Query 034767
Match_columns 84
No_of_seqs 34 out of 36
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 06:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06679 DUF1180: Protein of u 84.4 0.94 2E-05 33.3 2.6 22 6-27 99-120 (163)
2 CHL00190 psaM photosystem I su 69.6 6.8 0.00015 22.0 2.7 18 6-23 7-24 (30)
3 TIGR03053 PS_I_psaM photosyste 69.5 6.9 0.00015 21.7 2.7 18 6-23 6-23 (29)
4 PRK11874 petL cytochrome b6-f 68.3 7.5 0.00016 21.9 2.7 20 6-25 9-28 (30)
5 PF07465 PsaM: Photosystem I p 68.3 8 0.00017 21.5 2.7 18 6-23 6-23 (29)
6 PF06522 B12D: NADH-ubiquinone 68.2 6.7 0.00015 24.8 2.8 27 6-32 10-36 (73)
7 PRK11878 psaM photosystem I re 67.7 7.6 0.00017 22.3 2.7 18 6-23 10-27 (34)
8 smart00564 PQQ beta-propeller 60.8 1.8 3.9E-05 22.0 -0.7 18 59-76 14-31 (33)
9 COG3745 CpaB Flp pilus assembl 55.1 16 0.00036 29.3 3.4 28 1-28 1-31 (276)
10 KOG2592 Tumor differentially e 51.3 4.7 0.0001 34.1 -0.2 15 51-65 102-116 (426)
11 PRK03427 cell division protein 46.4 20 0.00043 29.3 2.7 15 1-15 2-16 (333)
12 PF03672 UPF0154: Uncharacteri 46.4 25 0.00054 22.6 2.6 18 6-23 3-20 (64)
13 TIGR01843 type_I_hlyD type I s 46.1 20 0.00044 27.0 2.6 26 3-28 3-28 (423)
14 PF14138 COX16: Cytochrome c o 44.9 14 0.00029 24.1 1.3 23 4-26 1-23 (80)
15 PRK04335 cell division protein 44.2 18 0.0004 29.2 2.2 27 1-27 1-27 (313)
16 PF01011 PQQ: PQQ enzyme repea 42.3 3.6 7.9E-05 22.3 -1.5 19 59-77 8-26 (38)
17 PF02411 MerT: MerT mercuric t 41.6 49 0.0011 22.9 3.8 26 3-28 49-74 (116)
18 PF10136 SpecificRecomb: Site- 41.4 18 0.0004 31.7 1.9 16 7-22 478-493 (643)
19 PF08520 DUF1748: Fungal prote 39.8 21 0.00046 23.0 1.6 20 8-29 11-30 (70)
20 PF10833 DUF2572: Protein of u 35.4 35 0.00075 26.4 2.4 16 6-21 7-22 (221)
21 TIGR02205 septum_zipA cell div 35.3 27 0.00059 27.6 1.9 12 4-15 2-13 (284)
22 TIGR02833 spore_III_AB stage I 33.9 22 0.00049 25.4 1.1 23 6-28 5-27 (170)
23 PRK08307 stage III sporulation 33.2 25 0.00055 25.2 1.3 22 7-28 7-28 (171)
24 PF09548 Spore_III_AB: Stage I 32.5 25 0.00053 24.9 1.1 23 6-28 5-27 (170)
25 PRK10476 multidrug resistance 32.5 36 0.00079 25.9 2.1 21 3-23 13-33 (346)
26 PF10066 DUF2304: Uncharacteri 31.2 62 0.0013 21.6 2.9 26 1-27 1-26 (115)
27 PRK00269 zipA cell division pr 30.7 47 0.001 26.8 2.6 24 4-27 5-31 (293)
28 PF09615 Cas_Csy3: CRISPR-asso 30.2 8.9 0.00019 31.3 -1.6 29 51-79 111-145 (331)
29 PF01222 ERG4_ERG24: Ergostero 29.0 35 0.00075 28.2 1.6 57 6-66 304-360 (432)
30 PF02529 PetG: Cytochrome B6-F 28.4 73 0.0016 18.7 2.5 16 6-21 9-24 (37)
31 PF07543 PGA2: Protein traffic 27.0 38 0.00082 24.2 1.3 14 4-22 18-31 (140)
32 COG4389 Site-specific recombin 26.4 44 0.00095 29.7 1.8 14 7-20 502-515 (677)
33 PF13334 DUF4094: Domain of un 25.9 88 0.0019 20.9 2.8 23 7-29 6-28 (95)
34 PF14851 FAM176: FAM176 family 25.7 70 0.0015 23.4 2.5 18 3-20 19-36 (153)
35 PRK04233 hypothetical protein; 25.3 22 0.00047 25.1 -0.2 16 51-68 113-128 (129)
36 TIGR02566 cas_Csy3 CRISPR-asso 25.2 12 0.00026 30.7 -1.6 27 53-79 117-149 (341)
37 PF13706 PepSY_TM_3: PepSY-ass 24.5 75 0.0016 17.6 2.0 13 6-18 19-31 (37)
38 PF05545 FixQ: Cbb3-type cytoc 24.4 98 0.0021 17.7 2.5 19 6-24 13-31 (49)
39 PF06364 DUF1068: Protein of u 24.1 53 0.0011 25.0 1.7 17 4-20 8-24 (176)
40 PF12046 DUF3529: Protein of u 24.0 59 0.0013 24.4 1.9 19 6-25 113-131 (173)
41 PF12588 PSDC: Phophatidylseri 23.4 46 0.001 23.9 1.2 21 2-22 74-94 (141)
42 PF14004 DUF4227: Protein of u 23.1 95 0.0021 20.1 2.5 24 4-27 7-30 (71)
43 PRK01844 hypothetical protein; 22.9 1E+02 0.0022 20.3 2.7 17 7-23 11-27 (72)
44 PRK00523 hypothetical protein; 22.9 1E+02 0.0022 20.3 2.7 17 7-23 12-28 (72)
45 PF13808 DDE_Tnp_1_assoc: DDE_ 21.9 69 0.0015 20.5 1.7 17 6-22 24-40 (90)
46 PF06092 DUF943: Enterobacteri 21.8 86 0.0019 23.1 2.3 16 10-28 13-28 (157)
47 PF09527 ATPase_gene1: Putativ 21.7 1.3E+02 0.0029 17.3 2.8 20 6-25 36-55 (55)
48 CHL00008 petG cytochrome b6/f 21.7 1E+02 0.0022 18.2 2.2 16 6-21 9-24 (37)
49 PF10229 DUF2246: Uncharacteri 21.2 40 0.00087 26.6 0.6 19 58-76 199-218 (278)
50 PF05620 DUF788: Protein of un 21.2 2.1E+02 0.0045 20.4 4.2 15 11-25 122-136 (170)
51 TIGR01375 soxG sarcosine oxida 20.6 90 0.002 21.3 2.2 25 58-82 126-150 (152)
52 PF11808 DUF3329: Domain of un 20.5 1.1E+02 0.0024 19.7 2.5 8 14-21 36-43 (90)
53 PF11683 DUF3278: Protein of u 20.5 45 0.00098 22.8 0.6 21 7-27 70-90 (129)
54 PRK00665 petG cytochrome b6-f 20.1 1.1E+02 0.0025 17.9 2.2 16 6-21 9-24 (37)
55 PF12270 Cyt_c_ox_IV: Cytochro 20.1 1.8E+02 0.004 21.0 3.7 22 8-29 44-67 (137)
No 1
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=84.43 E-value=0.94 Score=33.33 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 034767 6 FILVFFSAVLAGYFAWRTVRSS 27 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~s~ 27 (84)
.||+.||+.+..||++|.+|..
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5788999999999999999776
No 2
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=69.62 E-value=6.8 Score=22.00 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034767 6 FILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~ 23 (84)
++..++.|.++|++++|-
T Consensus 7 i~iAL~~Al~~~iLA~rL 24 (30)
T CHL00190 7 IFIALFLALTTGILAIRL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788999999999974
No 3
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=69.54 E-value=6.9 Score=21.70 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034767 6 FILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~ 23 (84)
+++.++.|.++|++|+|-
T Consensus 6 i~iaL~~Al~~~iLA~rL 23 (29)
T TIGR03053 6 IFIALVIALIAGILALRL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788999999999974
No 4
>PRK11874 petL cytochrome b6-f complex subunit PetL; Reviewed
Probab=68.29 E-value=7.5 Score=21.87 Aligned_cols=20 Identities=30% Similarity=0.570 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 034767 6 FILVFFSAVLAGYFAWRTVR 25 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~ 25 (84)
++.+|+++.++-||.+|+.+
T Consensus 9 ~l~~~~g~A~gl~fgLrsiK 28 (30)
T PRK11874 9 YLGVFTGIALGLYFGLRAAK 28 (30)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 67789999999999999864
No 5
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=68.27 E-value=8 Score=21.55 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034767 6 FILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~ 23 (84)
++..++.|.++|++++|-
T Consensus 6 i~iAL~~Al~~~iLA~rL 23 (29)
T PF07465_consen 6 IFIALVIALITGILALRL 23 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788999999999973
No 6
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=68.21 E-value=6.7 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccC
Q 034767 6 FILVFFSAVLAGYFAWRTVRSSPEADI 32 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~s~p~~~~ 32 (84)
|+.|-+-+++|+|+..|.+...||.-.
T Consensus 10 ~~~vg~a~~~a~~~~~r~l~~~PdV~~ 36 (73)
T PF06522_consen 10 FVIVGVAVGGATFYLYRLLLTNPDVRW 36 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 456777889999999999999998644
No 7
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=67.70 E-value=7.6 Score=22.33 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034767 6 FILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~ 23 (84)
+++.++.|.++|++|+|-
T Consensus 10 i~iaL~~Al~~giLA~RL 27 (34)
T PRK11878 10 VFVALVVALHAGVLALRL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788999999999984
No 8
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=60.77 E-value=1.8 Score=21.99 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=15.8
Q ss_pred hccceeeEEccchhHHHH
Q 034767 59 QNGFWVFVDMASGRYLWR 76 (84)
Q Consensus 59 ~~GFW~~VDMASGrYLWr 76 (84)
.+|....+|..+|+-+|+
T Consensus 14 ~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 14 TDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCCEEEEEEcccCcEEEE
Confidence 468999999999999885
No 9
>COG3745 CpaB Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]
Probab=55.14 E-value=16 Score=29.29 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=22.5
Q ss_pred CCchh---HHHHHHHHHHHHHHHHHhccCCC
Q 034767 1 MCPLR---FILVFFSAVLAGYFAWRTVRSSP 28 (84)
Q Consensus 1 MCPLR---~ILiflSA~lAGyfa~r~l~s~p 28 (84)
|-|.| .|++..+|.+|||+++..-..+|
T Consensus 1 M~~~rliil~~~~~~ag~ag~la~~~~~a~~ 31 (276)
T COG3745 1 MRPKRLIILIVALAAAGLAGVLAASIWLAPA 31 (276)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 77888 34566789999999998888875
No 10
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=51.33 E-value=4.7 Score=34.10 Aligned_cols=15 Identities=47% Similarity=0.986 Sum_probs=13.3
Q ss_pred chhhhhhhhccceee
Q 034767 51 ESNFTRSIQNGFWVF 65 (84)
Q Consensus 51 ~sk~~~~i~~GFW~~ 65 (84)
.++++.+||||||.|
T Consensus 102 s~D~R~~iqng~W~f 116 (426)
T KOG2592|consen 102 SKDPRAAIQNGFWFF 116 (426)
T ss_pred CCCHHHHHHcCcHHH
Confidence 677899999999986
No 11
>PRK03427 cell division protein ZipA; Provisional
Probab=46.39 E-value=20 Score=29.32 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHHH
Q 034767 1 MCPLRFILVFFSAVL 15 (84)
Q Consensus 1 MCPLR~ILiflSA~l 15 (84)
|==||+|||.+.|+-
T Consensus 2 MqdLrLiLivvGAIA 16 (333)
T PRK03427 2 MQDLRLILIIVGAIA 16 (333)
T ss_pred chhhhhHHHHHHHHH
Confidence 345999999999863
No 12
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=46.39 E-value=25 Score=22.61 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034767 6 FILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~ 23 (84)
.||.++-++++|||+-|-
T Consensus 3 iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577788888899988764
No 13
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=46.09 E-value=20 Score=27.03 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCCC
Q 034767 3 PLRFILVFFSAVLAGYFAWRTVRSSP 28 (84)
Q Consensus 3 PLR~ILiflSA~lAGyfa~r~l~s~p 28 (84)
+.|++++++.+++.++++|-.+-.-|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (423)
T TIGR01843 3 FARLITWLIAGLVVIFFLWAYFAPLD 28 (423)
T ss_pred chhhHHHHHHHHHHHHHHHHhheecc
Confidence 57999999999999999995544433
No 14
>PF14138 COX16: Cytochrome c oxidase assembly protein COX16
Probab=44.91 E-value=14 Score=24.06 Aligned_cols=23 Identities=30% Similarity=0.519 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhccC
Q 034767 4 LRFILVFFSAVLAGYFAWRTVRS 26 (84)
Q Consensus 4 LR~ILiflSA~lAGyfa~r~l~s 26 (84)
|||=|=|++-+++|.|.++.+..
T Consensus 1 l~~GlPf~~liV~GS~gL~~ftq 23 (80)
T PF14138_consen 1 LRFGLPFLLLIVGGSFGLSEFTQ 23 (80)
T ss_pred CcccccHHHHHHHHHHHHHHHHH
Confidence 56778899999999999977654
No 15
>PRK04335 cell division protein ZipA; Provisional
Probab=44.24 E-value=18 Score=29.17 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=18.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhccCC
Q 034767 1 MCPLRFILVFFSAVLAGYFAWRTVRSS 27 (84)
Q Consensus 1 MCPLR~ILiflSA~lAGyfa~r~l~s~ 27 (84)
|==||||||.+-|+.=.-+++-+|+.+
T Consensus 1 MQeLRlvLiivGAlAI~ALL~HGlWts 27 (313)
T PRK04335 1 MQELRFVLIVVGALAIAALLFHGLWTS 27 (313)
T ss_pred CcceeehHHHHHHHHHHHHHHhccccc
Confidence 456999999999875444444444443
No 16
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=42.27 E-value=3.6 Score=22.32 Aligned_cols=19 Identities=26% Similarity=0.746 Sum_probs=15.6
Q ss_pred hccceeeEEccchhHHHHH
Q 034767 59 QNGFWVFVDMASGRYLWRN 77 (84)
Q Consensus 59 ~~GFW~~VDMASGrYLWr~ 77 (84)
.+|.=..+|..+|+.+|+.
T Consensus 8 ~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 8 PDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TTSEEEEEETTTTSEEEEE
T ss_pred CCCEEEEEECCCCCEEEee
Confidence 3677789999999999963
No 17
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=41.64 E-value=49 Score=22.91 Aligned_cols=26 Identities=27% Similarity=0.591 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCCC
Q 034767 3 PLRFILVFFSAVLAGYFAWRTVRSSP 28 (84)
Q Consensus 3 PLR~ILiflSA~lAGyfa~r~l~s~p 28 (84)
|.|-+++.++..+=||--||..+.++
T Consensus 49 pyRp~fi~~tl~~lg~a~~~~yr~~~ 74 (116)
T PF02411_consen 49 PYRPYFIALTLLFLGYAFWRLYRPRK 74 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 89999999999999999898887543
No 18
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=41.38 E-value=18 Score=31.67 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 034767 7 ILVFFSAVLAGYFAWR 22 (84)
Q Consensus 7 ILiflSA~lAGyfa~r 22 (84)
+++|+|+++|||+==+
T Consensus 478 V~LF~SglIaG~~dN~ 493 (643)
T PF10136_consen 478 VWLFLSGLIAGYFDNW 493 (643)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 6899999999997433
No 19
>PF08520 DUF1748: Fungal protein of unknown function (DUF1748); InterPro: IPR013726 This is a family of fungal proteins of unknown function.
Probab=39.77 E-value=21 Score=23.03 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCc
Q 034767 8 LVFFSAVLAGYFAWRTVRSSPE 29 (84)
Q Consensus 8 LiflSA~lAGyfa~r~l~s~p~ 29 (84)
++++|++|||. =|+-.-+|.
T Consensus 11 ~vLiS~~LAGi--rR~TGl~~~ 30 (70)
T PF08520_consen 11 AVLISTFLAGI--RRNTGLTPK 30 (70)
T ss_pred HHHHHHHHHHH--hhccCCccC
Confidence 67889999995 344444443
No 20
>PF10833 DUF2572: Protein of unknown function (DUF2572); InterPro: IPR022543 This bacterial family of proteins has no known function.
Probab=35.35 E-value=35 Score=26.44 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFAW 21 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~ 21 (84)
.+||+||++|+-.|+.
T Consensus 7 ~~LillS~~L~l~~L~ 22 (221)
T PF10833_consen 7 TILILLSGLLTLIMLF 22 (221)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5899999999988875
No 21
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=35.32 E-value=27 Score=27.63 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHH
Q 034767 4 LRFILVFFSAVL 15 (84)
Q Consensus 4 LR~ILiflSA~l 15 (84)
||+|||.+-|+.
T Consensus 2 Lr~iLIIvGaia 13 (284)
T TIGR02205 2 LRIILIIVGILA 13 (284)
T ss_pred ceehHHHHHHHH
Confidence 899999998864
No 22
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=33.95 E-value=22 Score=25.43 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q 034767 6 FILVFFSAVLAGYFAWRTVRSSP 28 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~s~p 28 (84)
-+||++|++..||..-+.++.+|
T Consensus 5 a~LIi~s~~~~G~~~a~~~~~R~ 27 (170)
T TIGR02833 5 ALLIVLSSTWIGFLYANRFKERP 27 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999988888
No 23
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=33.21 E-value=25 Score=25.18 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCC
Q 034767 7 ILVFFSAVLAGYFAWRTVRSSP 28 (84)
Q Consensus 7 ILiflSA~lAGyfa~r~l~s~p 28 (84)
+||++|++..||..-+.++.+|
T Consensus 7 ~LIi~s~~~~G~~~a~~~~~R~ 28 (171)
T PRK08307 7 VLIIAASTWIGFLYAKRYKERP 28 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999988888
No 24
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=32.49 E-value=25 Score=24.93 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q 034767 6 FILVFFSAVLAGYFAWRTVRSSP 28 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~s~p 28 (84)
.+||++|++..||-.-+.++.+|
T Consensus 5 ~~LIi~a~~~~G~~~a~~~~~R~ 27 (170)
T PF09548_consen 5 AILIIAASSGIGFLYARRLKRRV 27 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999988888777
No 25
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=32.47 E-value=36 Score=25.88 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHh
Q 034767 3 PLRFILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 3 PLR~ILiflSA~lAGyfa~r~ 23 (84)
++.++++++.-++++|+.|.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ 33 (346)
T PRK10476 13 LPALAIVALAIVALVFVIWRT 33 (346)
T ss_pred chhHHHHHHHHHHHHHHhecc
Confidence 467889999999999999954
No 26
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=31.25 E-value=62 Score=21.56 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=18.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhccCC
Q 034767 1 MCPLRFILVFFSAVLAGYFAWRTVRSS 27 (84)
Q Consensus 1 MCPLR~ILiflSA~lAGyfa~r~l~s~ 27 (84)
|-++++|++++|..+.++ +.+.+|.+
T Consensus 1 M~~~qii~i~~~v~~~~~-ii~~vr~~ 26 (115)
T PF10066_consen 1 MTILQIILIIIAVLFLLF-IIRLVRKR 26 (115)
T ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 678999999887766555 44455544
No 27
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=30.75 E-value=47 Score=26.83 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHH-HH--HHHhccCC
Q 034767 4 LRFILVFFSAVLAG-YF--AWRTVRSS 27 (84)
Q Consensus 4 LR~ILiflSA~lAG-yf--a~r~l~s~ 27 (84)
||.|||.+-+++-+ ++ -||..|-+
T Consensus 5 l~~~livig~i~i~~il~~~~~r~r~~ 31 (293)
T PRK00269 5 LREWLIVIGIIVIAGILFDGWRRMRGG 31 (293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 79999999987654 44 89987654
No 28
>PF09615 Cas_Csy3: CRISPR-associated protein (Cas_Csy3); InterPro: IPR013399 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.
Probab=30.16 E-value=8.9 Score=31.26 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=19.0
Q ss_pred chhhhhhhhcccee------eEEccchhHHHHHHH
Q 034767 51 ESNFTRSIQNGFWV------FVDMASGRYLWRNLR 79 (84)
Q Consensus 51 ~sk~~~~i~~GFW~------~VDMASGrYLWr~L~ 79 (84)
..-+...++.+.+. ..-.|.||.||||-+
T Consensus 111 ~~~~~~Y~~~~G~~eLA~RYa~NIanGrwLWRNR~ 145 (331)
T PF09615_consen 111 QEFVQGYKEKHGFQELAKRYAKNIANGRWLWRNRV 145 (331)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhcCeeEeeccc
Confidence 33444555555554 346799999999963
No 29
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=29.01 E-value=35 Score=28.15 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhccceeeE
Q 034767 6 FILVFFSAVLAGYFAWRTVRSSPEADINSLSDDSPNDKTSLKDEDESNFTRSIQNGFWVFV 66 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~s~p~~~~~~~~dd~~~~~~s~~~~~~sk~~~~i~~GFW~~V 66 (84)
.++|++ .-++||.+.|+.++|-+..- .+-.++.....+..+.++.++-+-||+|.++
T Consensus 304 ~~~i~~-l~~~gy~i~r~sn~QK~~FR---~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~ 360 (432)
T PF01222_consen 304 AAAILA-LGLVGYYIFRGSNSQKNRFR---RNPKDPKVIHLKYIPTKRGSKLLVSGWWGIA 360 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhchhHHHhc---CCCCCCcccccceeecCCCCeEEEcChhHhh
Confidence 344444 34789999999999865320 0000111111222234445567889999754
No 30
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=28.44 E-value=73 Score=18.74 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFAW 21 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~ 21 (84)
.+|=.++-|+||-|+-
T Consensus 9 iVlGli~vtl~Glfv~ 24 (37)
T PF02529_consen 9 IVLGLIPVTLAGLFVA 24 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4677889999999875
No 31
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=26.97 E-value=38 Score=24.20 Aligned_cols=14 Identities=29% Similarity=0.928 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 034767 4 LRFILVFFSAVLAGYFAWR 22 (84)
Q Consensus 4 LR~ILiflSA~lAGyfa~r 22 (84)
+|+|+ ++.||+++|
T Consensus 18 iRLVi-----IVggYiLlR 31 (140)
T PF07543_consen 18 IRLVI-----IVGGYILLR 31 (140)
T ss_pred hhhhh-----hhhHHHHHH
Confidence 45555 478999998
No 32
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=26.39 E-value=44 Score=29.71 Aligned_cols=14 Identities=36% Similarity=0.940 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 034767 7 ILVFFSAVLAGYFA 20 (84)
Q Consensus 7 ILiflSA~lAGyfa 20 (84)
+++|+|+++||||=
T Consensus 502 ~wLf~SgiiaG~fD 515 (677)
T COG4389 502 LWLFCSGIIAGFFD 515 (677)
T ss_pred HHHHHHHHHHHhhc
Confidence 57899999999984
No 33
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=25.87 E-value=88 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCc
Q 034767 7 ILVFFSAVLAGYFAWRTVRSSPE 29 (84)
Q Consensus 7 ILiflSA~lAGyfa~r~l~s~p~ 29 (84)
+++.+.+.+||.++-.-++..|+
T Consensus 6 l~Lc~~SF~~G~lft~R~W~~pe 28 (95)
T PF13334_consen 6 LLLCIASFCAGMLFTNRMWTVPE 28 (95)
T ss_pred HHHHHHHHHHHHHHhcccccCCc
Confidence 45567888999988887887775
No 34
>PF14851 FAM176: FAM176 family
Probab=25.75 E-value=70 Score=23.41 Aligned_cols=18 Identities=50% Similarity=0.742 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHH
Q 034767 3 PLRFILVFFSAVLAGYFA 20 (84)
Q Consensus 3 PLR~ILiflSA~lAGyfa 20 (84)
|=||-|.|+|+|-+|.++
T Consensus 19 PE~~aLYFv~gVC~GLlL 36 (153)
T PF14851_consen 19 PERFALYFVSGVCAGLLL 36 (153)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 668999999999999764
No 35
>PRK04233 hypothetical protein; Provisional
Probab=25.26 E-value=22 Score=25.13 Aligned_cols=16 Identities=38% Similarity=0.956 Sum_probs=12.1
Q ss_pred chhhhhhhhccceeeEEc
Q 034767 51 ESNFTRSIQNGFWVFVDM 68 (84)
Q Consensus 51 ~sk~~~~i~~GFW~~VDM 68 (84)
.|.|++ ++|-|.+||.
T Consensus 113 ~S~F~r--~~g~W~YvDg 128 (129)
T PRK04233 113 HSRFVR--EDGRWYYLDA 128 (129)
T ss_pred eeeEEE--ECCEEEEecC
Confidence 555555 5899999996
No 36
>TIGR02566 cas_Csy3 CRISPR-associated protein, Csy3 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.
Probab=25.20 E-value=12 Score=30.71 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=17.4
Q ss_pred hhhhhhhcccee------eEEccchhHHHHHHH
Q 034767 53 NFTRSIQNGFWV------FVDMASGRYLWRNLR 79 (84)
Q Consensus 53 k~~~~i~~GFW~------~VDMASGrYLWr~L~ 79 (84)
-+..-++.+.|. ..-.|.||.||||=+
T Consensus 117 ~v~~Y~~~~G~~ELA~RYa~NianGrwLWRNr~ 149 (341)
T TIGR02566 117 TVKLYIEEQGFEELARRYAENIANGRWLWRNRV 149 (341)
T ss_pred HHHHHHHccCHHHHHHHHHHHhhcCeeEeeccc
Confidence 344445555543 446789999999843
No 37
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=24.46 E-value=75 Score=17.55 Aligned_cols=13 Identities=8% Similarity=0.562 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGY 18 (84)
Q Consensus 6 ~ILiflSA~lAGy 18 (84)
++++++|++++-|
T Consensus 19 l~~~~~tG~~~~f 31 (37)
T PF13706_consen 19 LFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHhHHHHH
Confidence 4667777777655
No 38
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.35 E-value=98 Score=17.75 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 034767 6 FILVFFSAVLAGYFAWRTV 24 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l 24 (84)
+.+|++-++..|+.+|--.
T Consensus 13 ~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4577888888898888543
No 39
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=24.09 E-value=53 Score=24.99 Aligned_cols=17 Identities=47% Similarity=0.884 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 034767 4 LRFILVFFSAVLAGYFA 20 (84)
Q Consensus 4 LR~ILiflSA~lAGyfa 20 (84)
+|++|+.+.-.+|||.+
T Consensus 8 lr~~l~llal~~a~yiv 24 (176)
T PF06364_consen 8 LRVVLVLLALCLAGYIV 24 (176)
T ss_pred HHHHHHHHHHHHHhhee
Confidence 79999999999999976
No 40
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=23.97 E-value=59 Score=24.42 Aligned_cols=19 Identities=42% Similarity=0.852 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 034767 6 FILVFFSAVLAGYFAWRTVR 25 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~ 25 (84)
+.|+.|| -+||.|-||.-.
T Consensus 113 ~~L~lLs-PlAG~~Yw~kA~ 131 (173)
T PF12046_consen 113 LLLVLLS-PLAGIFYWQKAG 131 (173)
T ss_pred HHHHHHh-hhhhhhhhhcCC
Confidence 5677777 899999998653
No 41
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=23.37 E-value=46 Score=23.88 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 034767 2 CPLRFILVFFSAVLAGYFAWR 22 (84)
Q Consensus 2 CPLR~ILiflSA~lAGyfa~r 22 (84)
||+=.||.-..+|-|||.+.+
T Consensus 74 ~P~naiLdwpM~T~sG~a~F~ 94 (141)
T PF12588_consen 74 FPMNAILDWPMGTPSGYAFFL 94 (141)
T ss_pred cChHHHHHhhccChHHHHHHc
Confidence 899999999999999998754
No 42
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=23.11 E-value=95 Score=20.11 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCC
Q 034767 4 LRFILVFFSAVLAGYFAWRTVRSS 27 (84)
Q Consensus 4 LR~ILiflSA~lAGyfa~r~l~s~ 27 (84)
+||+++|..-|+.=|.++.-++..
T Consensus 7 ik~~~LF~~~T~lfYy~~~w~~~~ 30 (71)
T PF14004_consen 7 IKFFLLFTGCTLLFYYAILWVSDE 30 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998777654
No 43
>PRK01844 hypothetical protein; Provisional
Probab=22.92 E-value=1e+02 Score=20.28 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034767 7 ILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 7 ILiflSA~lAGyfa~r~ 23 (84)
|+-++-+++.|||.-|.
T Consensus 11 I~~li~G~~~Gff~ark 27 (72)
T PRK01844 11 VVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44466677788887654
No 44
>PRK00523 hypothetical protein; Provisional
Probab=22.91 E-value=1e+02 Score=20.27 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034767 7 ILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 7 ILiflSA~lAGyfa~r~ 23 (84)
|+.++-+.+.|||.-|.
T Consensus 12 i~~li~G~~~Gffiark 28 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566777888887654
No 45
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=21.90 E-value=69 Score=20.48 Aligned_cols=17 Identities=41% Similarity=0.802 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFAWR 22 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r 22 (84)
+++|.+.|+|+|.==|+
T Consensus 24 iL~i~~~a~l~G~~~~~ 40 (90)
T PF13808_consen 24 ILLIALCAVLCGADSWR 40 (90)
T ss_pred HHHHHHHHHHHccccHH
Confidence 45678899999865443
No 46
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=21.79 E-value=86 Score=23.08 Aligned_cols=16 Identities=44% Similarity=0.922 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 034767 10 FFSAVLAGYFAWRTVRSSP 28 (84)
Q Consensus 10 flSA~lAGyfa~r~l~s~p 28 (84)
|+-|.++ |++|.. .+|
T Consensus 13 ~l~~~~~-y~~W~~--~rp 28 (157)
T PF06092_consen 13 FLLACIL-YFLWLT--LRP 28 (157)
T ss_pred HHHHHHH-Hhhhhc--cCC
Confidence 4434444 999944 445
No 47
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=21.71 E-value=1.3e+02 Score=17.31 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 034767 6 FILVFFSAVLAGYFAWRTVR 25 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~ 25 (84)
++.+++..+.+.|-+||.+|
T Consensus 36 ~~g~llG~~~g~~~~~~~~k 55 (55)
T PF09527_consen 36 LIGLLLGIAAGFYNVYRLVK 55 (55)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 35566677777777776553
No 48
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=21.69 E-value=1e+02 Score=18.18 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFAW 21 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~ 21 (84)
++|=++.-||||.|+-
T Consensus 9 iVLGlipvTl~Glfva 24 (37)
T CHL00008 9 IVLGLIPITLAGLFVT 24 (37)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4566778899999875
No 49
>PF10229 DUF2246: Uncharacterized conserved protein (DUF2246); InterPro: IPR019362 This entry represents conserved proteins found in the metazoa but absent from fungi. They are all approximately 300 residues in length and have no known function.
Probab=21.24 E-value=40 Score=26.65 Aligned_cols=19 Identities=37% Similarity=0.835 Sum_probs=16.5
Q ss_pred hhcccee-eEEccchhHHHH
Q 034767 58 IQNGFWV-FVDMASGRYLWR 76 (84)
Q Consensus 58 i~~GFW~-~VDMASGrYLWr 76 (84)
.+.|+|. |||-.||+.+..
T Consensus 199 ~~~GYWADFIDP~SG~p~~~ 218 (278)
T PF10229_consen 199 RSQGYWADFIDPFSGRPYFG 218 (278)
T ss_pred HhCCEeeeeecCCCCccccC
Confidence 5789997 999999998865
No 50
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=21.15 E-value=2.1e+02 Score=20.36 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcc
Q 034767 11 FSAVLAGYFAWRTVR 25 (84)
Q Consensus 11 lSA~lAGyfa~r~l~ 25 (84)
+=..-|+|-+|..++
T Consensus 122 vIP~ya~Ykl~~~i~ 136 (170)
T PF05620_consen 122 VIPGYAIYKLWGLIK 136 (170)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345668899999884
No 51
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=20.58 E-value=90 Score=21.29 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.9
Q ss_pred hhccceeeEEccchhHHHHHHHhhh
Q 034767 58 IQNGFWVFVDMASGRYLWRNLREIK 82 (84)
Q Consensus 58 i~~GFW~~VDMASGrYLWr~L~~~~ 82 (84)
=++||=.+|.-..+.|||+.|...-
T Consensus 126 GE~GfEi~v~~s~a~~lw~~L~~ag 150 (152)
T TIGR01375 126 GEDTFEIIVRRSFAESLWHWLVDAS 150 (152)
T ss_pred CCCeEEEEEEhhHHHHHHHHHHHHh
Confidence 3789999999999999999998643
No 52
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=20.50 E-value=1.1e+02 Score=19.65 Aligned_cols=8 Identities=38% Similarity=0.700 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 034767 14 VLAGYFAW 21 (84)
Q Consensus 14 ~lAGyfa~ 21 (84)
.+.+|.+|
T Consensus 36 ~l~~~l~w 43 (90)
T PF11808_consen 36 GLLLYLFW 43 (90)
T ss_pred HHHHHHHH
Confidence 33444444
No 53
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=20.46 E-value=45 Score=22.77 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 034767 7 ILVFFSAVLAGYFAWRTVRSS 27 (84)
Q Consensus 7 ILiflSA~lAGyfa~r~l~s~ 27 (84)
+++++.-.++||..+.+-+..
T Consensus 70 ~~~~~~~~~~~yi~~~~~~~~ 90 (129)
T PF11683_consen 70 NIFFIIFIVSGYITFATRKLH 90 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 345556677888888776554
No 54
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=20.12 E-value=1.1e+02 Score=17.94 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFAW 21 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~ 21 (84)
++|=++.-||||.|+-
T Consensus 9 iVLGlipiTl~Glfva 24 (37)
T PRK00665 9 IVLGLIPVTLAGLFVA 24 (37)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4566677899999875
No 55
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.10 E-value=1.8e+02 Score=20.97 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhccC--CCc
Q 034767 8 LVFFSAVLAGYFAWRTVRS--SPE 29 (84)
Q Consensus 8 LiflSA~lAGyfa~r~l~s--~p~ 29 (84)
...++..+++||....=|- +||
T Consensus 44 s~~l~~mig~yl~~~~rr~~~rPE 67 (137)
T PF12270_consen 44 SGGLALMIGFYLRFTARRIGPRPE 67 (137)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCc
Confidence 3456777788876644443 354
Done!