Query 034753
Match_columns 85
No_of_seqs 61 out of 63
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 09:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pp5_A BRK1, protein brick1; t 100.0 4.4E-36 1.5E-40 195.1 8.7 72 7-78 2-73 (73)
2 3p8c_E Probable protein brick1 100.0 6.7E-35 2.3E-39 190.3 9.6 69 9-77 4-72 (75)
3 3ljm_A Coil Ser L9C; de novo d 95.4 0.023 7.8E-07 31.3 3.8 24 48-71 6-29 (31)
4 1aq5_A Matrilin-1, CMP, cartil 94.8 0.094 3.2E-06 31.2 5.5 34 40-73 13-46 (47)
5 2pnv_A Small conductance calci 90.1 0.54 1.8E-05 27.2 4.2 27 51-77 17-43 (43)
6 1zme_C Proline utilization tra 89.7 0.56 1.9E-05 27.0 4.2 26 50-75 44-69 (70)
7 2ovc_A Potassium voltage-gated 87.4 1.2 4.2E-05 24.6 4.3 24 46-69 6-29 (33)
8 1q08_A Zn(II)-responsive regul 86.3 3.8 0.00013 24.8 6.7 33 47-79 43-75 (99)
9 3swy_A Cyclic nucleotide-gated 86.1 0.7 2.4E-05 27.1 3.0 22 54-75 2-23 (46)
10 2er8_A Regulatory protein Leu3 85.2 0.49 1.7E-05 27.6 2.1 21 50-70 49-69 (72)
11 3p8c_E Probable protein brick1 83.6 5.4 0.00018 25.5 6.6 40 35-74 19-62 (75)
12 2qfa_B Borealin; three-helical 82.4 5.3 0.00018 24.5 6.0 33 35-67 5-37 (62)
13 3hfe_A Potassium voltage-gated 81.7 2 6.9E-05 23.6 3.5 21 49-69 9-29 (31)
14 3bj4_A Potassium voltage-gated 80.4 2 6.9E-05 25.6 3.5 23 47-69 14-36 (49)
15 1jy2_P Fibrinogen gamma-B chai 77.6 3.6 0.00012 24.5 3.9 23 37-59 25-47 (48)
16 2lw1_A ABC transporter ATP-bin 77.2 4.1 0.00014 25.4 4.4 27 50-76 22-48 (89)
17 1lwu_B Fibrinogen beta chain; 75.9 4.6 0.00016 31.1 5.2 51 24-75 8-60 (323)
18 1pyi_A Protein (pyrimidine pat 75.9 2.2 7.4E-05 25.9 2.7 26 50-75 48-73 (96)
19 1q06_A Transcriptional regulat 75.7 13 0.00046 24.2 6.8 47 32-78 58-114 (135)
20 3gpv_A Transcriptional regulat 75.6 6.8 0.00023 26.1 5.4 23 51-73 103-125 (148)
21 3gp4_A Transcriptional regulat 75.4 9.1 0.00031 25.5 6.0 23 51-73 89-111 (142)
22 2pnv_A Small conductance calci 75.0 4.2 0.00014 23.4 3.7 18 49-66 22-39 (43)
23 2er8_A Regulatory protein Leu3 74.8 2.8 9.5E-05 24.3 2.9 23 56-78 48-70 (72)
24 1m1j_C Fibrinogen gamma chain; 74.8 5.8 0.0002 31.5 5.6 39 37-75 25-63 (409)
25 3pp5_A BRK1, protein brick1; t 74.7 14 0.00046 23.4 6.7 18 50-67 52-69 (73)
26 2raw_B Borealin; cell cycle, d 73.3 4.7 0.00016 25.3 3.9 32 36-67 2-33 (68)
27 3swf_A CGMP-gated cation chann 73.2 2.8 9.7E-05 26.8 2.8 20 55-74 5-24 (74)
28 1m1j_C Fibrinogen gamma chain; 73.1 6.8 0.00023 31.2 5.6 64 12-75 59-137 (409)
29 1r8d_A Transcription activator 72.7 14 0.00046 23.1 6.0 43 33-75 61-107 (109)
30 3ghg_C Fibrinogen gamma chain; 71.5 7.7 0.00026 31.1 5.6 39 36-74 24-62 (411)
31 1rtm_1 Mannose-binding protein 70.5 5.8 0.0002 25.2 4.0 24 49-72 3-26 (149)
32 1buu_A Protein (mannose-bindin 70.3 4.6 0.00016 26.5 3.5 26 46-71 19-44 (168)
33 3ghg_B Fibrinogen beta chain; 69.7 7.6 0.00026 31.8 5.3 35 37-71 82-116 (461)
34 2oqq_A Transcription factor HY 69.2 6.7 0.00023 22.7 3.6 12 52-63 19-30 (42)
35 2wg5_A General control protein 67.5 2.1 7.3E-05 27.9 1.4 35 50-84 7-41 (109)
36 3n5l_A Binding protein compone 66.7 7 0.00024 28.0 4.1 27 49-75 281-307 (310)
37 2y7c_A Type-1 restriction enzy 65.9 17 0.00057 26.2 6.0 32 35-66 166-197 (464)
38 2jd6_0 Ferritin homolog, ferri 65.5 26 0.00087 22.9 6.7 49 36-84 115-170 (174)
39 3u0c_A Invasin IPAB, 62 kDa an 65.1 39 0.0013 25.0 9.0 59 22-81 90-149 (201)
40 3ci9_A Heat shock factor-bindi 64.7 17 0.00059 21.1 4.8 18 49-66 30-47 (48)
41 3t98_B Nucleoporin NUP58/NUP45 64.6 5.1 0.00017 26.0 2.7 26 52-77 14-39 (93)
42 1hwt_C Protein (heme activator 64.6 4.3 0.00015 23.8 2.2 22 57-78 58-79 (81)
43 3p7i_A PHND, subunit of alkylp 64.5 6.8 0.00023 28.5 3.7 27 49-75 290-316 (321)
44 1pyi_A Protein (pyrimidine pat 63.4 8.3 0.00028 23.2 3.5 26 57-82 48-73 (96)
45 3cve_A Homer protein homolog 1 63.2 13 0.00046 23.3 4.4 29 47-75 4-32 (72)
46 1g6u_A Domain swapped dimer; d 62.1 13 0.00044 21.8 3.9 25 50-74 20-44 (48)
47 3viq_B Mating-type switching p 61.6 14 0.00047 23.9 4.4 29 46-74 4-32 (85)
48 2zhg_A Redox-sensitive transcr 61.4 18 0.00061 24.3 5.2 29 48-76 95-123 (154)
49 1ic2_A Tropomyosin alpha chain 60.4 14 0.00047 22.7 4.1 30 47-76 38-67 (81)
50 1r8e_A Multidrug-efflux transp 59.7 26 0.00088 24.3 5.9 25 48-72 84-108 (278)
51 1nkp_B MAX protein, MYC proto- 59.4 27 0.00091 21.1 6.6 29 50-78 54-82 (83)
52 2zvf_A Alanyl-tRNA synthetase; 59.1 9 0.00031 25.3 3.3 50 25-74 7-56 (171)
53 1gk7_A Vimentin; intermediate 58.6 18 0.00063 20.0 4.0 25 50-74 13-37 (39)
54 3gpv_A Transcriptional regulat 58.5 37 0.0013 22.4 6.6 36 40-75 99-134 (148)
55 1m1j_B Fibrinogen beta chain; 58.1 15 0.00051 29.8 5.0 28 37-64 87-114 (464)
56 3ezh_A Nitrate/nitrite sensor 57.6 15 0.00052 23.8 4.1 40 16-55 64-115 (125)
57 1rtm_1 Mannose-binding protein 57.1 9.7 0.00033 24.1 3.1 24 55-78 2-25 (149)
58 1pwb_A SP-D, PSP-D, pulmonary 56.1 17 0.00059 23.7 4.3 25 47-71 28-52 (177)
59 3lt7_A Adhesin YADA; adhesion, 56.1 25 0.00087 21.8 4.7 35 46-83 30-64 (64)
60 3fx7_A Putative uncharacterize 54.8 42 0.0014 22.0 6.0 48 20-70 41-88 (94)
61 2vz4_A Tipal, HTH-type transcr 54.6 20 0.00068 22.3 4.2 42 33-74 60-105 (108)
62 3u1c_A Tropomyosin alpha-1 cha 54.2 16 0.00054 23.4 3.8 25 50-74 44-68 (101)
63 4e29_A Chimeric WZZB chain len 54.0 55 0.0019 24.3 7.1 41 24-66 104-144 (248)
64 3gp4_A Transcriptional regulat 53.7 45 0.0015 22.0 6.7 41 33-73 61-104 (142)
65 2zqm_A Prefoldin beta subunit 53.6 25 0.00087 21.7 4.6 31 46-76 80-110 (117)
66 1go4_E MAD1 (mitotic arrest de 53.5 30 0.001 22.8 5.1 29 47-75 16-44 (100)
67 3coq_A Regulatory protein GAL4 53.2 18 0.0006 21.2 3.6 19 51-69 46-64 (89)
68 3c3f_A Alpha/beta peptide with 53.0 13 0.00045 20.6 2.8 25 51-75 2-26 (34)
69 4aj5_A SKA1, spindle and kinet 51.7 48 0.0017 21.8 8.3 50 17-67 29-78 (91)
70 3p8c_D Wiskott-aldrich syndrom 51.4 36 0.0012 25.9 5.9 23 50-72 64-86 (279)
71 1jcd_A Major outer membrane li 50.7 14 0.00048 21.8 2.8 26 50-75 4-29 (52)
72 2zqm_A Prefoldin beta subunit 50.4 42 0.0014 20.7 6.2 25 49-73 76-100 (117)
73 2pjw_V Vacuolar protein sortin 50.4 18 0.00063 23.3 3.6 28 49-76 60-88 (91)
74 1q08_A Zn(II)-responsive regul 50.3 28 0.00095 20.8 4.3 43 33-75 18-64 (99)
75 1kd8_A GABH AIV, GCN4 acid bas 49.5 10 0.00036 21.3 2.0 24 51-74 2-25 (36)
76 3hh0_A Transcriptional regulat 49.4 7.1 0.00024 26.1 1.5 28 50-77 87-114 (146)
77 2zdi_C Prefoldin subunit alpha 49.2 23 0.00079 23.5 4.1 16 51-66 120-135 (151)
78 3tul_A Cell invasion protein S 49.1 22 0.00075 25.5 4.1 31 50-80 69-100 (158)
79 4dnd_A Syntaxin-10, SYN10; str 48.5 5.1 0.00018 27.1 0.7 30 54-83 71-100 (130)
80 3mq9_A Bone marrow stromal ant 48.4 83 0.0029 23.5 10.2 25 50-74 443-467 (471)
81 1kd8_B GABH BLL, GCN4 acid bas 47.9 18 0.0006 20.4 2.8 23 52-74 3-25 (36)
82 1buu_A Protein (mannose-bindin 47.8 11 0.00037 24.6 2.2 24 53-76 19-42 (168)
83 3okg_A Restriction endonucleas 45.1 59 0.002 23.1 5.9 29 35-67 178-206 (412)
84 3ghg_B Fibrinogen beta chain; 44.7 1.2E+02 0.0041 24.7 8.3 62 10-73 114-193 (461)
85 3b8m_A Ferric enterobactin (en 44.3 92 0.0032 22.9 8.0 38 24-63 138-175 (280)
86 1lrz_A FEMA, factor essential 43.9 31 0.0011 26.0 4.5 26 48-73 245-270 (426)
87 3kqg_A Langerin, C-type lectin 43.4 31 0.0011 22.2 3.9 23 51-73 17-39 (182)
88 3oj5_A Ferritin family protein 43.3 72 0.0025 21.3 5.9 41 36-76 120-167 (189)
89 2r2v_A GCN4 leucine zipper; co 43.2 23 0.0008 19.6 2.8 25 51-75 2-26 (34)
90 1l8d_A DNA double-strand break 43.2 57 0.0019 20.1 5.7 20 51-70 25-44 (112)
91 2y7c_A Type-1 restriction enzy 43.0 68 0.0023 23.0 6.0 33 35-67 379-411 (464)
92 2wq1_A General control protein 42.6 24 0.00083 19.4 2.8 23 52-74 2-24 (33)
93 2lw1_A ABC transporter ATP-bin 42.2 57 0.002 20.0 4.9 46 27-72 31-78 (89)
94 3cvf_A Homer-3, homer protein 42.2 21 0.00072 22.7 2.8 28 47-74 10-37 (79)
95 3c3g_A Alpha/beta peptide with 42.2 25 0.00085 19.4 2.8 24 52-75 2-25 (33)
96 3okg_A Restriction endonucleas 42.1 22 0.00075 25.3 3.2 15 35-49 369-383 (412)
97 1r8e_A Multidrug-efflux transp 42.0 82 0.0028 21.6 6.7 40 36-75 79-118 (278)
98 3m9b_A Proteasome-associated A 41.8 10 0.00034 28.8 1.5 36 49-84 67-102 (251)
99 2oqq_A Transcription factor HY 41.3 50 0.0017 19.0 4.9 23 49-71 9-31 (42)
100 2ke4_A CDC42-interacting prote 41.3 9.3 0.00032 24.8 1.1 46 32-77 39-89 (98)
101 1yf2_A Type I restriction-modi 41.2 59 0.002 22.9 5.3 14 35-48 172-185 (425)
102 1l8d_A DNA double-strand break 41.1 62 0.0021 20.0 6.3 26 49-74 77-102 (112)
103 2wlu_A DPS-like peroxide resis 40.9 81 0.0028 21.2 8.5 56 22-77 113-173 (175)
104 3err_A Fusion protein of micro 40.8 1E+02 0.0036 24.9 7.4 58 22-80 150-214 (536)
105 1lwu_C Fibrinogen gamma chain; 40.4 75 0.0026 24.4 6.2 26 49-74 32-57 (323)
106 3t98_B Nucleoporin NUP58/NUP45 39.7 65 0.0022 20.6 5.0 33 38-70 7-39 (93)
107 1fzc_C Fibrin; blood coagulati 39.2 37 0.0013 26.1 4.3 27 49-75 24-50 (319)
108 1k1f_A Breakpoint cluster regi 38.4 66 0.0023 20.4 4.7 30 46-75 36-65 (72)
109 3qao_A LMO0526 protein, MERR-l 38.4 66 0.0022 23.1 5.3 45 33-77 62-110 (249)
110 1avy_A Fibritin, gpwac M; bact 36.5 82 0.0028 20.0 5.3 31 49-80 21-51 (74)
111 2z5i_A TM, general control pro 36.5 35 0.0012 19.8 3.0 19 56-74 11-29 (52)
112 3b8o_A Lipopolysaccharide bios 36.3 1.2E+02 0.0041 21.9 7.7 38 24-63 123-160 (265)
113 3kyj_A CHEA3, putative histidi 36.3 37 0.0013 22.6 3.5 34 32-65 4-37 (144)
114 3iyn_Q Protein IX, PIX, hexon- 35.6 41 0.0014 23.7 3.7 26 50-75 105-130 (140)
115 1a93_B MAX protein, coiled coi 35.3 57 0.002 17.9 4.2 26 49-74 6-31 (34)
116 3m0a_A TNF receptor-associated 34.3 68 0.0023 18.5 8.2 35 39-73 22-56 (66)
117 2lch_A Protein OR38; structura 34.3 72 0.0025 19.6 4.5 27 38-64 5-31 (113)
118 2oxj_A Hybrid alpha/beta pepti 34.0 40 0.0014 18.7 2.8 24 51-74 2-25 (34)
119 2yy0_A C-MYC-binding protein; 33.8 70 0.0024 18.5 4.3 27 49-75 25-51 (53)
120 2lme_A Adhesin YADA; trimeric 33.4 57 0.002 20.8 3.9 21 49-69 15-35 (105)
121 2bni_A General control protein 33.4 38 0.0013 18.8 2.6 25 51-75 2-26 (34)
122 3m48_A General control protein 33.2 35 0.0012 18.8 2.4 23 52-74 2-24 (33)
123 1abz_A Alpha-T-alpha, ATA; de 33.2 44 0.0015 18.9 2.9 22 53-74 6-34 (40)
124 1uo4_A General control protein 33.0 38 0.0013 18.7 2.6 25 51-75 2-26 (34)
125 2dgc_A Protein (GCN4); basic d 32.5 76 0.0026 18.7 4.1 25 50-74 30-54 (63)
126 1u7l_A Vacuolar ATP synthase s 32.4 1.1E+02 0.0038 24.2 6.1 46 20-65 115-165 (392)
127 1ses_A Seryl-tRNA synthetase; 32.3 70 0.0024 24.8 4.9 34 48-81 69-106 (421)
128 3s4r_A Vimentin; alpha-helix, 32.0 66 0.0023 20.3 4.0 25 50-74 16-40 (93)
129 1m48_A Interleukin-2; four-hel 31.7 63 0.0022 22.5 4.1 32 23-54 82-131 (133)
130 3i00_A HIP-I, huntingtin-inter 31.4 1.2E+02 0.004 20.2 7.4 43 26-68 16-58 (120)
131 2xgw_A Peroxide resistance pro 31.3 1.3E+02 0.0046 20.9 8.5 57 22-78 129-190 (199)
132 1ca9_A TRAF2, protein (TNF rec 31.1 83 0.0029 21.0 4.6 24 49-72 16-39 (192)
133 4g1a_A AQ-C16C19 peptide; heli 31.1 19 0.00066 19.5 1.1 21 50-70 7-27 (32)
134 3sja_C Golgi to ER traffic pro 30.9 65 0.0022 19.8 3.7 27 50-76 32-58 (65)
135 1lwu_C Fibrinogen gamma chain; 30.8 1.8E+02 0.0062 22.3 7.9 20 47-66 37-56 (323)
136 2ve7_C Kinetochore protein NUF 30.2 53 0.0018 24.0 3.7 25 50-74 155-179 (250)
137 1yf2_A Type I restriction-modi 30.2 1.1E+02 0.0039 21.4 5.3 28 35-66 382-409 (425)
138 3gnl_A Uncharacterized protein 30.1 1.2E+02 0.004 21.9 5.6 43 22-64 185-233 (244)
139 3nmd_A CGMP dependent protein 29.9 1E+02 0.0036 19.2 5.3 22 52-73 42-63 (72)
140 2bk6_A Non-heme iron-containin 29.8 1.2E+02 0.004 19.8 8.4 56 22-77 94-154 (156)
141 1q06_A Transcriptional regulat 29.7 62 0.0021 20.9 3.7 31 37-67 80-110 (135)
142 1yac_A Ycacgp, YCAC gene produ 29.7 19 0.00065 24.8 1.2 29 3-32 157-186 (208)
143 3ghg_A Fibrinogen alpha chain; 29.7 88 0.003 26.4 5.3 52 24-75 70-128 (562)
144 3efg_A Protein SLYX homolog; x 29.6 68 0.0023 19.8 3.7 35 36-70 28-62 (78)
145 2c2j_A DNA-binding stress resp 29.4 1.5E+02 0.0052 21.0 7.8 60 22-81 132-195 (211)
146 3azd_A Short alpha-tropomyosin 29.2 27 0.00091 19.0 1.5 26 48-73 9-34 (37)
147 1ci6_A Transcription factor AT 28.9 91 0.0031 18.2 5.0 26 50-75 23-48 (63)
148 1dip_A Delta-sleep-inducing pe 28.9 68 0.0023 20.6 3.6 24 49-72 21-44 (78)
149 2l3l_A Tubulin-specific chaper 28.9 50 0.0017 21.6 3.1 41 25-65 58-106 (111)
150 1fxk_A Prefoldin; archaeal pro 28.8 1E+02 0.0034 18.6 6.7 25 49-73 78-102 (107)
151 2l5g_B Putative uncharacterize 28.6 62 0.0021 18.6 3.1 17 48-64 21-37 (42)
152 1ydx_A Type I restriction enzy 28.5 1.2E+02 0.0041 21.7 5.3 14 35-48 170-183 (406)
153 3fvb_A Bacterioferritin; niaid 28.5 1.3E+02 0.0044 19.9 5.6 42 36-77 136-179 (182)
154 1m1j_B Fibrinogen beta chain; 28.1 2.4E+02 0.0081 22.8 9.4 25 49-73 174-198 (464)
155 2gkw_A TNF receptor-associated 27.9 57 0.0019 22.1 3.4 21 51-71 15-35 (192)
156 3plt_A Sphingolipid long chain 27.6 62 0.0021 24.2 3.8 26 50-75 131-156 (234)
157 3rrk_A V-type ATPase 116 kDa s 27.5 60 0.002 23.6 3.6 25 50-74 226-250 (357)
158 2y9y_A Imitation switch protei 27.3 1.2E+02 0.0041 24.0 5.5 59 20-78 125-212 (374)
159 3hnw_A Uncharacterized protein 27.1 1.1E+02 0.0037 20.6 4.7 28 47-74 107-134 (138)
160 3hh0_A Transcriptional regulat 26.8 71 0.0024 21.1 3.6 43 33-75 63-105 (146)
161 3pmo_A UDP-3-O-[3-hydroxymyris 26.8 27 0.00091 26.3 1.6 23 50-72 343-365 (372)
162 1a92_A Delta antigen; leucine 26.7 1E+02 0.0036 18.2 4.1 25 47-71 11-35 (50)
163 3gvy_A Bacterioferritin; iron 26.5 1.1E+02 0.0037 19.3 4.4 42 36-77 115-158 (161)
164 2ld6_A Chemotaxis protein CHEA 26.5 1.1E+02 0.0037 19.7 4.5 26 39-64 4-29 (139)
165 1tqg_A Chemotaxis protein CHEA 26.5 1.1E+02 0.0037 18.3 4.8 27 38-64 4-30 (105)
166 1fxk_C Protein (prefoldin); ar 26.1 1.3E+02 0.0044 19.1 6.4 34 38-71 90-123 (133)
167 2wuj_A Septum site-determining 25.9 1E+02 0.0034 17.7 4.0 22 51-72 35-56 (57)
168 2yru_A Steroid receptor RNA ac 25.8 43 0.0015 22.2 2.4 42 22-66 10-52 (118)
169 1fzc_B Fibrin; blood coagulati 25.7 81 0.0028 24.1 4.2 25 50-74 37-61 (328)
170 3iyn_Q Protein IX, PIX, hexon- 25.7 92 0.0031 21.9 4.1 30 46-75 94-123 (140)
171 2gkw_A TNF receptor-associated 25.5 93 0.0032 21.0 4.1 26 49-74 6-31 (192)
172 2cf7_A DPR; peroxide resistanc 25.3 1.5E+02 0.0052 19.6 8.5 56 22-77 103-163 (165)
173 1jek_A ENV polyprotein; envelo 25.3 41 0.0014 19.2 1.9 17 60-76 23-39 (42)
174 3tul_A Cell invasion protein S 24.8 58 0.002 23.3 3.0 29 40-69 67-95 (158)
175 3t97_C Nuclear pore glycoprote 24.8 1.1E+02 0.0038 18.4 3.9 25 49-73 25-49 (64)
176 3p8q_A GP5, head protein; viru 24.7 16 0.00053 27.6 0.0 35 43-77 34-68 (385)
177 1ydx_A Type I restriction enzy 24.6 1.6E+02 0.0054 21.1 5.3 27 35-65 358-384 (406)
178 2c41_A DPS family DNA-binding 24.2 1.5E+02 0.005 19.0 8.4 59 21-79 93-156 (158)
179 1sy9_B Cyclic-nucleotide-gated 24.1 23 0.00079 18.5 0.6 9 18-26 17-25 (26)
180 3uv4_A Second bromodomain of h 24.1 1.7E+02 0.0057 19.7 6.8 29 41-69 116-144 (158)
181 2hy6_A General control protein 23.9 70 0.0024 17.7 2.6 24 51-74 2-25 (34)
182 4ghu_A TNF receptor-associated 23.6 1.2E+02 0.0041 20.8 4.4 15 57-71 21-35 (198)
183 3e7k_A TRPM7 channel; coiled-c 23.2 1.3E+02 0.0044 18.1 6.1 28 47-74 13-40 (56)
184 3kin_B Kinesin heavy chain; mo 23.0 1.2E+02 0.0041 19.7 4.1 26 49-74 88-113 (117)
185 3pbf_A Pulmonary surfactant-as 22.4 88 0.003 19.3 3.2 20 54-73 6-25 (148)
186 4etp_A Kinesin-like protein KA 22.4 58 0.002 25.2 2.8 8 59-66 26-33 (403)
187 3lss_A Seryl-tRNA synthetase; 22.4 2.3E+02 0.0078 22.8 6.4 30 52-81 113-146 (484)
188 3mov_A Lamin-B1; LMNB1, B-type 22.4 17 0.00058 23.4 -0.2 23 49-71 36-58 (95)
189 2p4v_A Transcription elongatio 22.2 60 0.002 22.0 2.6 19 49-67 52-70 (158)
190 1dh3_A Transcription factor CR 21.8 1.2E+02 0.0042 17.3 4.8 23 52-74 24-46 (55)
191 1zww_A SH3-containing GRB2-lik 21.6 2.1E+02 0.0074 20.0 7.5 44 38-81 209-252 (256)
192 3viq_A SWI5-dependent recombin 21.6 1.6E+02 0.0055 19.6 4.6 25 49-73 6-30 (122)
193 2p64_A F-BOX/WD repeat protein 21.5 28 0.00096 20.7 0.7 22 18-39 16-37 (52)
194 4etp_A Kinesin-like protein KA 21.4 1.1E+02 0.0036 23.7 4.1 26 48-73 29-54 (403)
195 1ik9_A DNA repair protein XRCC 21.4 2.3E+02 0.0079 20.3 6.7 36 35-70 124-159 (213)
196 2c2u_A DPS, DNA-binding stress 21.3 2.2E+02 0.0074 20.0 8.2 57 21-77 144-205 (207)
197 2i0m_A Phosphate transport sys 21.2 1.8E+02 0.0063 19.1 5.7 44 25-68 18-61 (216)
198 2zdi_C Prefoldin subunit alpha 21.2 1.8E+02 0.0062 19.0 5.9 39 36-74 98-136 (151)
199 3sjb_C Golgi to ER traffic pro 20.8 1.1E+02 0.0038 20.0 3.5 26 50-75 49-74 (93)
200 3q0x_A Centriole protein; cent 20.7 1E+02 0.0034 22.8 3.7 25 49-73 177-201 (228)
201 2yw6_A DNA protection during s 20.4 2.1E+02 0.0071 19.4 6.0 57 22-78 101-161 (183)
202 4id0_A Glutathione S-transfera 20.4 1.4E+02 0.0048 18.9 4.0 20 56-75 131-150 (214)
203 1hx1_B BAG-1, BAG-family molec 20.3 1.5E+02 0.0052 20.0 4.3 30 34-64 10-39 (114)
204 3swf_A CGMP-gated cation chann 20.3 1.7E+02 0.0058 18.4 8.5 48 26-77 8-60 (74)
205 3pjs_K KCSA, voltage-gated pot 20.3 76 0.0026 21.0 2.8 17 50-66 145-161 (166)
206 4dci_A Uncharacterized protein 20.2 1.6E+02 0.0055 20.4 4.5 30 50-79 36-65 (150)
207 2fjc_A Antigen TPF1; mini ferr 20.1 1.9E+02 0.0065 18.8 8.5 55 21-75 97-156 (156)
No 1
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=100.00 E-value=4.4e-36 Score=195.10 Aligned_cols=72 Identities=39% Similarity=0.686 Sum_probs=62.9
Q ss_pred CcchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 034753 7 ITNAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGTASA 78 (85)
Q Consensus 7 ~~~~~~v~~~iq~DW~nRE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s~~~ 78 (85)
--+|.+|+++||+||+|||||+.|++||+||++|||+|+++||+||+.||+||+.||++|+||||+|+|++.
T Consensus 2 ~~~s~~~~~~iq~DW~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAklsSI~~ 73 (73)
T 3pp5_A 2 PLGSMSTKTNIQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKTVQE 73 (73)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 346889999999999999999999999999999999999999999999999999999999999999999873
No 2
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=6.7e-35 Score=190.34 Aligned_cols=69 Identities=38% Similarity=0.679 Sum_probs=61.9
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 9 NAVNVGIAVQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 9 ~~~~v~~~iq~DW~nRE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
.+..|+++||+||+|||||++|+++|++|++|||+|+++||+||++||+||+.||++|+||||+|+|..
T Consensus 4 ~~~~~q~~iq~DW~nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAklss~~ 72 (75)
T 3p8c_E 4 QEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTKGE 72 (75)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 567899999999999999999999999999999999999999999999999999999999999999954
No 3
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=95.40 E-value=0.023 Score=31.25 Aligned_cols=24 Identities=46% Similarity=0.580 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 48 TKSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 48 cr~KLa~lneKL~~LEr~le~LEA 71 (85)
-+.|-+.|+.|||.||.+|+-||-
T Consensus 6 lekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467889999999999999999984
No 4
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=94.77 E-value=0.094 Score=31.22 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 40 FLVQFEATTKSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 40 FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v 73 (85)
=|-.|..+..++|..|++||..+-++|+-||.++
T Consensus 13 slv~FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 13 SIVKFQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567899999999999999999999999999886
No 5
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=90.11 E-value=0.54 Score=27.22 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 51 KLALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
|=..|++|+..||.+|+-|.+.+.+-|
T Consensus 17 r~e~LE~Ri~~LE~KLd~L~~~l~aLp 43 (43)
T 2pnv_A 17 RSEDFEKRIVTLETKLETLIGSIHALP 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 335677777777777777777766543
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=89.71 E-value=0.56 Score=27.03 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
..+..|++++..||+.|..|++.++.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34788999999999999999988764
No 7
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=87.38 E-value=1.2 Score=24.56 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 46 ATTKSKLALLNEKLDTLERRLELL 69 (85)
Q Consensus 46 ~scr~KLa~lneKL~~LEr~le~L 69 (85)
.|-=+||-+++++++.+|++|+.|
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~KLd~l 29 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHKLDLL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888765
No 8
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=86.32 E-value=3.8 Score=24.81 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEVQVGTASAN 79 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA~v~s~~~~ 79 (85)
.-+.+++.+++++..|++.+..|+..+......
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566777777777777777788777766553
No 9
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=86.11 E-value=0.7 Score=27.10 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 034753 54 LLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 54 ~lneKL~~LEr~le~LEA~v~s 75 (85)
++++|+..||..|+.|-.+++.
T Consensus 2 dlEekv~~Le~~ld~LqTr~Ar 23 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFAR 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999988875
No 10
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=85.25 E-value=0.49 Score=27.60 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034753 50 SKLALLNEKLDTLERRLELLE 70 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LE 70 (85)
.+++.|++++..||..|..|+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555554443
No 11
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=83.58 E-value=5.4 Score=25.45 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHhhc
Q 034753 35 RRLFEFLVQFEATTK---SKLAL-LNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr---~KLa~-lneKL~~LEr~le~LEA~v~ 74 (85)
+..++|+|.|=.+.- .+++. -+.||-.|+.+|..||+++.
T Consensus 19 Re~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~ 62 (75)
T 3p8c_E 19 REYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIE 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766655 34433 56788888888888888774
No 12
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=82.44 E-value=5.3 Score=24.52 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATTKSKLALLNEKLDTLERRLE 67 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le 67 (85)
.++..||..||.-.+.+.-.|....+.+=..++
T Consensus 5 ~KLasFLkDFD~ev~~~~~~~~~~~~~llk~i~ 37 (62)
T 2qfa_B 5 RKLASFLKDFDREVEIRIKQIESDRQNLLKEVD 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999988776655444
No 13
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=81.71 E-value=2 Score=23.61 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034753 49 KSKLALLNEKLDTLERRLELL 69 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~L 69 (85)
=+||-++++|++...++|+.|
T Consensus 9 GaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 9 GARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 368889999999999888754
No 14
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=80.40 E-value=2 Score=25.57 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034753 47 TTKSKLALLNEKLDTLERRLELL 69 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~L 69 (85)
|-=+||.+++++++.+|++|+.|
T Consensus 14 S~~~Rl~rVE~qV~~md~KLd~l 36 (49)
T 3bj4_A 14 TIGARLNRVEDKVTQLDQRLALI 36 (49)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999866
No 15
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=77.56 E-value=3.6 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034753 37 LFEFLVQFEATTKSKLALLNEKL 59 (85)
Q Consensus 37 i~~FLN~Fd~scr~KLa~lneKL 59 (85)
|++||+++..+.-+.|..|++-|
T Consensus 25 iadfL~~Yq~~vd~dL~~lE~~L 47 (48)
T 1jy2_P 25 IADFLNNYQTSVDKDLRTLEGIL 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccchhhHHHHHHHHh
Confidence 78999999988777776666543
No 16
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=77.19 E-value=4.1 Score=25.37 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGTA 76 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s~ 76 (85)
..|..|..+|..||.++.-|+++++..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 357888999999999999999998764
No 17
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=75.94 E-value=4.6 Score=31.06 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 24 REFISHISLNVRRLFE--FLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 24 RE~ie~Is~~I~~i~~--FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
|+.+|.+...|+.+++ +-.+.. .-+.++..|++|++.||.++..+......
T Consensus 8 ~~~le~~~~~ik~~~~~~~~~~I~-~Lq~~le~L~~KI~~LE~~v~~q~~~~~~ 60 (323)
T 1lwu_B 8 QKEIENRYKEVKIRIESTVAGSLR-SMKSVLEHLRAKMQRMEEAIKTQKELCSA 60 (323)
T ss_dssp HHHHHHHTHHHHHHHHTTTHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666666666666643 222221 23456788888888888888877776543
No 18
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=75.89 E-value=2.2 Score=25.91 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
..+..|++||..||..|.-+......
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~~~~~ 73 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGVDPTK 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 45667777777777777766654444
No 19
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=75.75 E-value=13 Score=24.22 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 034753 32 LNVRRLFEFLVQF----------EATTKSKLALLNEKLDTLERRLELLEVQVGTASA 78 (85)
Q Consensus 32 ~~I~~i~~FLN~F----------d~scr~KLa~lneKL~~LEr~le~LEA~v~s~~~ 78 (85)
.++..|.++|... ...-+.++..+++++..|++.++.|+..+...++
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 114 (135)
T 1q06_A 58 FNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACPG 114 (135)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666666543 2334567777888888888888888888776654
No 20
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=75.56 E-value=6.8 Score=26.11 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 034753 51 KLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v 73 (85)
+++.+++++..|++.++.|+.++
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 21
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=75.38 E-value=9.1 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 034753 51 KLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v 73 (85)
+++.+.+++..|++.++.|+.++
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 22
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=75.01 E-value=4.2 Score=23.36 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034753 49 KSKLALLNEKLDTLERRL 66 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~l 66 (85)
+.|+..|+.||..|.+++
T Consensus 22 E~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 22 EKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544444
No 23
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=74.81 E-value=2.8 Score=24.26 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC
Q 034753 56 NEKLDTLERRLELLEVQVGTASA 78 (85)
Q Consensus 56 neKL~~LEr~le~LEA~v~s~~~ 78 (85)
..++..||.+++.||..|....+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999987654
No 24
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.79 E-value=5.8 Score=31.54 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 37 LFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 37 i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
|.+||++++..-.+.|..|+.-|+.|+..-+..+.-|.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~ 63 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQH 63 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999988877765543
No 25
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=74.67 E-value=14 Score=23.44 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034753 50 SKLALLNEKLDTLERRLE 67 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le 67 (85)
.||..++.+|..||+++.
T Consensus 52 ~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 52 EKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456666666666666553
No 26
>2raw_B Borealin; cell cycle, dasrab, chromosomal passender complex, IAP, BIR, apoptosis, cell division, centromere, chromosomal protein, binding, mitosis; 2.40A {Homo sapiens} PDB: 2rax_B
Probab=73.32 E-value=4.7 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.408 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLERRLE 67 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le 67 (85)
++..||..||.-.+.+.-.|....+.+=..++
T Consensus 2 KLasFLkDFD~eV~~~~~~lr~~~~~llk~i~ 33 (68)
T 2raw_B 2 KLASFLKDFDREVEIRIKQIESDRQNLLKEVD 33 (68)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999987766655443
No 27
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=73.18 E-value=2.8 Score=26.76 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 034753 55 LNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 55 lneKL~~LEr~le~LEA~v~ 74 (85)
+++|+.+||..|+.|-.+++
T Consensus 5 lEEKv~~LE~sld~LQTrfA 24 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFA 24 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 28
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.08 E-value=6.8 Score=31.15 Aligned_cols=64 Identities=13% Similarity=0.284 Sum_probs=36.6
Q ss_pred HHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 12 NVGIAVQADWENR-----EFISHISLNVRRLFEFLVQFEATT----------KSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 12 ~v~~~iq~DW~nR-----E~ie~Is~~I~~i~~FLN~Fd~sc----------r~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.....||.-|..+ +-++.++...+++.+=+.+++... +..|..++.||+.|+.++..|++++..
T Consensus 59 ~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 59 YLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 4455666666654 445666777777777777766522 233334455555565566566655543
No 29
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=72.70 E-value=14 Score=23.06 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 33 NVRRLFEFLVQ----FEATTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 33 ~I~~i~~FLN~----Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
++..|..+|.. ....-+.+++.+++++..|++.+..|+..+..
T Consensus 61 ~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 107 (109)
T 1r8d_A 61 RLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS 107 (109)
T ss_dssp CHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666642 23455677788888888888888888877754
No 30
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=71.52 E-value=7.7 Score=31.12 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
-|.+||++.+..-+..|..|+..|+.|+++=...+..|.
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~ 62 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIK 62 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 378999999999999999999999999887654444443
No 31
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=70.54 E-value=5.8 Score=25.17 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQ 72 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~ 72 (85)
+.||..|+.+++.|+++|..|...
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888888888877764
No 32
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=70.31 E-value=4.6 Score=26.50 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 46 ATTKSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 46 ~scr~KLa~lneKL~~LEr~le~LEA 71 (85)
.+|..+|..|+.+|+.|+.+|..|+.
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888888999999988888876
No 33
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=69.73 E-value=7.6 Score=31.78 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 37 LFEFLVQFEATTKSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 37 i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA 71 (85)
|.+||++++.+-+..|..|+..|+.|+.+=.-.+.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 78999999999999999999999999877554333
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.17 E-value=6.7 Score=22.75 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 034753 52 LALLNEKLDTLE 63 (85)
Q Consensus 52 La~lneKL~~LE 63 (85)
.+.|++|++.|+
T Consensus 19 naeLEervstLq 30 (42)
T 2oqq_A 19 NSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 35
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=67.51 E-value=2.1 Score=27.89 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGTASANPHLFT 84 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s~~~~p~~~~ 84 (85)
-|+.+|...+..|.++++.++.++....++|+.+.
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg 41 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARLRSPPLLVG 41 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 46778899999999999999999999999887653
No 36
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=66.73 E-value=7 Score=28.04 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
..||+.++.+|..|++++.-|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (310)
T 3n5l_A 281 AAKLKALDEELAKLEKRMAEREQKTAA 307 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 469999999999999999999988764
No 37
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=65.91 E-value=17 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.103 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATTKSKLALLNEKLDTLERRL 66 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~l 66 (85)
++|+++|..|+..|..-.+.++++++.|+...
T Consensus 166 ~~Iv~~Ld~~~~~id~~~~~~~~~~~~l~~~k 197 (464)
T 2y7c_A 166 KIIAEKLDTLLAQVDSTKARFEQIPQILKRFR 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999998877776666666666665533
No 38
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Probab=65.49 E-value=26 Score=22.94 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhcc-cCCCCCCcc
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLER------RLELLEVQVGT-ASANPHLFT 84 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr------~le~LEA~v~s-~~~~p~~~~ 84 (85)
.+++||..|-..-......+..-|+.|++ .+=.++..+++ .+.-|+++.
T Consensus 115 ~t~~~l~~~l~eq~e~~~~l~~~l~~l~~~g~~~~g~~~~d~~l~~~~~~~~~~~~ 170 (174)
T 2jd6_0 115 STRAFLEWFINEQVEEEASVKKILDKLKFAKDSPQILFMLDKELSARAPKLPGLLM 170 (174)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTTCCCSSCC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchhhhhHHHhhcCCCCCchhc
Confidence 47889999888877778888888888876 24456666766 667788764
No 39
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=65.09 E-value=39 Score=24.96 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCC
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGT-ASANPH 81 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s-~~~~p~ 81 (85)
.+|||-..++......-. +++--..+-.++.....+.+.+|.+++.++++|+. .|+.|.
T Consensus 90 ks~EFSD~~qTaL~eAQ~-AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~dP~ 149 (201)
T 3u0c_A 90 KNLEFSDKINTLLSETEG-LTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPE 149 (201)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 467776666655544333 23333345667777888888899999999999887 566664
No 40
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=64.74 E-value=17 Score=21.15 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034753 49 KSKLALLNEKLDTLERRL 66 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~l 66 (85)
-+|+..|..|+..||+++
T Consensus 30 ~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 30 IGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhHHHHHHhhc
Confidence 457777888888887765
No 41
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=64.58 E-value=5.1 Score=26.01 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 52 LALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 52 La~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
..+++++|+....+++.||..|.+.+
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556666666666666666666643
No 42
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=64.57 E-value=4.3 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCC
Q 034753 57 EKLDTLERRLELLEVQVGTASA 78 (85)
Q Consensus 57 eKL~~LEr~le~LEA~v~s~~~ 78 (85)
..+..||.+|..||..|..+.+
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~~ 79 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVHS 79 (81)
T ss_dssp HHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 5567777777777777766543
No 43
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=64.51 E-value=6.8 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
..||+.++.+|..|++++.-|++..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (321)
T 3p7i_A 290 LAKTTAIQAQLDDLDRLNNALSAMSSV 316 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 469999999999999999999998764
No 44
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=63.43 E-value=8.3 Score=23.19 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCC
Q 034753 57 EKLDTLERRLELLEVQVGTASANPHL 82 (85)
Q Consensus 57 eKL~~LEr~le~LEA~v~s~~~~p~~ 82 (85)
..+..||.+|..||..|......|..
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~~~~~ 73 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGVDPTK 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 46778899999999988887665543
No 45
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=63.15 E-value=13 Score=23.28 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
+|-.||..++.+=+.||.++.-||.++..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56778888888888888888888777653
No 46
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=62.14 E-value=13 Score=21.82 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
..|+.|+..||.||.++--|-.++.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888887777664
No 47
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=61.63 E-value=14 Score=23.94 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 46 ATTKSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 46 ~scr~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
++-+.+++.|.++...|++++.-++++++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35578999999999999999999999886
No 48
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=61.39 E-value=18 Score=24.28 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034753 48 TKSKLALLNEKLDTLERRLELLEVQVGTA 76 (85)
Q Consensus 48 cr~KLa~lneKL~~LEr~le~LEA~v~s~ 76 (85)
-+.++..+++++..|++.++.|+..+...
T Consensus 95 l~~~~~~l~~qi~~L~~~~~~L~~~~~~~ 123 (154)
T 2zhg_A 95 SSQWREELDRRIHTLVALRDELDGCIGCG 123 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677888888888888888898888743
No 49
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.37 E-value=14 Score=22.66 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEVQVGTA 76 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA~v~s~ 76 (85)
....-+..|+.|++.||..++-.|.++..+
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888888887777766543
No 50
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=59.71 E-value=26 Score=24.26 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 034753 48 TKSKLALLNEKLDTLERRLELLEVQ 72 (85)
Q Consensus 48 cr~KLa~lneKL~~LEr~le~LEA~ 72 (85)
-+.|++.+++++..|.+.+..|+..
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (278)
T 1r8e_A 84 YTEQERQIREKLDFLSALEQTISLV 108 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 51
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=59.39 E-value=27 Score=21.11 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGTASA 78 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s~~~ 78 (85)
.+...|.+.+..|.++.+.|++++...++
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566778888888888888888876554
No 52
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=59.06 E-value=9 Score=25.34 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 25 EFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 25 E~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
+|......-+..+++-|..=...-..|+..|.+++..||++++-|..+++
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555421124457777888888888888877766544
No 53
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=58.58 E-value=18 Score=19.98 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
.|||..=+|...||++=..||+++.
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888899998888888875
No 54
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=58.54 E-value=37 Score=22.45 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 40 FLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 40 FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.|..--..-+.+++.|.+.++.|+..++++|..+..
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334444555555555555555555555554443
No 55
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=58.05 E-value=15 Score=29.82 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 37 LFEFLVQFEATTKSKLALLNEKLDTLER 64 (85)
Q Consensus 37 i~~FLN~Fd~scr~KLa~lneKL~~LEr 64 (85)
+.+||++...+-++.|..|+.+|+.|++
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 3667777777777777777777777764
No 56
>3ezh_A Nitrate/nitrite sensor protein NARX; histidine kinase, sensor domain, four-helix bundle, nitrate sensor, selenomethionyl MAD; HET: MSE; 1.70A {Escherichia coli K12} PDB: 3ezi_A
Probab=57.59 E-value=15 Score=23.84 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=30.6
Q ss_pred HHHhhhhH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 16 AVQADWEN-----------R-EFISHISLNVRRLFEFLVQFEATTKSKLALL 55 (85)
Q Consensus 16 ~iq~DW~n-----------R-E~ie~Is~~I~~i~~FLN~Fd~scr~KLa~l 55 (85)
.|++.|.+ + .|...+..+|..|=.|+..++..++.|+..+
T Consensus 64 ~l~~~W~~~l~p~l~~~~~~~~~~~~v~~FV~~ID~lV~~LE~~sE~kl~~~ 115 (125)
T 3ezh_A 64 GLQDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETA 115 (125)
T ss_dssp HHHHHHHHTHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788863 1 1667778888888889999999888888643
No 57
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=57.07 E-value=9.7 Score=24.10 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC
Q 034753 55 LNEKLDTLERRLELLEVQVGTASA 78 (85)
Q Consensus 55 lneKL~~LEr~le~LEA~v~s~~~ 78 (85)
|.+||+.||.++..|+.++.....
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999988876543
No 58
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=56.11 E-value=17 Score=23.71 Aligned_cols=25 Identities=8% Similarity=0.236 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA 71 (85)
.++.+|..|+.+|+.|+.+|..|+.
T Consensus 28 ~~~~~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 28 SLRQQVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566688899999999999888876
No 59
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=56.07 E-value=25 Score=21.76 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCc
Q 034753 46 ATTKSKLALLNEKLDTLERRLELLEVQVGTASANPHLF 83 (85)
Q Consensus 46 ~scr~KLa~lneKL~~LEr~le~LEA~v~s~~~~p~~~ 83 (85)
.-+-.|+.+|+.||.++|.++ .|-++++..--+||
T Consensus 30 ~YTD~KF~qL~nKi~k~~kr~---~aGiA~a~A~asl~ 64 (64)
T 3lt7_A 30 QYTDHKFHQLENRLDKLEKRL---LKLLASSAALNSLF 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHC----------
T ss_pred HhhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHhcC
Confidence 445678999999999999875 56777776666665
No 60
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=54.77 E-value=42 Score=21.97 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 20 DWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLE 70 (85)
Q Consensus 20 DW~nRE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LE 70 (85)
.|...++..+- .........|++|+..|-.-..=|.+||.-||. +|||
T Consensus 41 sWqDqkr~kFe-e~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~--~~~~ 88 (94)
T 3fx7_A 41 SWRDARRDKFS-EVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE--DYLE 88 (94)
T ss_dssp SCCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHC
T ss_pred hHhhHHHHHHH-HHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH--HHHH
Confidence 46666655443 345677788999999999999999999999986 4555
No 61
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=54.58 E-value=20 Score=22.31 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 33 NVRRLFEFLVQ----FEATTKSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 33 ~I~~i~~FLN~----Fd~scr~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
++..|.++|.. ....-+.+++.+++++..|++.++.|+..+.
T Consensus 60 sl~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 105 (108)
T 2vz4_A 60 PLDEVAALLDDPAADPRAHLRRQHELLSARIGKLQKMAAAVEQAME 105 (108)
T ss_dssp CHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555532 2234566777777777777777777777664
No 62
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=54.16 E-value=16 Score=23.39 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
.-++.|+.|++.||..|+.++.++.
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666665555555544
No 63
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=53.97 E-value=55 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 24 REFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRL 66 (85)
Q Consensus 24 RE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~l 66 (85)
++||.+|+..+.+ +.++.|...-..|+..|+++|+..|..+
T Consensus 104 ~~YI~fv~~~v~~--el~~~l~~~i~~r~~~l~~ql~~~~~~a 144 (248)
T 4e29_A 104 AQYIQQVDDKVNQ--ELERDLKDNIALGRKNLQDSLRTQEVVA 144 (248)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888776654 3446666666667777766665555443
No 64
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=53.66 E-value=45 Score=21.97 Aligned_cols=41 Identities=20% Similarity=0.471 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 33 NVRRLFEFLVQFE---ATTKSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 33 ~I~~i~~FLN~Fd---~scr~KLa~lneKL~~LEr~le~LEA~v 73 (85)
++..|-++|...+ .+|..+...|.+++..|++++..|+...
T Consensus 61 sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~ 104 (142)
T 3gp4_A 61 SIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEAL 104 (142)
T ss_dssp CHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 2445555555555555555555555443
No 65
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.65 E-value=25 Score=21.71 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034753 46 ATTKSKLALLNEKLDTLERRLELLEVQVGTA 76 (85)
Q Consensus 46 ~scr~KLa~lneKL~~LEr~le~LEA~v~s~ 76 (85)
..+..++..|+.++..++.+++-|+..+...
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777777776666543
No 66
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.51 E-value=30 Score=22.84 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
+-+.|+.+|+.--+.|.+..+.||.++..
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999899999999999999977
No 67
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=53.19 E-value=18 Score=21.24 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034753 51 KLALLNEKLDTLERRLELL 69 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~L 69 (85)
.+..|++||..||..|..|
T Consensus 46 ~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 46 HLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655543
No 68
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=52.99 E-value=13 Score=20.64 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 51 KLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
|+.+|++|+..|=..-..||+.|..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4556666666666666677776654
No 69
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=51.74 E-value=48 Score=21.78 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=41.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 17 VQADWENREFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLE 67 (85)
Q Consensus 17 iq~DW~nRE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le 67 (85)
+-+|=..|-+..-|-.-|.-+-+.||+|+ .|-.+=.+++..|..|+.+++
T Consensus 29 ~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E-~eV~~Qe~~~~sLKEL~~s~e 78 (91)
T 4aj5_A 29 CGQEPTLKTVLNKIGDEIIVINELLNKLE-LEIQYQEQTNNSLKELCESLE 78 (91)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44677778888888888999999999999 688888888889998888775
No 70
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=51.39 E-value=36 Score=25.95 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 034753 50 SKLALLNEKLDTLERRLELLEVQ 72 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~ 72 (85)
.|+..|.+|++.|++.+..||.+
T Consensus 64 ~R~~~L~~RI~~L~~~v~~ld~~ 86 (279)
T 3p8c_D 64 FRVNSLQERVDRLSVSVTQLDPK 86 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHhccccccc
Confidence 34444444444444444444443
No 71
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.72 E-value=14 Score=21.81 Aligned_cols=26 Identities=8% Similarity=0.058 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.|+..|+.+++.|-.+++-|...|..
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655543
No 72
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.40 E-value=42 Score=20.68 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v 73 (85)
..|...++.++..||.++++++.++
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444
No 73
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=50.35 E-value=18 Score=23.32 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhccc
Q 034753 49 KSKLALLNEKLDTLERRLE-LLEVQVGTA 76 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le-~LEA~v~s~ 76 (85)
..-|..||+||....|--+ +||+++++|
T Consensus 60 ~~~L~~mn~Kls~a~rlYD~lLE~~l~~~ 88 (91)
T 2pjw_V 60 YNTLIEMNGKISEIMNIYDRLLEQQLQSI 88 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3468899999999988766 889988865
No 74
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=50.35 E-value=28 Score=20.82 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 33 NVRRLFEFLVQFEA----TTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 33 ~I~~i~~FLN~Fd~----scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
++..|-+||...+. +|......|.+++..|++++.-|+.....
T Consensus 18 sL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~ 64 (99)
T 1q08_A 18 SLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRS 64 (99)
T ss_dssp CHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667665532 56777788888888888888877766543
No 75
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=49.45 E-value=10 Score=21.30 Aligned_cols=24 Identities=21% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 51 KLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
|+.+|+.|...|...-..||..|.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~ 25 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVA 25 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
Confidence 345566666666666666666654
No 76
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=49.42 E-value=7.1 Score=26.09 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
.+.+.|.+++..|++.++.|+..+....
T Consensus 87 ~q~~~L~~~i~~l~~~l~~l~~~i~~~~ 114 (146)
T 3hh0_A 87 FQREVLLAEQERIAKVLSHMDEMTKKFQ 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666777777777777666543
No 77
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=49.22 E-value=23 Score=23.48 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 034753 51 KLALLNEKLDTLERRL 66 (85)
Q Consensus 51 KLa~lneKL~~LEr~l 66 (85)
.++.+.++++.++..|
T Consensus 120 ~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 120 ALAELEKRIGEVARKA 135 (151)
T ss_dssp HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 78
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=49.11 E-value=22 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCC
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGT-ASANP 80 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s-~~~~p 80 (85)
.++..-..+++.+|.+++.+|++|+. .|+.|
T Consensus 69 ~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P 100 (158)
T 3tul_A 69 KKTDTAKSVYDAATKKLTQAQNKLQSLDPADP 100 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 45556666777777777777777776 55555
No 79
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=48.51 E-value=5.1 Score=27.07 Aligned_cols=30 Identities=40% Similarity=0.523 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCc
Q 034753 54 LLNEKLDTLERRLELLEVQVGTASANPHLF 83 (85)
Q Consensus 54 ~lneKL~~LEr~le~LEA~v~s~~~~p~~~ 83 (85)
.|..-|..||..|+-||.-|.-+..+|+-|
T Consensus 71 EL~~~l~sie~dLeDLe~sI~ivE~np~kF 100 (130)
T 4dnd_A 71 ELRNGLRSIEWDLEDLEETIGIVEANPGKF 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHhc
Confidence 455666667777777776666666666544
No 80
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=48.41 E-value=83 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
.|+..++-.++.|+.+|+-++|+|.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 81
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=47.85 E-value=18 Score=20.36 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034753 52 LALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 52 La~lneKL~~LEr~le~LEA~v~ 74 (85)
+.+|+.|...|=.....||.+|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHH
Confidence 44444554444444445555443
No 82
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=47.84 E-value=11 Score=24.63 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 034753 53 ALLNEKLDTLERRLELLEVQVGTA 76 (85)
Q Consensus 53 a~lneKL~~LEr~le~LEA~v~s~ 76 (85)
+.+.++|+.||.++..|+.++...
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l 42 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELT 42 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888754
No 83
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=45.11 E-value=59 Score=23.08 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATTKSKLALLNEKLDTLERRLE 67 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le 67 (85)
++|++||..++. ++..++++++.+++.++
T Consensus 178 ~~I~~~l~~~~~----~i~~~~~~~~~~~~~~~ 206 (412)
T 3okg_A 178 RRIVAKVEALME----RVREVRRLRAEAQKDTE 206 (412)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 577888888875 33444444444444444
No 84
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=44.70 E-value=1.2e+02 Score=24.75 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=38.5
Q ss_pred hhHHHHHHHhhhhHH---------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 034753 10 AVNVGIAVQADWENR---------------EFISHISLNVRRLFEFLVQFEATT---KSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 10 ~~~v~~~iq~DW~nR---------------E~ie~Is~~I~~i~~FLN~Fd~sc---r~KLa~lneKL~~LEr~le~LEA 71 (85)
+......||..|..| ..+|.+...|+.+++ +.|+++- +.-|..++.|++.||..+..++.
T Consensus 114 a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 114 SFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVN--SNIPTNLRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344556777777776 566666666665443 3344332 34566667777777777777776
Q ss_pred hh
Q 034753 72 QV 73 (85)
Q Consensus 72 ~v 73 (85)
.-
T Consensus 192 ~c 193 (461)
T 3ghg_B 192 YC 193 (461)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 85
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=44.32 E-value=92 Score=22.88 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 24 REFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLE 63 (85)
Q Consensus 24 RE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LE 63 (85)
++||.+++..+.+-. .+++...-..|+..+.+++...|
T Consensus 138 ~~YI~fv~~~~~~~l--~~~l~~~i~~r~~~l~~qi~~~~ 175 (280)
T 3b8m_A 138 SGYIDYISALVVKES--IENVRNKLEIKTQFEKEKLAQDR 175 (280)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887766543 13444333345555555555544
No 86
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=43.89 E-value=31 Score=26.01 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 48 TKSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 48 cr~KLa~lneKL~~LEr~le~LEA~v 73 (85)
|...|..+++++..|+.+++-+++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555444
No 87
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=43.41 E-value=31 Score=22.25 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 034753 51 KLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v 73 (85)
++..|+.+++.|+.+|+.|+..+
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777666554
No 88
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=43.28 E-value=72 Score=21.32 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccc
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLER-------RLELLEVQVGTA 76 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr-------~le~LEA~v~s~ 76 (85)
.+.+||..|-..-+.-...|..-|+.|++ -=++|-.++...
T Consensus 120 ~t~~~l~~~l~eqe~~~~~l~~~l~~l~~~g~~l~~~d~~l~~~~~~~ 167 (189)
T 3oj5_A 120 LGEQFMQWFLQEQIEEVALMATLVRVADRAGANLFELENFVAREVDVA 167 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhHHHHHHHHhhCCC
Confidence 46788888888777777788888888887 445666666543
No 89
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=43.20 E-value=23 Score=19.62 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 51 KLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
|+.+|+.|+..|=.+...||..|.+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~R 26 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHH
Confidence 4556666666666666666666543
No 90
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.19 E-value=57 Score=20.14 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034753 51 KLALLNEKLDTLERRLELLE 70 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LE 70 (85)
+.+.+..++..+++.+..|+
T Consensus 25 ~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 25 RIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444443
No 91
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=43.03 E-value=68 Score=23.01 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATTKSKLALLNEKLDTLERRLE 67 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le 67 (85)
++|+++|..|...|..-.+.++++++.|+.-..
T Consensus 379 ~~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~ 411 (464)
T 2y7c_A 379 AEIVRRVEQLFAYADTIEKQVNNALARVNNLTQ 411 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777776665555555555555554433
No 92
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.60 E-value=24 Score=19.43 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034753 52 LALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 52 La~lneKL~~LEr~le~LEA~v~ 74 (85)
+.+|++|+..|=.+-..||..|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~ 24 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHH
Confidence 44556666555555556666554
No 93
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.24 E-value=57 Score=19.97 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034753 27 ISHISLNVRRLFEFLVQFE--ATTKSKLALLNEKLDTLERRLELLEVQ 72 (85)
Q Consensus 27 ie~Is~~I~~i~~FLN~Fd--~scr~KLa~lneKL~~LEr~le~LEA~ 72 (85)
|+.+..-|..+-.-|+.=+ .+--.|++.+..+|..++..|+.++.+
T Consensus 31 Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 31 LEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777776422 223457777777777777777655543
No 94
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.22 E-value=21 Score=22.70 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
+|-.||..++.+=+.||.+|.-||.++.
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3456777777777777777777776654
No 95
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.19 E-value=25 Score=19.39 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 52 LALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 52 La~lneKL~~LEr~le~LEA~v~s 75 (85)
+.+|++|+..|=..-..||+.|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHH
Confidence 445666666555555566666653
No 96
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=42.11 E-value=22 Score=25.33 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATTK 49 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr 49 (85)
++|++||.+++..+.
T Consensus 369 ~~I~~~l~~~d~~i~ 383 (412)
T 3okg_A 369 RRIVAYLDQIQQQVA 383 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888876554
No 97
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=41.97 E-value=82 Score=21.64 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.+.+.|.+-...-+.+++.|.+.+..|+..++.++.....
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~ 118 (278)
T 1r8e_A 79 ELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEY 118 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4456667777777889999999999999998888766543
No 98
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.84 E-value=10 Score=28.83 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVGTASANPHLFT 84 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~s~~~~p~~~~ 84 (85)
..|...|.+.|+.+.++++.|..++.....+|..+.
T Consensus 67 ~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iG 102 (251)
T 3m9b_A 67 AARNSKLMETLKEARQQLLALREEVDRLGQPPSGYG 102 (251)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 345555677888888999999999999999888764
No 99
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.33 E-value=50 Score=18.98 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034753 49 KSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA 71 (85)
+.|-..|+.|...||.++.+|++
T Consensus 9 E~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555543
No 100
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=41.30 E-value=9.3 Score=24.85 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 32 LNVRRLFEFLV---QF--EATTKSKLALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 32 ~~I~~i~~FLN---~F--d~scr~KLa~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
.++.++.++.. +| ..+|..+|+.+..+|..|...+--++..++.+.
T Consensus 39 egl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 39 EALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp THHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555543 35 667788888888888888877777766665543
No 101
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=41.22 E-value=59 Score=22.88 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATT 48 (85)
Q Consensus 35 ~~i~~FLN~Fd~sc 48 (85)
++|++||.++|..|
T Consensus 172 ~~I~~~l~~ld~~i 185 (425)
T 1yf2_A 172 KQIAKILTKIDEGI 185 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788888777544
No 102
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.07 E-value=62 Score=19.96 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
+.++..+++++..|++.+..|+.++.
T Consensus 77 ~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 77 KNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778888888888887777765
No 103
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=40.89 E-value=81 Score=21.25 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEATTKSK-----LALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K-----La~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
.-+|.++.+-..-..+..++.+--.-|... =.-|.+-|..+|..+.+|++.+.+.|
T Consensus 113 ~~~eml~~~l~~~~~~i~~~r~~i~~ae~~~D~~T~dll~~il~~~Ek~~w~L~a~L~~~~ 173 (175)
T 2wlu_A 113 TVAQHLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFTAAKTEAEKTIWMLQAERGQGP 173 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 778888888888888888888877777653 22467889999999999999998654
No 104
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=40.75 E-value=1e+02 Score=24.86 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccCCCC
Q 034753 22 ENREFISHISLNVRRLFEFLVQ---FEATTKSKLALLNEKLDTLERRLELLEVQV----GTASANP 80 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~---Fd~scr~KLa~lneKL~~LEr~le~LEA~v----~s~~~~p 80 (85)
=|-|.+..+|....-++.++.. |+. -..+...+.++|..+|.++..+|+++ .++|+-|
T Consensus 150 F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~-l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~ipN~~ 214 (536)
T 3err_A 150 YNYEIVNRASLAAGPMVKWAIAQLNYAD-MLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPP 214 (536)
T ss_dssp CSHHHHHHHCTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcchhHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3567788888888888887743 442 34556677777777777777655544 4556544
No 105
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.44 E-value=75 Score=24.42 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
+.+|..++.||+.|+.++..|+.++.
T Consensus 32 ~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 32 SEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777654
No 106
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=39.71 E-value=65 Score=20.63 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 38 FEFLVQFEATTKSKLALLNEKLDTLERRLELLE 70 (85)
Q Consensus 38 ~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LE 70 (85)
.+|..++-..-+.+|......+..||+.|..+.
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666666777899999999999999988866
No 107
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=39.18 E-value=37 Score=26.12 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
+..|..++.||+.|+.++..||.++..
T Consensus 24 ~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 24 QEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456667778888888888888887665
No 108
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=38.39 E-value=66 Score=20.36 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 46 ATTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 46 ~scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.-|+..+-+|++++.+=-=+|-||..-+++
T Consensus 36 e~Ck~sIrrLE~evn~ErFrmIYLQTlLAk 65 (72)
T 1k1f_A 36 ERAKASIRRLEQEVNQERFRMIYLQTLLAK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 379999999999999988899999988876
No 109
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=38.37 E-value=66 Score=23.12 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 33 NVRRLFEFLVQ----FEATTKSKLALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 33 ~I~~i~~FLN~----Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
++..|-++|.. .....+.++..|.+++..|++.+..|+..+....
T Consensus 62 sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~ 110 (249)
T 3qao_A 62 PLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEK 110 (249)
T ss_dssp CHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555542 2345567777778888888888877777765443
No 110
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=36.50 E-value=82 Score=20.03 Aligned_cols=31 Identities=13% Similarity=0.334 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVGTASANP 80 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~s~~~~p 80 (85)
+.+...+.-+|..+|.++.-||. -..+|.-|
T Consensus 21 ~~ev~t~~~~l~~~e~~vqaL~~-ag~ip~AP 51 (74)
T 1avy_A 21 RQEVNTAKGNISSLQGDVQALQE-AGYIPEAP 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCC
T ss_pred heeeccccchhhhhhhhhHHHHh-cCCCCCCC
Confidence 34445566666666666666664 34455545
No 111
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=36.50 E-value=35 Score=19.75 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 034753 56 NEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 56 neKL~~LEr~le~LEA~v~ 74 (85)
+...++||..++-||..+.
T Consensus 11 ERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776654
No 112
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=36.31 E-value=1.2e+02 Score=21.91 Aligned_cols=38 Identities=8% Similarity=0.217 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 24 REFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLE 63 (85)
Q Consensus 24 RE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LE 63 (85)
++||.+++..+.+-.. +.+...-..|+..+.+++...|
T Consensus 123 ~~YI~~v~~~~~~~l~--~~l~~~~~~r~~~l~~qi~~~~ 160 (265)
T 3b8o_A 123 RQYVAFASQRAASHLN--DELKGAWAARTIQMKAQVKRQE 160 (265)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789888887776542 4555444466667777766666
No 113
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=36.31 E-value=37 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 32 LNVRRLFEFLVQFEATTKSKLALLNEKLDTLERR 65 (85)
Q Consensus 32 ~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~ 65 (85)
.++...-+++..|-.-++..|..+++-|..||+.
T Consensus 4 ~~m~~~~ell~~FleEa~E~L~~le~~Ll~le~~ 37 (144)
T 3kyj_A 4 DAFDEMDEIWALYADDGAQALDAMEASLLALQAG 37 (144)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555566888889888999999999888888763
No 114
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=35.60 E-value=41 Score=23.66 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.+|..|.++|+.|-++++-|-.++..
T Consensus 105 aqLe~ls~qL~~ls~~v~~L~~q~~~ 130 (140)
T 3iyn_Q 105 AQLDSLTRELNVVSQQLLDLRQQVSA 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666655543
No 115
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.32 E-value=57 Score=17.91 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
|.|-+....-+..|+++-.+||.++.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 67778888888889999889988874
No 116
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=34.35 E-value=68 Score=18.45 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 39 EFLVQFEATTKSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 39 ~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v 73 (85)
.=+|+.=..|..+++.++++...-...++.||+++
T Consensus 22 ~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~ 56 (66)
T 3m0a_A 22 CVLNREVERVAMTAEACSRQHRLDQDKIEALSSKV 56 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHH
Confidence 33666666677777777666555555666666654
No 117
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=34.28 E-value=72 Score=19.61 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 38 FEFLVQFEATTKSKLALLNEKLDTLER 64 (85)
Q Consensus 38 ~~FLN~Fd~scr~KLa~lneKL~~LEr 64 (85)
-+++..|-..++..|..+++-|..||.
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~ 31 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEK 31 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357778888888888888888877764
No 118
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.96 E-value=40 Score=18.66 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 51 KLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
|+.+|++|...|=..=+.||+.|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHH
Confidence 445566666555555556666554
No 119
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.81 E-value=70 Score=18.47 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
+..++.|..|+..|..+++-|.+++.+
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777777653
No 120
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=33.43 E-value=57 Score=20.79 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034753 49 KSKLALLNEKLDTLERRLELL 69 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~L 69 (85)
..|+.+|+.|+..+++++.--
T Consensus 15 ~~~~~~l~~~i~~~~~~~~~g 35 (105)
T 2lme_A 15 AHKFRQLDNRLDKLDTRVDKG 35 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888877743
No 121
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.37 E-value=38 Score=18.76 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 51 KLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
|+.+|++|+..|=..=..||+.|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~R 26 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELAR 26 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHH
Confidence 4556666666665555567776654
No 122
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.24 E-value=35 Score=18.79 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034753 52 LALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 52 La~lneKL~~LEr~le~LEA~v~ 74 (85)
+.+|++|...|=..-..||+.|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHH
Confidence 34555555555555555665554
No 123
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=33.16 E-value=44 Score=18.87 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHH-------HHHHHHhhc
Q 034753 53 ALLNEKLDTLERR-------LELLEVQVG 74 (85)
Q Consensus 53 a~lneKL~~LEr~-------le~LEA~v~ 74 (85)
++.++.||.||++ |.-.||++.
T Consensus 6 arveqelqaleargtdsnaelrameaklk 34 (40)
T 1abz_A 6 ARVEQELQALEARGTDSNAELRAMEAKLK 34 (40)
T ss_dssp HHHHHHHHHHHHTCSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 5667778888763 556666654
No 124
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.02 E-value=38 Score=18.72 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 51 KLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
|+.+|++|...|=..-..||..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHH
Confidence 4456666666665566666666653
No 125
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.48 E-value=76 Score=18.73 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
.++..|+.++..|+..-..|++.+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666554
No 126
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=32.43 E-value=1.1e+02 Score=24.18 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=32.3
Q ss_pred hhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 034753 20 DWENREFIS--HISLNVRRLFEFLVQFEATTKSKLALLN---EKLDTLERR 65 (85)
Q Consensus 20 DW~nRE~ie--~Is~~I~~i~~FLN~Fd~scr~KLa~ln---eKL~~LEr~ 65 (85)
.|+..-|-. -|..-+..|..=+.+-|...|.|.+..| ..|+.+||+
T Consensus 115 ~Wd~aKyp~~~~L~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK 165 (392)
T 1u7l_A 115 QWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERK 165 (392)
T ss_dssp CCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 465544321 2444455666667788999999999998 788888885
No 127
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.30 E-value=70 Score=24.80 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCCCCC
Q 034753 48 TKSKLALLNEKLDTLERRLELLEVQVG----TASANPH 81 (85)
Q Consensus 48 cr~KLa~lneKL~~LEr~le~LEA~v~----s~~~~p~ 81 (85)
-..+...+.+++..||.++.-+|+++. ++|+-|+
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~ 106 (421)
T 1ses_A 69 LIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPW 106 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 356667778888888888877766654 6776654
No 128
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.04 E-value=66 Score=20.30 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
.|||..=+|...||++=..||+++.
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777888888888777777764
No 129
>1m48_A Interleukin-2; four-helix bundle, small molecule complex, cytokine; HET: FRG; 1.95A {Homo sapiens} SCOP: a.26.1.2 PDB: 1m47_A* 1m49_A* 1m4c_A 1pw6_A* 1z92_A 2b5i_A* 1py2_A* 3ink_C 2erj_D 1qvn_A* 1irl_A 1m4b_A* 1m4a_A* 1nbp_A* 3qb1_A 3qaz_A
Probab=31.65 E-value=63 Score=22.54 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Q 034753 23 NREFISHISLNVRR------------------LFEFLVQFEATTKSKLAL 54 (85)
Q Consensus 23 nRE~ie~Is~~I~~------------------i~~FLN~Fd~scr~KLa~ 54 (85)
.+++|..|+-.+.+ |++|||++-.-|.+=+.+
T Consensus 82 ~~~~isNInvtv~~LkGset~f~Ceyddet~tivEFln~WItFCQsi~st 131 (133)
T 1m48_A 82 PRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFCQSIIST 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCCCCBCSSCBCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhheeeeeccCCCccceeeccCchhhHHHHHHHHHHHHHHHHhc
Confidence 68899999888875 689999999999876554
No 130
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.44 E-value=1.2e+02 Score=20.24 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 26 FISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLEL 68 (85)
Q Consensus 26 ~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~ 68 (85)
.|+.+..-|-.+-.=|.+|-.-++....+|..++..||..|+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888889999999999999999999999998875
No 131
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=31.25 E-value=1.3e+02 Score=20.92 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEATTKSK-----LALLNEKLDTLERRLELLEVQVGTASA 78 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K-----La~lneKL~~LEr~le~LEA~v~s~~~ 78 (85)
.-+|.++.+-..-..+..++.+--.-|... =.-|.+-|...|..+..||+.+..++.
T Consensus 129 ~~~emL~~ll~~e~~~i~~~re~i~~aee~~D~~T~dll~~il~~~Ekh~w~L~a~L~~~~~ 190 (199)
T 2xgw_A 129 TVAQHLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFTAAKTEAEKTIWMLQAERGQGPA 190 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 678888888888888888888877777653 234678899999999999999988765
No 132
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=31.10 E-value=83 Score=20.97 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQ 72 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~ 72 (85)
+.+|+..+++|..||.+|+.||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ 39 (192)
T 1ca9_A 16 ERSIGLKDLAMADLEQKVLEMEAS 39 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467777888888888888888764
No 133
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=31.08 E-value=19 Score=19.54 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034753 50 SKLALLNEKLDTLERRLELLE 70 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LE 70 (85)
.|++.|++|-..-|+++--||
T Consensus 7 qkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 7 QKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHTSSHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 134
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=30.94 E-value=65 Score=19.81 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGTA 76 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s~ 76 (85)
.|-+.||.|+.+|-..++-+-..+.+-
T Consensus 32 AKWaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 32 AKWTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 378899999999999999888777663
No 135
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.78 E-value=1.8e+02 Score=22.26 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034753 47 TTKSKLALLNEKLDTLERRL 66 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~l 66 (85)
+-++||..|.++|..|+.++
T Consensus 37 ~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 37 VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666544
No 136
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.21 E-value=53 Score=24.01 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
.++..+.+.++.+|++++-|++++.
T Consensus 155 ~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 155 DKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445555555444443
No 137
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=30.15 E-value=1.1e+02 Score=21.39 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATTKSKLALLNEKLDTLERRL 66 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~l 66 (85)
++|+++|..++..+ ..++++++.|+..-
T Consensus 382 ~~I~~~l~~ld~~i----~~~~~~~~~l~~~k 409 (425)
T 1yf2_A 382 KQIAKILSSVDKSI----ELKKQKKEKLQRMK 409 (425)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 45677777666433 34444555544433
No 138
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=30.06 E-value=1.2e+02 Score=21.94 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEAT------TKSKLALLNEKLDTLER 64 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~s------cr~KLa~lneKL~~LEr 64 (85)
.+.-|.+.+..-+.+.-..|+++..+ .+.|+..++++++.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~~~~i~e 233 (244)
T 3gnl_A 185 QSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIALVED 233 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 35677788888888877777777644 34566666666665553
No 139
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.86 E-value=1e+02 Score=19.22 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034753 52 LALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 52 La~lneKL~~LEr~le~LEA~v 73 (85)
+..++.+|+..|..+..|=..+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444443
No 140
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=29.80 E-value=1.2e+02 Score=19.77 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEATTKSK-----LALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K-----La~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
.-+|.++.+-..-..+..++.+--.-|... =.-|.+-|..+|..+-+|++.+.+.|
T Consensus 94 ~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~l~~~~ 154 (156)
T 2bk6_A 94 TMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAP 154 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 677888888888888888888877777663 22457888999999999999998654
No 141
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=29.67 E-value=62 Score=20.93 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 37 LFEFLVQFEATTKSKLALLNEKLDTLERRLE 67 (85)
Q Consensus 37 i~~FLN~Fd~scr~KLa~lneKL~~LEr~le 67 (85)
..+.|.+--..-+.+++.|.+.+..|+..+.
T Consensus 80 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 80 VKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566777777777777766554
No 142
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=29.66 E-value=19 Score=24.81 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=22.5
Q ss_pred cccC-CcchhHHHHHHHhhhhHHHHHHHHHH
Q 034753 3 RAGG-ITNAVNVGIAVQADWENREFISHISL 32 (85)
Q Consensus 3 ~~~~-~~~~~~v~~~iq~DW~nRE~ie~Is~ 32 (85)
..|+ +..+..+-.++++||.+ +|-+...+
T Consensus 157 ~~g~~v~~t~~~l~~l~~~~~~-~fk~~~~l 186 (208)
T 1yac_A 157 QAGAQLMTWFGVACELHRDWRN-DIAGLATL 186 (208)
T ss_dssp HHTCEEECHHHHHHHHHCCGGG-CHHHHHHH
T ss_pred HcCCEEeeHHHHHHHHHHHhhh-hHHHHHHH
Confidence 3444 67888999999999999 88765543
No 143
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.65 E-value=88 Score=26.36 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhcc
Q 034753 24 REFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLD-------TLERRLELLEVQVGT 75 (85)
Q Consensus 24 RE~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~-------~LEr~le~LEA~v~s 75 (85)
|..++.++.+=+.+.++.+.-...=+.|+.+.++--. .||+++.||+.+|..
T Consensus 70 KnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 70 KNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
No 144
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.60 E-value=68 Score=19.79 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLERRLELLE 70 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LE 70 (85)
++++=||.==..=...+..|..+|..|-.++.-++
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444433333344444444444444444333
No 145
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=29.43 E-value=1.5e+02 Score=20.97 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEATTKSK----LALLNEKLDTLERRLELLEVQVGTASANPH 81 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K----La~lneKL~~LEr~le~LEA~v~s~~~~p~ 81 (85)
.-+|+++.+-..-..+..++.+--.-|... =.-|.+-|..+|..+.+|++.+...+.-|.
T Consensus 132 ~~~emL~~ll~~e~~~i~~~re~i~~aee~D~~T~dLl~~il~~~EkhiW~L~a~L~~~~~~~~ 195 (211)
T 2c2j_A 132 DDAQVIQFFTYQYETVGQRIHQRVGDVEKVDPTTANLLQEVEHIIEKYQWQMRAFLQNTPTDPN 195 (211)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHGGGCCBTTBCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 556777777666667777776665555532 123577888999999999999998776664
No 146
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=29.19 E-value=27 Score=19.01 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 48 TKSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 48 cr~KLa~lneKL~~LEr~le~LEA~v 73 (85)
-+.|+..|...+..+|.++.-++..|
T Consensus 9 vKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777776666655
No 147
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.94 E-value=91 Score=18.23 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.+...|..+...|+..-..|+++++.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666543
No 148
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=28.93 E-value=68 Score=20.59 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQ 72 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~ 72 (85)
|.|+..|.+|...||+.=.+|-.-
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999887777543
No 149
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=28.87 E-value=50 Score=21.63 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHH
Q 034753 25 EFISHISLNVRRLFEFL-------VQFEA-TTKSKLALLNEKLDTLERR 65 (85)
Q Consensus 25 E~ie~Is~~I~~i~~FL-------N~Fd~-scr~KLa~lneKL~~LEr~ 65 (85)
+-++.|+..|.++-.|| ..||. +|..-|..|..+|..+..+
T Consensus 58 ~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~ 106 (111)
T 2l3l_A 58 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRG 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555554444 44553 4555555555555544433
No 150
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.76 E-value=1e+02 Score=18.64 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v 73 (85)
..++..|+.++..++.++.-|+..+
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666655554
No 151
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.64 E-value=62 Score=18.56 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034753 48 TKSKLALLNEKLDTLER 64 (85)
Q Consensus 48 cr~KLa~lneKL~~LEr 64 (85)
++.|++.+..||..||.
T Consensus 21 te~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555553
No 152
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=28.50 E-value=1.2e+02 Score=21.75 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATT 48 (85)
Q Consensus 35 ~~i~~FLN~Fd~sc 48 (85)
++|++||.++|.-+
T Consensus 170 ~~I~~~l~~~d~~i 183 (406)
T 1ydx_A 170 HAIANTLSVFDERL 183 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788888777543
No 153
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=28.47 E-value=1.3e+02 Score=19.88 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcccC
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLERRL--ELLEVQVGTAS 77 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr~l--e~LEA~v~s~~ 77 (85)
.+.+||..|-..-+.-...|+..|..+++-= .||-.++..++
T Consensus 136 ~t~~~L~~il~eEe~h~~~l~~~l~~i~~~g~~~yl~~~~~~~~ 179 (182)
T 3fvb_A 136 VSKQLFDELLADEEGHIDFLETQLDLLAKIGGERYGQLNAAPAD 179 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHcccCC
Confidence 5889999999888888888888888888655 68888876554
No 154
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.08 E-value=2.4e+02 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v 73 (85)
+..+..+++||+.||..+..+....
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777666553
No 155
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.94 E-value=57 Score=22.08 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034753 51 KLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA 71 (85)
.++.++.+|..||.+++.||.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 15 MLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 455556666666666666664
No 156
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=27.61 E-value=62 Score=24.17 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.||..|++.|...|+..-.-||+++.
T Consensus 131 ~kl~~LeqELvraEae~lvaEAqL~n 156 (234)
T 3plt_A 131 TKIPVLEQELVRAEAESLVAEAQLSN 156 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46667777777777777777777754
No 157
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.46 E-value=60 Score=23.65 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
..+..++++++.|+..++.+++.+.
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~ 250 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVA 250 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 158
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=27.31 E-value=1.2e+02 Score=24.05 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHH-------HHHH-------------HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 034753 20 DWENREFISHISLNVR-------RLFE-------------FLVQFEATT---------KSKLALLNEKLDTLERRLELLE 70 (85)
Q Consensus 20 DW~nRE~ie~Is~~I~-------~i~~-------------FLN~Fd~sc---------r~KLa~lneKL~~LEr~le~LE 70 (85)
||.-|+|-.+|+.+.+ .|+. +.+-|=.-| -.++..-++|+++++...+.|.
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~ 204 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALR 204 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999998755 3433 333443333 2478888999999999999999
Q ss_pred HhhcccCC
Q 034753 71 VQVGTASA 78 (85)
Q Consensus 71 A~v~s~~~ 78 (85)
.+|++...
T Consensus 205 ~Ki~~y~~ 212 (374)
T 2y9y_A 205 RKLSEYKN 212 (374)
T ss_dssp HHHTTCSS
T ss_pred HHHHHccC
Confidence 99988765
No 159
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.12 E-value=1.1e+02 Score=20.58 Aligned_cols=28 Identities=11% Similarity=0.356 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
..+..+..+.+++..|++++--||+.+.
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777776654
No 160
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=26.85 E-value=71 Score=21.07 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 33 NVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 33 ~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
++..|-++|..-+.++..++..|.++...|+++++-|+..+..
T Consensus 63 sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~ 105 (146)
T 3hh0_A 63 SLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSH 105 (146)
T ss_dssp CHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556665444455666667777777777777777665543
No 161
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=26.78 E-value=27 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 034753 50 SKLALLNEKLDTLERRLELLEVQ 72 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~ 72 (85)
.||..|.+||..||++++-|+..
T Consensus 343 ~~l~~~~~~~~~l~k~~~~~~~~ 365 (372)
T 3pmo_A 343 RQLDDMARRLQQLEKRLAAVTSS 365 (372)
T ss_dssp HTHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 46777888888888888766543
No 162
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=26.66 E-value=1e+02 Score=18.21 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA 71 (85)
+.|.|+..|+..|.+.-+.+.-||.
T Consensus 11 ~~Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5788999999999999998888885
No 163
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=26.49 E-value=1.1e+02 Score=19.30 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcccC
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLERRL--ELLEVQVGTAS 77 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr~l--e~LEA~v~s~~ 77 (85)
.+.+||..|-..-+.-...|...|..+++-= .||-.++++.+
T Consensus 115 ~t~~~l~~~~~eEe~h~~~l~~~l~~i~~~g~~~yl~~~~~~~~ 158 (161)
T 3gvy_A 115 PSKMLFEELIADEEGHIDYLETQIDLMGSIGEQNYGMLNAKPAD 158 (161)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHccCCC
Confidence 5788999998887777788888888888654 67777765443
No 164
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=26.48 E-value=1.1e+02 Score=19.75 Aligned_cols=26 Identities=42% Similarity=0.488 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 39 EFLVQFEATTKSKLALLNEKLDTLER 64 (85)
Q Consensus 39 ~FLN~Fd~scr~KLa~lneKL~~LEr 64 (85)
+++..|-..++..|..|++-|..||+
T Consensus 4 ell~~Fl~Ea~e~L~~l~~~l~~le~ 29 (139)
T 2ld6_A 4 EYLGVFVDETKEYLQNLNDTLLELEK 29 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888888888877664
No 165
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=26.45 E-value=1.1e+02 Score=18.33 Aligned_cols=27 Identities=41% Similarity=0.490 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 38 FEFLVQFEATTKSKLALLNEKLDTLER 64 (85)
Q Consensus 38 ~~FLN~Fd~scr~KLa~lneKL~~LEr 64 (85)
-+++..|-..++..|..+++-|..||+
T Consensus 4 ~~l~~~F~~e~~e~l~~l~~~l~~le~ 30 (105)
T 1tqg_A 4 MEYLGVFVDETKEYLQNLNDTLLELEK 30 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356777888888888888887777665
No 166
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.07 E-value=1.3e+02 Score=19.07 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 38 FEFLVQFEATTKSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 38 ~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA 71 (85)
.+||++=-...+..+..+++.+..+..++..++.
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333444444444444444444444433
No 167
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.86 E-value=1e+02 Score=17.72 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 034753 51 KLALLNEKLDTLERRLELLEVQ 72 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~ 72 (85)
-+..|......|+.++.-|+.+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555544
No 168
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.84 E-value=43 Score=22.17 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEAT-TKSKLALLNEKLDTLERRL 66 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~s-cr~KLa~lneKL~~LEr~l 66 (85)
+++..++.+...+..+.+ .+... .+.|+.+.+.||..|..+|
T Consensus 10 ~~~~~i~~l~~~l~~~l~---~~~~~~~k~~~~D~~KRL~~LfdkL 52 (118)
T 2yru_A 10 ESETLIEDVLRPLEQALE---DCHGHTKKQVCDDISRRLALLREQW 52 (118)
T ss_dssp CCCCCHHHHHHHHHHHHH---HHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777776666554 22111 1233555555555554444
No 169
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=25.72 E-value=81 Score=24.09 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
..+..+++||+.||.++..+.....
T Consensus 37 ~~le~l~~KIq~Le~~v~~~~~~~~ 61 (328)
T 1fzc_B 37 SILENLRSKIQKLESDVSAQMEYCR 61 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456778888888888877776643
No 170
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=25.66 E-value=92 Score=21.86 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 46 ATTKSKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 46 ~scr~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.--+.||..+=.+|..|-++|+.|-++|.-
T Consensus 94 ~~red~L~~~laqLe~ls~qL~~ls~~v~~ 123 (140)
T 3iyn_Q 94 SARDDKLTALLAQLDSLTRELNVVSQQLLD 123 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777888888888888888777764
No 171
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.53 E-value=93 Score=20.97 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
+.|+..++..+..++.+|.-||.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (192)
T 2gkw_A 6 ESQLSRHDQMLSVHDIRLADMDLRFQ 31 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 172
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=25.33 E-value=1.5e+02 Score=19.61 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEATTKSK-----LALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K-----La~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
.-+|+++.+-..-..+..++.+--.-|... =.-|.+-|..+|..+.+|++.+.+.|
T Consensus 103 ~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~L~~~~ 163 (165)
T 2cf7_A 103 TIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEKHIWMLQAELGQAP 163 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 567888888887888888887777677653 23466779999999999999998654
No 173
>1jek_A ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=25.32 E-value=41 Score=19.24 Aligned_cols=17 Identities=18% Similarity=0.474 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhccc
Q 034753 60 DTLERRLELLEVQVGTA 76 (85)
Q Consensus 60 ~~LEr~le~LEA~v~s~ 76 (85)
|-+-..+.+|||+|+.+
T Consensus 23 qhvakgirilearvarv 39 (42)
T 1jek_A 23 QHIAKGIRILEARVARV 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 44455677788887654
No 174
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=24.80 E-value=58 Score=23.34 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 40 FLVQFEATTKSKLALLNEKLDTLERRLELL 69 (85)
Q Consensus 40 FLN~Fd~scr~KLa~lneKL~~LEr~le~L 69 (85)
=+|+++ +..+++..+..||+.+|.+|.-|
T Consensus 67 ai~n~~-sA~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 67 SIKKTD-TAKSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Hhcccc-hHHHHHHHHHHHHHHHHHHHhcC
Confidence 346666 67888888888888888887643
No 175
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.76 E-value=1.1e+02 Score=18.41 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v 73 (85)
+..=.++++.|+-+|.+=.-||.-+
T Consensus 25 e~~Q~~ldq~Ld~Ie~QQ~ELe~~L 49 (64)
T 3t97_C 25 KLDQKRLDQELDFILSQQKELEDLL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555555555555444444
No 176
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=24.75 E-value=16 Score=27.65 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 43 QFEATTKSKLALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 43 ~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
..+...+.|+.+++..|+.|-++|+-||.+.+...
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 68 (385)
T 3p8q_A 34 QVSKQLQSDLMKVQEELTKSGTRLFDLEQKLASGA 68 (385)
T ss_dssp -----------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34566888999999999999999999999986543
No 177
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=24.57 E-value=1.6e+02 Score=21.10 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATTKSKLALLNEKLDTLERR 65 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~ 65 (85)
.+|+++|.+++. ++..++++++.|+..
T Consensus 358 ~~I~~~l~~id~----~i~~~~~~i~~L~~l 384 (406)
T 1ydx_A 358 RKAGKIVFLLDQ----KLDQYKKELSSLTVI 384 (406)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 356666665553 333344444444443
No 178
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=24.15 E-value=1.5e+02 Score=19.03 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 034753 21 WENREFISHISLNVRRLFEFLVQFEATTKSK-----LALLNEKLDTLERRLELLEVQVGTASAN 79 (85)
Q Consensus 21 W~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K-----La~lneKL~~LEr~le~LEA~v~s~~~~ 79 (85)
+.-+|.++.+-..-+.++..+++.-..|... -.-|..-+...|..+..|++.+...|+.
T Consensus 93 ~~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~~~l~~~Ek~~w~l~~~l~~~~g~ 156 (158)
T 2c41_A 93 LTVKQMIEEAIANHELIITEMHQDAEIATEAGDIGTADLYTRLVQTHQKHRWFLKEFLAKGDGL 156 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 4455666666666666666666665555543 2345677889999999999999877664
No 179
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=24.08 E-value=23 Score=18.47 Aligned_cols=9 Identities=33% Similarity=0.959 Sum_probs=7.3
Q ss_pred HhhhhHHHH
Q 034753 18 QADWENREF 26 (85)
Q Consensus 18 q~DW~nRE~ 26 (85)
-.||+||.|
T Consensus 17 ~r~wa~~nf 25 (26)
T 1sy9_B 17 LREWAYRNF 25 (26)
T ss_pred HHHHHHhcc
Confidence 469999976
No 180
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=24.06 E-value=1.7e+02 Score=19.66 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 41 LVQFEATTKSKLALLNEKLDTLERRLELL 69 (85)
Q Consensus 41 LN~Fd~scr~KLa~lneKL~~LEr~le~L 69 (85)
-......|+.++..+.+++..||+.+..-
T Consensus 116 A~~L~~~~~~~l~e~~~~l~~le~~i~~~ 144 (158)
T 3uv4_A 116 AQEIVNVCYQTLTEYDEHLTQLEKDICTA 144 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888888888888887753
No 181
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.86 E-value=70 Score=17.65 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 51 KLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 51 KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
|+.+|++|...|=..=..||..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
Confidence 344555555555444445665554
No 182
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.58 E-value=1.2e+02 Score=20.78 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 034753 57 EKLDTLERRLELLEV 71 (85)
Q Consensus 57 eKL~~LEr~le~LEA 71 (85)
.+|..||.++..||.
T Consensus 21 ~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 21 IRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 344455555555543
No 183
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=23.17 E-value=1.3e+02 Score=18.07 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 47 TTKSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 47 scr~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
.|-.+|...|+|..-+-.+|-.|+.+++
T Consensus 13 ~m~~~l~Evnekv~~ik~sL~~LD~~lg 40 (56)
T 3e7k_A 13 QMSIQIKEVGDRVNYIKRSLQSLDSQIG 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788888888888778777777664
No 184
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.01 E-value=1.2e+02 Score=19.65 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
+.++....+++..|..++..||.++.
T Consensus 88 ~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 88 KKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666665553
No 185
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=22.43 E-value=88 Score=19.26 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034753 54 LLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 54 ~lneKL~~LEr~le~LEA~v 73 (85)
+|.++|+.||.+|..|...+
T Consensus 6 ~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 6 ELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666665555
No 186
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.42 E-value=58 Score=25.19 Aligned_cols=8 Identities=13% Similarity=0.219 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 034753 59 LDTLERRL 66 (85)
Q Consensus 59 L~~LEr~l 66 (85)
+..++..+
T Consensus 26 ~~~~~~~~ 33 (403)
T 4etp_A 26 IKDTELGM 33 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 187
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.37 E-value=2.3e+02 Score=22.80 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hcccCCCCC
Q 034753 52 LALLNEKLDTLERRLELLEVQ----VGTASANPH 81 (85)
Q Consensus 52 La~lneKL~~LEr~le~LEA~----v~s~~~~p~ 81 (85)
...+.++|..||.++.-+|++ +.++|+-|+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~ 146 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILH 146 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 445566666666666655544 455666553
No 188
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=22.37 E-value=17 Score=23.37 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034753 49 KSKLALLNEKLDTLERRLELLEV 71 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA 71 (85)
...+..++.+|..||..+.-+-+
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~ 58 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRD 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666655554443
No 189
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=22.24 E-value=60 Score=22.00 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034753 49 KSKLALLNEKLDTLERRLE 67 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le 67 (85)
+.+++.++.|+..||..|.
T Consensus 52 k~~q~~~e~rI~~L~~~L~ 70 (158)
T 2p4v_A 52 KKRLREIDRRVRYLTKCME 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445444444444444443
No 190
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.79 E-value=1.2e+02 Score=17.29 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034753 52 LALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 52 La~lneKL~~LEr~le~LEA~v~ 74 (85)
+..|+.++..||..-..|..++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544443
No 191
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=21.60 E-value=2.1e+02 Score=20.02 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 034753 38 FEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVGTASANPH 81 (85)
Q Consensus 38 ~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~s~~~~p~ 81 (85)
++|+..|..-...=|.=..+=.+.|+.-...|+.++..+++.|.
T Consensus 209 ~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~~~~~~p~ 252 (256)
T 1zww_A 209 IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPR 252 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 45555554444444444445555566667778888888888774
No 192
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.60 E-value=1.6e+02 Score=19.59 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v 73 (85)
..+-..|..+|+.|+.+|+.|+..+
T Consensus 6 ~~~~~~L~~~i~~l~~~L~~lkqa~ 30 (122)
T 3viq_A 6 LSRRLKLEKEVRNLQEQLITAETAR 30 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777666544
No 193
>2p64_A F-BOX/WD repeat protein 1A; right handed super-helical bundle, ligase; 2.50A {Homo sapiens}
Probab=21.47 E-value=28 Score=20.74 Aligned_cols=22 Identities=5% Similarity=0.333 Sum_probs=15.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 034753 18 QADWENREFISHISLNVRRLFE 39 (85)
Q Consensus 18 q~DW~nRE~ie~Is~~I~~i~~ 39 (85)
=..|.+.|++++|-.=+.+++.
T Consensus 16 f~~Wse~eQvdfv~~L~~rm~h 37 (52)
T 2p64_A 16 FEQWSESDQVEFVEHLISQMCH 37 (52)
T ss_dssp HTTSCHHHHHHHHHHHHHTSCH
T ss_pred HHhccchHHHHHHHHHHHHhhH
Confidence 3579999888777655555444
No 194
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.40 E-value=1.1e+02 Score=23.72 Aligned_cols=26 Identities=27% Similarity=0.142 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 48 TKSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 48 cr~KLa~lneKL~~LEr~le~LEA~v 73 (85)
.+..+..++++|..-|..-..|-.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 29 TELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444444443
No 195
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.35 E-value=2.3e+02 Score=20.26 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 35 RRLFEFLVQFEATTKSKLALLNEKLDTLERRLELLE 70 (85)
Q Consensus 35 ~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LE 70 (85)
..+++|+-.-...+..+.+.|.++.+.|++..+-|=
T Consensus 124 ~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~ 159 (213)
T 1ik9_A 124 RELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556666666666666666555443
No 196
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=21.34 E-value=2.2e+02 Score=19.98 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccC
Q 034753 21 WENREFISHISLNVRRLFEFLVQFEATTKSK-----LALLNEKLDTLERRLELLEVQVGTAS 77 (85)
Q Consensus 21 W~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K-----La~lneKL~~LEr~le~LEA~v~s~~ 77 (85)
+.-+|+++.+-..-..+..++.+.-..|... =.-|.+-|..+|..+.+|++.+..-|
T Consensus 144 ~~~~emL~~ll~~e~~~i~~~re~i~~aee~~D~~T~dLl~~il~~~EkhiW~L~a~L~~~~ 205 (207)
T 2c2u_A 144 RDARTQVADLVQDLSRVGKGYRDDSQACDEANDPVTADMYNGYAATIDKIRWMLQAIMDDER 205 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 4677888888888888888888888778765 23467888899999999999997543
No 197
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=21.21 E-value=1.8e+02 Score=19.07 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 25 EFISHISLNVRRLFEFLVQFEATTKSKLALLNEKLDTLERRLEL 68 (85)
Q Consensus 25 E~ie~Is~~I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~ 68 (85)
++...+...+....+.|...|..--.+....++++..||..++.
T Consensus 18 ~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~ 61 (216)
T 2i0m_A 18 GLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIEL 61 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566666777777777766766666777777777777777653
No 198
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.19 E-value=1.8e+02 Score=18.99 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034753 36 RLFEFLVQFEATTKSKLALLNEKLDTLERRLELLEVQVG 74 (85)
Q Consensus 36 ~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~LEA~v~ 74 (85)
.-.+||++=-...+..+..+++.+..+..++..++..+.
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554445555555566666666666555555443
No 199
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.76 E-value=1.1e+02 Score=19.97 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s 75 (85)
.|-+.||+|+++|-..++-+-..+++
T Consensus 49 AKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 49 AKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999998888877766654
No 200
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.71 E-value=1e+02 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034753 49 KSKLALLNEKLDTLERRLELLEVQV 73 (85)
Q Consensus 49 r~KLa~lneKL~~LEr~le~LEA~v 73 (85)
++|+..|+++|+.+......+-+.+
T Consensus 177 K~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 177 KGTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666655555544444
No 201
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A
Probab=20.38 E-value=2.1e+02 Score=19.35 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 034753 22 ENREFISHISLNVRRLFEFLVQFEATTKSK----LALLNEKLDTLERRLELLEVQVGTASA 78 (85)
Q Consensus 22 ~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K----La~lneKL~~LEr~le~LEA~v~s~~~ 78 (85)
.-+|+++.+-..-..+..++.+--.-|... =.-|.+-|..+|..+.+|++.+...+.
T Consensus 101 ~~~eml~~~l~~~~~~i~~~r~~i~~ae~~D~~T~dll~~il~~~Ek~~w~L~a~L~~~~~ 161 (183)
T 2yw6_A 101 TVQAHLAALDLVYNGVIEDTRKSIEKLEDLDLVSQDLLIAHAGELEKFQWFVRAHLESAGG 161 (183)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 556677666666666666666655555532 123577888999999999999986543
No 202
>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*
Probab=20.36 E-value=1.4e+02 Score=18.92 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 034753 56 NEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 56 neKL~~LEr~le~LEA~v~s 75 (85)
+.....+++.++.||..++.
T Consensus 131 ~~~~~~~~~~l~~le~~L~~ 150 (214)
T 4id0_A 131 DGQRDKIRRALAVLEAEAIA 150 (214)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33445566667777766643
No 203
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=20.34 E-value=1.5e+02 Score=20.03 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034753 34 VRRLFEFLVQFEATTKSKLALLNEKLDTLER 64 (85)
Q Consensus 34 I~~i~~FLN~Fd~scr~KLa~lneKL~~LEr 64 (85)
++++.++=-+++ +-..||..+|..|+.+|+
T Consensus 10 lK~L~~veksv~-~~~kkl~~~~~el~~iek 39 (114)
T 1hx1_B 10 LKKLKHLEKSVE-KIADQLEELNKELTGIQQ 39 (114)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 445555444553 444566666666666654
No 204
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.29 E-value=1.7e+02 Score=18.35 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=29.6
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccC
Q 034753 26 FISHISLNV----RRLFEFLVQFEATTKSKLALLNEKLDTLERRLEL-LEVQVGTAS 77 (85)
Q Consensus 26 ~ie~Is~~I----~~i~~FLN~Fd~scr~KLa~lneKL~~LEr~le~-LEA~v~s~~ 77 (85)
-|+.+..++ .+.+.+|..|.++- . .|.+||+.||.++-. .+..++.+.
T Consensus 8 Kv~~LE~sld~LQTrfARLLaEy~ssQ-~---KLKqRit~LE~~~~~~~~~~~s~~~ 60 (74)
T 3swf_A 8 KVTRMESSVDLLQTRFARILAEYESMQ-Q---KLKQRLTKVEKFLKPLIDTEFSAIE 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHhcccCCCchhhcc
Confidence 344444444 35677778887543 3 467899999999885 444444443
No 205
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=20.29 E-value=76 Score=21.03 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034753 50 SKLALLNEKLDTLERRL 66 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~l 66 (85)
.++..|.++++.||+++
T Consensus 145 ~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 145 RTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 206
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=20.16 E-value=1.6e+02 Score=20.41 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 034753 50 SKLALLNEKLDTLERRLELLEVQVGTASAN 79 (85)
Q Consensus 50 ~KLa~lneKL~~LEr~le~LEA~v~s~~~~ 79 (85)
..+..++..|+.||-+..-+++..++.+.+
T Consensus 36 ~~i~q~d~elqQLefq~kr~~~e~~~q~~~ 65 (150)
T 4dci_A 36 NGIANADQQLAQLEQEGQTVVDQVRRQSAN 65 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456666777777777777666666664433
No 207
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=20.11 E-value=1.9e+02 Score=18.78 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcc
Q 034753 21 WENREFISHISLNVRRLFEFLVQFEATTKSK-----LALLNEKLDTLERRLELLEVQVGT 75 (85)
Q Consensus 21 W~nRE~ie~Is~~I~~i~~FLN~Fd~scr~K-----La~lneKL~~LEr~le~LEA~v~s 75 (85)
..-+|.++.+-.....+..++.+.-.-|... =.-|.+-|..+|..+-+||+.+.+
T Consensus 97 ~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~l~~ 156 (156)
T 2fjc_A 97 ITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 156 (156)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677888888888888888888887777763 234678888999999999998864
Done!