICK1-B OS=Xenopus laevis GN=brk1-b PE=3 SV=1
Length = 75
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 17 VQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQV 73
+ DW NRE+I I+ +++++ +FL F+ + +S+LA LNEKL TLERR+E +E +V
Sbjct: 12 IHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTTLERRIEYIEARV 68
>sp|Q6IQ86|BRK1_DANRE Probable protein BRICK1 OS=Danio rerio GN=brk1 PE=2 SV=1
Length = 75
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 17 VQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQV 73
+ DW NRE+I I+ +++++ +FL F+ + +S+LA LNEKL LERR+E +E +V
Sbjct: 12 IHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARV 68
>sp|Q6P7G6|BRK1A_XENLA Probable protein BRICK1-A OS=Xenopus laevis GN=brk1-a PE=3 SV=1
Length = 75
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 17 VQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQV 73
+ DW NRE+I I+ +++++ +FL F+ + +S+LA LNEKL LERR+E +E +V
Sbjct: 12 IHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARV 68
>sp|Q91VR8|BRK1_MOUSE Protein BRICK1 OS=Mus musculus GN=Brk1 PE=2 SV=1
Length = 75
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 17 VQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQV 73
+ DW NRE+I I+ +++++ +FL F+ + +S+LA LNEKL LERR+E +E +V
Sbjct: 12 IHQDWANREYIEIITSSIKKISDFLNSFDMSCRSRLATLNEKLTALERRIEYIEARV 68
>sp|Q8WUW1|BRK1_HUMAN Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1
Length = 75
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 17 VQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQV 73
+ DW NRE+I I+ +++++ +FL F+ + +S+LA LNEKL LERR+E +E +V
Sbjct: 12 IHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARV 68
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 10 AVNVGIAVQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERR 65
AV++ AV W+ E + V +LF+FL T S + LL E TL RR
Sbjct: 2073 AVHLLQAVLPSWDKTERARDMKCLVEKLFDFLGSLLTTCSSDVPLLRES--TLRRR 2126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,300,281
Number of Sequences: 539616
Number of extensions: 692690
Number of successful extensions: 2952
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2938
Number of HSP's gapped (non-prelim): 20
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)