Query 034767
Match_columns 84
No_of_seqs 34 out of 36
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 09:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_M Photosystem 1 reaction 71.0 4 0.00014 22.3 2.7 18 6-23 8-25 (31)
2 1q90_G Cytochrome B6F complex 27.6 49 0.0017 18.7 2.5 16 6-21 9-24 (37)
3 2zxe_B Na+,K+-ATPase beta subu 24.0 45 0.0015 25.4 2.5 13 10-22 42-54 (305)
4 2gag_C Heterotetrameric sarcos 22.6 51 0.0017 22.9 2.4 23 59-81 170-192 (210)
5 1x31_C Sarcosine oxidase gamma 19.1 60 0.0021 22.4 2.1 24 59-82 168-191 (206)
6 1vf5_G Protein PET G; photosyn 18.3 61 0.0021 18.2 1.6 17 6-22 9-25 (37)
7 2zt9_E Cytochrome B6-F complex 17.5 1.4E+02 0.0047 16.1 2.9 18 8-25 12-29 (31)
8 4gak_A Acyl-ACP thioesterase; 15.2 44 0.0015 23.2 0.6 15 59-73 109-123 (250)
9 1v54_D Cytochrome C oxidase su 12.2 1.7E+02 0.0059 20.3 2.9 22 6-27 84-105 (147)
10 2be1_A Serine/threonine-protei 12.1 27 0.00093 26.3 -1.3 22 56-77 116-137 (339)
No 1
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=70.97 E-value=4 Score=22.25 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034767 6 FILVFFSAVLAGYFAWRT 23 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~ 23 (84)
++..++.|.++|++|+|-
T Consensus 8 i~iAL~~Al~~~iLA~rL 25 (31)
T 1jb0_M 8 VYVALVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788999999999973
No 2
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=27.62 E-value=49 Score=18.66 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFAW 21 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~ 21 (84)
++|=.+.-|+||.|+-
T Consensus 9 IVlGlipvtlaGLfv~ 24 (37)
T 1q90_G 9 IVLGLVPVTIAGLFVT 24 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4666788899999875
No 3
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=24.00 E-value=45 Score=25.43 Aligned_cols=13 Identities=38% Similarity=0.536 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 034767 10 FFSAVLAGYFAWR 22 (84)
Q Consensus 10 flSA~lAGyfa~r 22 (84)
+|-++|||+|+..
T Consensus 42 iFY~~La~lF~~~ 54 (305)
T 2zxe_B 42 IFYGCLAGIFIGT 54 (305)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4788999998765
No 4
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=22.62 E-value=51 Score=22.93 Aligned_cols=23 Identities=4% Similarity=-0.009 Sum_probs=21.1
Q ss_pred hccceeeEEccchhHHHHHHHhh
Q 034767 59 QNGFWVFVDMASGRYLWRNLREI 81 (84)
Q Consensus 59 ~~GFW~~VDMASGrYLWr~L~~~ 81 (84)
++||=.+|.-..+.|||+.|.+.
T Consensus 170 EdGfEI~v~~~~A~~lw~~Ll~a 192 (210)
T 2gag_C 170 EQAWRIMPRASFTEHTVHWLVDA 192 (210)
T ss_dssp TTEEEEEEBGGGHHHHHHHHHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHH
Confidence 78999999999999999999764
No 5
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=19.06 E-value=60 Score=22.43 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=21.8
Q ss_pred hccceeeEEccchhHHHHHHHhhh
Q 034767 59 QNGFWVFVDMASGRYLWRNLREIK 82 (84)
Q Consensus 59 ~~GFW~~VDMASGrYLWr~L~~~~ 82 (84)
++||=.+|.-..+.|||+.|.+..
T Consensus 168 EdGfEI~v~~~~A~~lw~~L~~ag 191 (206)
T 1x31_C 168 EQSWRILPRASFTEHTVHWLIDAM 191 (206)
T ss_dssp TTEEEEECBGGGHHHHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHHHHHH
Confidence 899999999999999999998643
No 6
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=18.31 E-value=61 Score=18.24 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFAWR 22 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r 22 (84)
++|=.+.-||||.|+--
T Consensus 9 IVlGlipvtl~GLfv~A 25 (37)
T 1vf5_G 9 LVLGLVFATLGGLFYAA 25 (37)
T ss_dssp CHHHHHHHHHHHHTHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 35667888999998753
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=17.50 E-value=1.4e+02 Score=16.07 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 034767 8 LVFFSAVLAGYFAWRTVR 25 (84)
Q Consensus 8 LiflSA~lAGyfa~r~l~ 25 (84)
.+|+.=.+.-||-+|+.+
T Consensus 12 ~~~~~iA~GL~fGLrsiK 29 (31)
T 2zt9_E 12 ALFTGIAAGLLFGLRSAK 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444455567776643
No 8
>4gak_A Acyl-ACP thioesterase; MCSG, PSI-biology, structural genomics, midwest center for S genomics, hydrolase; HET: MSE; 1.90A {Spirosoma linguale}
Probab=15.23 E-value=44 Score=23.15 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=12.5
Q ss_pred hccceeeEEccchhH
Q 034767 59 QNGFWVFVDMASGRY 73 (84)
Q Consensus 59 ~~GFW~~VDMASGrY 73 (84)
....|+++|+.++|+
T Consensus 109 a~s~wv~iD~~trrp 123 (250)
T 4gak_A 109 ARSTWLVFSMEKRSM 123 (250)
T ss_dssp EEEEEEEEETTTTEE
T ss_pred EEEEEEeeccccCCC
Confidence 455899999999984
No 9
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=12.21 E-value=1.7e+02 Score=20.27 Aligned_cols=22 Identities=5% Similarity=-0.148 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 034767 6 FILVFFSAVLAGYFAWRTVRSS 27 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~r~l~s~ 27 (84)
.+++|++++++-|+..|..-..
T Consensus 84 ~v~~~i~~s~~~f~~~r~~v~~ 105 (147)
T 1v54_D 84 AAMFFIGFTALLLIWEKHYVYG 105 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 4678889998888888887543
No 10
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=12.13 E-value=27 Score=26.31 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=18.2
Q ss_pred hhhhccceeeEEccchhHHHHH
Q 034767 56 RSIQNGFWVFVDMASGRYLWRN 77 (84)
Q Consensus 56 ~~i~~GFW~~VDMASGrYLWr~ 77 (84)
..-++|-+..+|+.||+-+|..
T Consensus 116 ~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 116 TGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp ECEEEEEEEEEETTTCCEEEEE
T ss_pred EEecCCEEEEEECCCCcEEEEE
Confidence 4456788999999999999964
Done!