Query 034762
Match_columns 84
No_of_seqs 101 out of 403
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_K B13.6, DNA-directed RNA 100.0 9E-43 3.1E-47 236.3 9.3 82 1-82 1-82 (120)
2 3h0g_K DNA-directed RNA polyme 100.0 8.4E-43 2.9E-47 237.7 7.2 81 1-82 1-81 (123)
3 1xpp_A TA1416, DNA-directed RN 100.0 6E-32 2.1E-36 182.3 7.7 70 12-81 4-73 (115)
4 2pa8_L DNA-directed RNA polyme 100.0 3.2E-30 1.1E-34 167.4 7.5 61 22-82 4-64 (92)
5 2pa8_D DNA-directed RNA polyme 96.4 0.0028 9.6E-08 46.2 4.0 41 18-60 2-48 (265)
6 1bdf_A RNA polymerase alpha su 95.4 0.012 4.1E-07 42.8 3.4 42 17-60 12-58 (235)
7 1twf_C B44.5, DNA-directed RNA 95.3 0.0066 2.3E-07 46.1 2.0 35 17-53 6-40 (318)
8 3h0g_C DNA-directed RNA polyme 95.0 0.015 5E-07 44.0 2.9 36 16-53 4-39 (297)
9 2a6h_A DNA-directed RNA polyme 94.0 0.038 1.3E-06 41.8 3.3 37 18-56 10-51 (315)
10 3lu0_A DNA-directed RNA polyme 93.7 0.032 1.1E-06 42.7 2.4 39 18-58 13-56 (329)
11 3ba3_A Protein LP_0091, pyrido 66.7 7.7 0.00026 25.8 4.1 31 45-76 53-83 (145)
12 3u7z_A Putative metal binding 61.6 18 0.00063 23.0 5.0 36 14-49 4-39 (101)
13 1uct_A Immunoglobulin alpha FC 39.1 14 0.00048 24.3 1.7 23 27-49 188-213 (218)
14 3dhx_A Methionine import ATP-b 35.6 44 0.0015 20.5 3.6 37 30-66 66-102 (106)
15 1y80_A Predicted cobalamin bin 25.6 49 0.0017 22.1 2.7 37 28-64 89-127 (210)
16 1p6f_A NKP46, natural cytotoxi 24.7 16 0.00053 24.8 0.0 13 38-50 228-240 (242)
17 2i2x_B MTAC, methyltransferase 23.6 86 0.0029 21.9 3.8 39 27-65 123-163 (258)
No 1
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=100.00 E-value=9e-43 Score=236.30 Aligned_cols=82 Identities=43% Similarity=0.717 Sum_probs=80.4
Q ss_pred CCCCcccceeeeCCCceeeEEeecCCCcceeEEEEecCCcchHHHHHHHHhcCCceeEEeeeCCCCCCcceEEEEEeccC
Q 034762 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAELAKH 80 (84)
Q Consensus 1 mn~p~~~~~~~l~~ge~Ki~~~~~~~~~n~~~~~i~~EdHTLgNlLr~~Ll~~~~V~fAgY~vpHPl~~~i~l~Iqt~~~ 80 (84)
||||||||+|+|+||++||++..+++.+|+++|+|.||||||||+||++|+++|+|+||||+|||||+++++|||||+|+
T Consensus 1 mnap~~~e~f~l~~ge~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~ 80 (120)
T 1twf_K 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEG 80 (120)
T ss_dssp CCSCCSGGGTSCCTTCCSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTT
T ss_pred CCCCCccceeecCCCCceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 034762 81 SR 82 (84)
Q Consensus 81 ~~ 82 (84)
.+
T Consensus 81 ~~ 82 (120)
T 1twf_K 81 YD 82 (120)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 2
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-43 Score=237.66 Aligned_cols=81 Identities=49% Similarity=0.783 Sum_probs=79.4
Q ss_pred CCCCcccceeeeCCCceeeEEeecCCCcceeEEEEecCCcchHHHHHHHHhcCCceeEEeeeCCCCCCcceEEEEEeccC
Q 034762 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAELAKH 80 (84)
Q Consensus 1 mn~p~~~~~~~l~~ge~Ki~~~~~~~~~n~~~~~i~~EdHTLgNlLr~~Ll~~~~V~fAgY~vpHPl~~~i~l~Iqt~~~ 80 (84)
||||||||+|+| +|++||++..+++.+|+++|+|.||||||||+||++|+++|+|+||||+||||++++++|||||+|+
T Consensus 1 mnap~~~e~f~l-~ge~Kv~~~~dtk~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~ 79 (123)
T 3h0g_K 1 MNQPERYELIEL-MGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVED 79 (123)
T ss_dssp CCCCCGGGTSSC-SSCCSCCEEECSSSTTEEEEEEESCCSSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSS
T ss_pred CCCCCccceeEe-CCCcceEEecCCCCCceEEEEEeCCCcchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 034762 81 SR 82 (84)
Q Consensus 81 ~~ 82 (84)
.+
T Consensus 80 ~~ 81 (123)
T 3h0g_K 80 CS 81 (123)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 3
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=99.97 E-value=6e-32 Score=182.31 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=63.8
Q ss_pred eCCCceeeEEeecCCCcceeEEEEecCCcchHHHHHHHHhcCCceeEEeeeCCCCCCcceEEEEEeccCc
Q 034762 12 VPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAELAKHS 81 (84)
Q Consensus 12 l~~ge~Ki~~~~~~~~~n~~~~~i~~EdHTLgNlLr~~Ll~~~~V~fAgY~vpHPl~~~i~l~Iqt~~~~ 81 (84)
-+||++|+++..+++.+|+++|+|.+|||||||+||++|+++|+|+||||+|||||+++++|||||+|+.
T Consensus 4 ~~~~~~kmeiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~ 73 (115)
T 1xpp_A 4 QRERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK 73 (115)
T ss_dssp -----CCCEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSC
T ss_pred ccccccceEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999875
No 4
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=99.96 E-value=3.2e-30 Score=167.43 Aligned_cols=61 Identities=36% Similarity=0.444 Sum_probs=56.6
Q ss_pred eecCCCcceeEEEEecCCcchHHHHHHHHhcCCceeEEeeeCCCCCCcceEEEEEeccCcc
Q 034762 22 ERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRAELAKHSR 82 (84)
Q Consensus 22 ~~~~~~~n~~~~~i~~EdHTLgNlLr~~Ll~~~~V~fAgY~vpHPl~~~i~l~Iqt~~~~~ 82 (84)
...++.+|+++|+|.||||||||+||++|+++|+|+||||+||||++++++|||||+++.+
T Consensus 4 kvi~k~~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~ 64 (92)
T 2pa8_L 4 RILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSIT 64 (92)
T ss_dssp EEEEEETTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSC
T ss_pred EEEecCCCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCC
Confidence 3344779999999999999999999999999999999999999999999999999998754
No 5
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=96.41 E-value=0.0028 Score=46.19 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=32.6
Q ss_pred eeEEeecCCCcceeEEEEecCCcchHHHHHHHHhcC-C-----ceeEEe
Q 034762 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD-E-----NVLFAG 60 (84)
Q Consensus 18 Ki~~~~~~~~~n~~~~~i~~EdHTLgNlLr~~Ll~~-~-----~V~fAg 60 (84)
+|++... .++.++|.+.|-|+||||+||..|+.. | .|.+.|
T Consensus 2 ~i~i~~~--~~~~~~f~l~g~~~t~~NalRRills~vp~~AI~~V~i~~ 48 (265)
T 2pa8_D 2 SINLLHK--DDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIE 48 (265)
T ss_dssp CEEEEEE--CSSEEEEEEESSCHHHHHHHHHHHHHSCCEEEEEEEEEEE
T ss_pred eEEEEEc--CCCEEEEEEeCCCHHHHHHHHHHHHHcCccceEEEEEEEe
Confidence 4566554 388999999999999999999999874 4 556666
No 6
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=95.36 E-value=0.012 Score=42.77 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=32.3
Q ss_pred eeeEEeecCCCcceeEEEEe----cCCcchHHHHHHHHhcC-CceeEEe
Q 034762 17 KKVSYERDTKIINAASFTIE----REEHTIGNILRMQLHRD-ENVLFAG 60 (84)
Q Consensus 17 ~Ki~~~~~~~~~n~~~~~i~----~EdHTLgNlLr~~Ll~~-~~V~fAg 60 (84)
.+|++... .++.++|.+. |-++||||+||..|+.. |+.-.-+
T Consensus 12 ~~i~i~~~--~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~ 58 (235)
T 1bdf_A 12 RLVDIEQV--SSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTE 58 (235)
T ss_dssp CEEEEEES--SSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred ceEEEEEc--cCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEE
Confidence 44677664 4889999996 99999999999999974 6544433
No 7
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=95.34 E-value=0.0066 Score=46.09 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=28.8
Q ss_pred eeeEEeecCCCcceeEEEEecCCcchHHHHHHHHhcC
Q 034762 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD 53 (84)
Q Consensus 17 ~Ki~~~~~~~~~n~~~~~i~~EdHTLgNlLr~~Ll~~ 53 (84)
.+|++.. ..++.++|.+.|-|+||||.||..|+..
T Consensus 6 p~I~i~~--~~~~~~kF~leG~~~tlaNALRRiLLSe 40 (318)
T 1twf_C 6 PQVKIRE--ASKDNVDFILSNVDLAMANSLRRVMIAE 40 (318)
T ss_dssp SBCCCSC--CCSSEECCEEBSSCHHHHHHHHHHHHHC
T ss_pred CeEEEEE--ecCCEEEEEEEccChhHHHHHHHHHHHc
Confidence 3455555 3488999999999999999999999874
No 8
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=94.95 E-value=0.015 Score=43.97 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=30.3
Q ss_pred ceeeEEeecCCCcceeEEEEecCCcchHHHHHHHHhcC
Q 034762 16 TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD 53 (84)
Q Consensus 16 e~Ki~~~~~~~~~n~~~~~i~~EdHTLgNlLr~~Ll~~ 53 (84)
..+|++... .++.++|.+.|-|.||||.||..|+..
T Consensus 4 ~p~I~i~~~--~~~~~~F~l~g~~~tiaNALRRiLLSe 39 (297)
T 3h0g_C 4 ETHITIRNI--SKNSVDFVLTNTSLAVANSLRRVVLAE 39 (297)
T ss_dssp CCSBCCCCB--CSSEEEEEECSCCHHHHHHHHHHHHSS
T ss_pred CCeEEEEEc--cCCEEEEEEECCChhHHHHHHHHHHHc
Confidence 456666664 479999999999999999999999984
No 9
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=94.02 E-value=0.038 Score=41.84 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=29.3
Q ss_pred eeEEeecCCCcceeEEEEe----cCCcchHHHHHHHHhcC-Cce
Q 034762 18 KVSYERDTKIINAASFTIE----REEHTIGNILRMQLHRD-ENV 56 (84)
Q Consensus 18 Ki~~~~~~~~~n~~~~~i~----~EdHTLgNlLr~~Ll~~-~~V 56 (84)
+|++... .++.++|.+. |-++||||+||..|+.. |+.
T Consensus 10 ~i~i~~~--~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~ 51 (315)
T 2a6h_A 10 VFTVRTQ--GREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGT 51 (315)
T ss_dssp EEEEEEE--TTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEEc--cCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCce
Confidence 3666553 3889999995 99999999999999874 543
No 10
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=93.68 E-value=0.032 Score=42.66 Aligned_cols=39 Identities=31% Similarity=0.279 Sum_probs=30.3
Q ss_pred eeEEeecCCCcceeEEEEe----cCCcchHHHHHHHHhcC-CceeE
Q 034762 18 KVSYERDTKIINAASFTIE----REEHTIGNILRMQLHRD-ENVLF 58 (84)
Q Consensus 18 Ki~~~~~~~~~n~~~~~i~----~EdHTLgNlLr~~Ll~~-~~V~f 58 (84)
++.+... .++.++|.+. |-++||||+||..|+.. |+.-.
T Consensus 13 ~~~v~~~--~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AI 56 (329)
T 3lu0_A 13 LVDIEQV--SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAV 56 (329)
T ss_dssp CCCEEEC--TTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEE
T ss_pred eEEEEEc--CCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEE
Confidence 4444443 4889999999 99999999999999984 54433
No 11
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}
Probab=66.70 E-value=7.7 Score=25.83 Aligned_cols=31 Identities=10% Similarity=0.008 Sum_probs=23.5
Q ss_pred HHHHHHhcCCceeEEeeeCCCCCCcceEEEEE
Q 034762 45 ILRMQLHRDENVLFAGYKLPHPLQYKIIVRAE 76 (84)
Q Consensus 45 lLr~~Ll~~~~V~fAgY~vpHPl~~~i~l~Iq 76 (84)
---.+|.++|+|.|+++.-.-+. +..++|++
T Consensus 53 ~k~~ql~~Np~V~i~~~~~d~~~-~~~~IRi~ 83 (145)
T 3ba3_A 53 PALKVYDQNPDIAFITIPNDGTA-GNPYLRAQ 83 (145)
T ss_dssp THHHHHTTCCEEEEEEEECTTCT-TCCEEEEE
T ss_pred HHHHHHHhCCCEEEEEECCCCCc-cceEEEEE
Confidence 45678999999999999755443 46777775
No 12
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=61.61 E-value=18 Score=22.96 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=28.1
Q ss_pred CCceeeEEeecCCCcceeEEEEecCCcchHHHHHHH
Q 034762 14 EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQ 49 (84)
Q Consensus 14 ~ge~Ki~~~~~~~~~n~~~~~i~~EdHTLgNlLr~~ 49 (84)
+|+|+|++..-.......+|.+.-+..||+.+|...
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~ 39 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESE 39 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHT
T ss_pred cceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHc
Confidence 689998888766666677788888889999998654
No 13
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=39.06 E-value=14 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=6.9
Q ss_pred CcceeEEEEec---CCcchHHHHHHH
Q 034762 27 IINAASFTIER---EEHTIGNILRMQ 49 (84)
Q Consensus 27 ~~n~~~~~i~~---EdHTLgNlLr~~ 49 (84)
..+.+++.+.| -|+|.+|++|..
T Consensus 188 ~S~~~~l~V~g~~~~~~t~~n~~~~~ 213 (218)
T 1uct_A 188 PSNALELVVTDSIHQDYTTQNLILEH 213 (218)
T ss_dssp CCCCEEEEEC----------------
T ss_pred CCCcEEEEEecCCCcCCChhhhhhhh
Confidence 34667788876 589999999875
No 14
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=35.61 E-value=44 Score=20.49 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=29.9
Q ss_pred eeEEEEecCCcchHHHHHHHHhcCCceeEEeeeCCCC
Q 034762 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66 (84)
Q Consensus 30 ~~~~~i~~EdHTLgNlLr~~Ll~~~~V~fAgY~vpHP 66 (84)
.+.+.+.|++--+..++.+.-.+.=.|+..||...|-
T Consensus 66 ~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl~~~~~~~ 102 (106)
T 3dhx_A 66 IMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYVLEHH 102 (106)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEEC--
T ss_pred EEEEEEeCCHHHHHHHHHHHHHCCCEEEEeeeeeecc
Confidence 4567888888888888888888888999999998874
No 15
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=25.55 E-value=49 Score=22.11 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=26.6
Q ss_pred cceeEEEEecCCcchHHHHHHHHhcCCc--eeEEeeeCC
Q 034762 28 INAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLP 64 (84)
Q Consensus 28 ~n~~~~~i~~EdHTLgNlLr~~Ll~~~~--V~fAgY~vp 64 (84)
..-+..+..||-|++|-.+...+++..+ |.+-|..+|
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp 127 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIE 127 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBC
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 4556678899999999888888887764 444554443
No 16
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=24.66 E-value=16 Score=24.77 Aligned_cols=13 Identities=54% Similarity=0.711 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHH
Q 034762 38 EEHTIGNILRMQL 50 (84)
Q Consensus 38 EdHTLgNlLr~~L 50 (84)
-|||++||+|-.|
T Consensus 228 ~~~~~~nl~r~~~ 240 (242)
T 1p6f_A 228 WDHTAQNLLRMGL 240 (242)
T ss_dssp -------------
T ss_pred ccchheeeeEEEe
Confidence 3999999998654
No 17
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.64 E-value=86 Score=21.92 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=30.3
Q ss_pred CcceeEEEEecCCcchHHHHHHHHhcCC--ceeEEeeeCCC
Q 034762 27 IINAASFTIEREEHTIGNILRMQLHRDE--NVLFAGYKLPH 65 (84)
Q Consensus 27 ~~n~~~~~i~~EdHTLgNlLr~~Ll~~~--~V~fAgY~vpH 65 (84)
.+.-+..+..||-|++|-.+...+++.- +|.+-|-.+|.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~ 163 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPA 163 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCS
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 3455677889999999999999888877 45667777653
Done!