BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034762
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis
thaliana GN=RPB13.6 PE=2 SV=1
Length = 116
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/81 (83%), Positives = 75/81 (92%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVRAELAKHS 81
Y+LPHPL+YKIIVR S
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQS 81
>sp|Q86JJ5|RPB11_DICDI DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium
discoideum GN=polr2j PE=3 SV=1
Length = 120
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 66/81 (81%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+P+G KKV+ RDTKI NA+ FTI +E+HTIGN++RMQL D++++FAG
Sbjct: 1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60
Query: 61 YKLPHPLQYKIIVRAELAKHS 81
Y++PHPL++ + +R + ++
Sbjct: 61 YRMPHPLEHNVNIRIQTNNNT 81
>sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens
GN=POLR2J PE=1 SV=1
Length = 117
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 60/76 (78%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRAE 76
YK+PHPL++KII+R +
Sbjct: 61 YKVPHPLEHKIIIRVQ 76
>sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus
GN=POLR2J PE=3 SV=1
Length = 117
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 60/76 (78%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRAE 76
YK+PHPL++KII+R +
Sbjct: 61 YKVPHPLEHKIIIRVQ 76
>sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus
GN=Polr2j PE=2 SV=1
Length = 117
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 60/76 (78%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRAE 76
YK+PHPL++KII+R +
Sbjct: 61 YKVPHPLEHKIIIRVQ 76
>sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila
melanogaster GN=Rpb11 PE=3 SV=1
Length = 117
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 59/74 (79%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVR 74
YK+PHPL++K ++R
Sbjct: 61 YKVPHPLEHKFVIR 74
>sp|Q7PVQ9|RPB11_ANOGA DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae
GN=Rpb11 PE=2 SV=2
Length = 117
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 58/74 (78%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVR 74
YKLPHPL++K ++R
Sbjct: 61 YKLPHPLEHKFVLR 74
>sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens
GN=POLR2J2 PE=1 SV=1
Length = 115
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRAE 76
YK+PHPL++KII+R +
Sbjct: 60 YKVPHPLEHKIIIRVQ 75
>sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens
GN=POLR2J3 PE=2 SV=1
Length = 115
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FT+ +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRAE 76
YK+PHPL++KII+R +
Sbjct: 60 YKVPHPLEHKIIIRVQ 75
>sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis briggsae GN=rpb-11 PE=3 SV=1
Length = 122
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ + KK+ E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAG
Sbjct: 1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAG 59
Query: 61 YKLPHPLQYKIIVRAE 76
YK PHPL++KI++R +
Sbjct: 60 YKNPHPLEHKILLRVQ 75
>sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis elegans GN=rpb-11 PE=3 SV=1
Length = 122
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ + KK E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAG
Sbjct: 1 MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59
Query: 61 YKLPHPLQYKIIVRAELAKHS 81
YK PHPL++KI++R + ++
Sbjct: 60 YKNPHPLEHKILLRIQTTNNT 80
>sp|P87123|RPB11_SCHPO DNA-directed RNA polymerase II subunit RPB11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb11 PE=1 SV=1
Length = 123
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+RYE + G KV+YE D+K NAA T+E+E+HT+ N+L QL DE VLFAG
Sbjct: 1 MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59
Query: 61 YKLPHPLQYKIIVRAE 76
YK+PHPL + I+R +
Sbjct: 60 YKVPHPLNHNFILRVQ 75
>sp|P38902|RPB11_YEAST DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1
SV=1
Length = 120
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
Query: 61 YKLPHPLQYKIIVR 74
YK+ HP + +R
Sbjct: 61 YKVEHPFFARFKLR 74
>sp|Q8IER7|RPB11_PLAF7 Probable DNA-directed RNA polymerase II subunit RPB11
OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0023
PE=3 SV=1
Length = 126
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+ G KKV+ K + F I+ E+HTIGN++++QL +D VLFA Y
Sbjct: 8 NKPETVDLLVLAPGEKKVTCTISDKG-DCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAY 66
Query: 62 KLPHPLQYKI 71
+ PHPLQ I
Sbjct: 67 RQPHPLQNAI 76
>sp|Q4XS21|RPB11_PLACH Probable DNA-directed RNA polymerase II subunit RPB11
OS=Plasmodium chabaudi GN=PC000833.03.0 PE=3 SV=1
Length = 126
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+P G +KV + K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDKG-DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66
Query: 62 KLPHPLQYKI 71
+ PHPLQ I
Sbjct: 67 RQPHPLQNAI 76
>sp|Q4YZZ7|RPB11_PLABA Probable DNA-directed RNA polymerase II subunit RPB11
OS=Plasmodium berghei (strain Anka) GN=PB000758.01.0
PE=3 SV=1
Length = 126
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+P G +KV + K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDKG-DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66
Query: 62 KLPHPLQ 68
+ PHPLQ
Sbjct: 67 RQPHPLQ 73
>sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III subunit RPAC2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc19 PE=2 SV=1
Length = 125
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAELAKHS 81
+ + +F I++E+HT+GN LR + ++ V F GY +PHP + K+ R + A +
Sbjct: 32 LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPST 85
>sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III subunit RPAC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPC19 PE=1 SV=1
Length = 142
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
+ASF I E+HT+GN LR + ++ +V F GY +PHP + + +R
Sbjct: 59 TSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIR 104
>sp|Q61IX2|RPAC2_CAEBR Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis briggsae GN=CBG10036 PE=3 SV=1
Length = 145
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAE 76
S+E+D + + + E+HTIGN ++ L R + V F GY +PHPL+ KI+ R +
Sbjct: 54 SFEQDP---SNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQ 107
>sp|P34476|RPAC2_CAEEL Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis elegans GN=F58A4.9 PE=3 SV=1
Length = 144
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAE 76
S+E+D + + + E+HTIGN ++ L R + V F GY +PHPL+ KI+ R +
Sbjct: 53 SFEQDP---SNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQ 106
>sp|Q980K0|RPOL_SULSO DNA-directed RNA polymerase subunit L OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoL
PE=1 SV=1
Length = 92
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N IE E+HT+GN++ L R V FA Y PHPL KIIV+
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVK 56
>sp|P46217|RPOL_SULAC DNA-directed RNA polymerase subunit L OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=rpoL PE=3 SV=1
Length = 90
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N I+ EEHTIGN+L+ L + V FA Y LPHPL I ++
Sbjct: 11 NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIK 56
>sp|C3N7I8|RPOL_SULIY DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N IE E+HT+GN++ L + V FA Y PHPL KIIV+
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVK 56
>sp|C3NFY8|RPOL_SULIN DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoL PE=3 SV=1
Length = 92
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N IE E+HT+GN++ L + V FA Y PHPL KIIV+
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVK 56
>sp|C3MXM0|RPOL_SULIM DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N IE E+HT+GN++ L + V FA Y PHPL KIIV+
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVK 56
>sp|C3MRD1|RPOL_SULIL DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N IE E+HT+GN++ L + V FA Y PHPL KIIV+
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVK 56
>sp|C4KIP6|RPOL_SULIK DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoL PE=3 SV=1
Length = 92
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N IE E+HT+GN++ L + V FA Y PHPL KIIV+
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVK 56
>sp|C3MZG6|RPOL_SULIA DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoL PE=3 SV=1
Length = 92
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N IE E+HT+GN++ L + V FA Y PHPL KIIV+
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVK 56
>sp|Q6DRI4|RPAC2_DANRE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio
rerio GN=polr1d PE=3 SV=1
Length = 112
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
+F + E+HT+GN LR + + ++V F GY + HP + KI R
Sbjct: 22 CVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFR 66
>sp|Q5JE88|RPOL_PYRKO DNA-directed RNA polymerase subunit L OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoL PE=3
SV=1
Length = 94
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
N F +E E+HT N+L LH +E+V FAGY + HP+
Sbjct: 11 NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPI 49
>sp|B6YTH7|RPOL_THEON DNA-directed RNA polymerase subunit L OS=Thermococcus onnurineus
(strain NA1) GN=rpoL PE=3 SV=1
Length = 95
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
N F +E E+HT N+L LH +E+V FAGY + HP+
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPV 49
>sp|Q54ES6|RPC19_DICDI DNA-directed RNA polymerases I and III subunit rpc19
OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1
Length = 116
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAE 76
+ A+F E+HT+GN L L ++ V F+GY +PHP ++ +R +
Sbjct: 34 DCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQ 81
>sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos
taurus GN=POLR1D PE=2 SV=1
Length = 133
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVR 74
HP + KI +R
Sbjct: 74 HPSESKINLR 83
>sp|Q96YA7|RPOL_SULTO DNA-directed RNA polymerase subunit L OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rpoL PE=3 SV=1
Length = 93
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
N I+ EEHT+GN+L+ L + V FA Y PHPL II++
Sbjct: 11 NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILK 56
>sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo
sapiens GN=POLR1D PE=1 SV=1
Length = 133
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVR 74
HP + KI +R
Sbjct: 74 HPSESKINLR 83
>sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus
laevis GN=polr1d PE=3 SV=1
Length = 114
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
+ +F + E+HT+GN LR + ++ V F GY + HP + KI R
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFR 67
>sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus
musculus GN=Polr1d PE=2 SV=1
Length = 133
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVR 74
HP + KI +R
Sbjct: 74 HPSESKINLR 83
>sp|C5A5J3|RPOL_THEGJ DNA-directed RNA polymerase subunit L OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=rpoL PE=3 SV=1
Length = 95
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
N F +E E+HT N+L LH D++V FA Y + HP+
Sbjct: 11 NTFEFYLEGEDHTFANLLVETLHEDKHVKFAAYSIDHPI 49
>sp|A4YHV0|RPOL_METS5 DNA-directed RNA polymerase subunit L OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoL PE=3 SV=1
Length = 90
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
+++ ER+ + N I+ E+HT+GN++ +L + V+ A Y LPHPL+ +++++
Sbjct: 2 EIAVEREEE--NYLELRIQGEDHTLGNLIAGRLRSVKGVILATYYLPHPLKDELVIK 56
>sp|Q9VIZ0|RPAC2_DROME Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Drosophila melanogaster GN=l(2)37Cg PE=3 SV=1
Length = 105
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
+F E HT+GN L+ + R V F GY +PHP + K+ R
Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFR 61
>sp|Q5UQD9|YR470_MIMIV Putative DNA directed RNA polymerase subunit R470 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R470 PE=1 SV=1
Length = 357
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAELAKHSRV 83
E+HT+G IL L + E V AGY +PH L KI+V +L S +
Sbjct: 285 EDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSEI 330
>sp|C6A1R5|RPOL_THESM DNA-directed RNA polymerase subunit L OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rpoL PE=3 SV=1
Length = 95
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
N F + E+HT N+L LH +++V FA Y + HP+
Sbjct: 11 NLLEFYLVGEDHTFANLLSETLHENKHVTFAAYTIEHPV 49
>sp|O27372|RPOL_METTH DNA-directed RNA polymerase subunit L OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoL PE=3 SV=1
Length = 85
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL--QYKIIVRAELAKHS 81
N E E HT+ N+LR L DE V A Y + HP+ + ++ +RA K S
Sbjct: 9 NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKS 63
>sp|O30032|RPOL_ARCFU DNA-directed RNA polymerase subunit L OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoL PE=3 SV=1
Length = 86
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 24 DTKIINAAS----FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
+ KII+ I+ E HT N+L+ L DE+V+ A Y +PHPL
Sbjct: 2 EVKIIDIGEDYVRLVIKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPL 49
>sp|P57671|RPOL_PYRHO DNA-directed RNA polymerase subunit L OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=rpoL PE=3 SV=1
Length = 95
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
F +E E+HT N+L L D +V F Y + HP+
Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPI 49
>sp|Q8U4N1|RPOL_PYRFU DNA-directed RNA polymerase subunit L OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoL
PE=3 SV=1
Length = 95
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
N F +E E+HT N+L L + +V F Y + HP+
Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPI 49
>sp|B1L7Q7|RPOL_KORCO DNA-directed RNA polymerase subunit L OS=Korarchaeum cryptofilum
(strain OPF8) GN=rpoL PE=3 SV=1
Length = 98
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQ 68
N I E HT+ + L +L+ + V FAGY +PHPL+
Sbjct: 11 NEIRVLIRGETHTLLSPLVEELNSLDEVEFAGYDVPHPLK 50
>sp|Q9V2M4|RPOL_PYRAB DNA-directed RNA polymerase subunit L OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rpoL PE=3 SV=1
Length = 95
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
F +E E+HT N+L L + +V F Y + HP+
Sbjct: 14 EFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPI 49
>sp|Q8TZ81|RPOL_METKA DNA-directed RNA polymerase subunit L OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=rpoL PE=3 SV=1
Length = 112
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYK 70
E+HT+ N+LR L+R + ++ A Y++ HP+ K
Sbjct: 25 EDHTLCNLLRWALNRQDGII-ATYRIEHPILGK 56
>sp|B1ZW93|RIMO_OPITP Ribosomal protein S12 methylthiotransferase RimO OS=Opitutus
terrae (strain DSM 11246 / PB90-1) GN=rimO PE=3 SV=1
Length = 471
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 11 VVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHR 52
V+PE K D I+N SF +E +IG+IL + HR
Sbjct: 32 VIPEAEKA-----DVVIVNTCSFIDSSKEESIGHILEVHQHR 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,324,500
Number of Sequences: 539616
Number of extensions: 970187
Number of successful extensions: 2110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2057
Number of HSP's gapped (non-prelim): 59
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)