BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034767
         (84 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O59682|LCB1_SCHPO Serine palmitoyltransferase 1 OS=Schizosaccharomyces pombe
          (strain 972 / ATCC 24843) GN=lcb1 PE=3 SV=1
          Length = 509

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 8/44 (18%)

Query: 3  PLRFILVFFSAVLAGYFAWRTVRSSP--------EADINSLSDD 38
          PLR  + F   V A Y+  R  R+SP        E +IN L DD
Sbjct: 47 PLRTFIEFLLLVFAAYYVLRKPRTSPDNNYVEFTEKEINELVDD 90


>sp|C7R5S3|BAMB_KANKD Outer membrane protein assembly factor BamB OS=Kangiella koreensis
           (strain DSM 16069 / KCTC 12182 / SW-125) GN=bamB PE=3
           SV=1
          Length = 388

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 60  NGFWVFVDMASGRYLWR 76
           NGF + +D+ +GRYLWR
Sbjct: 252 NGFAIAMDLTNGRYLWR 268


>sp|A6VF45|YIDC_PSEA7 Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain
           PA7) GN=yidC PE=3 SV=1
          Length = 578

 Score = 29.6 bits (65), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 38  DSPNDKTSLKDEDESNFTRSIQNGFWV 64
           DSP  K S KD D+  F  S+Q G WV
Sbjct: 265 DSPYKKISTKDMDKEQFKESVQGG-WV 290


>sp|Q02DE0|YIDC_PSEAB Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain
           UCBPP-PA14) GN=yidC PE=3 SV=1
          Length = 578

 Score = 29.3 bits (64), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 38  DSPNDKTSLKDEDESNFTRSIQNGFWV 64
           DSP  K S KD D+  F  S+Q G WV
Sbjct: 265 DSPYKKISTKDMDKEQFKESVQGG-WV 290


>sp|B7V7A5|YIDC_PSEA8 Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain
           LESB58) GN=yidC PE=3 SV=1
          Length = 578

 Score = 29.3 bits (64), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 38  DSPNDKTSLKDEDESNFTRSIQNGFWV 64
           DSP  K S KD D+  F  S+Q G WV
Sbjct: 265 DSPYKKISTKDMDKEQFKESVQGG-WV 290


>sp|Q9HT06|YIDC_PSEAE Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain
           ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=yidC
           PE=3 SV=1
          Length = 578

 Score = 29.3 bits (64), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 38  DSPNDKTSLKDEDESNFTRSIQNGFWV 64
           DSP  K S KD D+  F  S+Q G WV
Sbjct: 265 DSPYKKISTKDMDKEQFKESVQGG-WV 290


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,745,613
Number of Sequences: 539616
Number of extensions: 1015550
Number of successful extensions: 2953
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2952
Number of HSP's gapped (non-prelim): 8
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)