Query 034767
Match_columns 84
No_of_seqs 34 out of 36
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 09:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034767.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034767hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmec1 f.23.9.1 (C:2-34) Bact 43.2 9.3 0.00068 19.8 2.5 15 6-20 17-31 (33)
2 d2essa1 d.38.1.8 (A:1-149) Acy 28.2 7.8 0.00057 23.3 0.6 15 59-73 109-123 (149)
3 d1q90g_ f.23.26.1 (G:) PetG su 26.6 26 0.0019 17.7 2.5 16 6-21 9-24 (30)
4 d1kqfb2 f.23.22.1 (B:246-290) 25.7 33 0.0024 18.5 3.0 22 7-30 17-38 (45)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 20.9 37 0.0027 16.6 2.3 14 7-20 2-15 (27)
6 d2i9wa1 d.17.4.30 (A:46-158) H 18.4 13 0.00093 22.9 0.2 18 51-68 89-110 (113)
7 d2owna1 d.38.1.8 (A:3-149) Put 15.7 25 0.0018 20.3 1.0 15 59-73 110-124 (147)
8 d2zjrg1 c.21.1.1 (G:30-171) Ri 15.5 26 0.0019 22.3 1.2 15 62-77 11-25 (142)
9 d1sfka_ a.190.1.1 (A:) Flavivi 15.0 30 0.0022 20.5 1.3 9 3-11 19-27 (73)
10 d1pmma_ c.67.1.6 (A:) Glutamat 14.0 36 0.0026 24.1 1.7 19 53-71 227-245 (450)
No 1
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=43.22 E-value=9.3 Score=19.76 Aligned_cols=15 Identities=53% Similarity=0.782 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFA 20 (84)
Q Consensus 6 ~ILiflSA~lAGyfa 20 (84)
.||||-=.++|-||+
T Consensus 17 ~ilvfw~gv~avf~a 31 (33)
T d1xmec1 17 TILVFWLGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 588999999999987
No 2
>d2essa1 d.38.1.8 (A:1-149) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=28.19 E-value=7.8 Score=23.26 Aligned_cols=15 Identities=7% Similarity=0.543 Sum_probs=12.5
Q ss_pred hccceeeEEccchhH
Q 034767 59 QNGFWVFVDMASGRY 73 (84)
Q Consensus 59 ~~GFW~~VDMASGrY 73 (84)
..--|++||+.+||.
T Consensus 109 a~~~~v~id~~t~kp 123 (149)
T d2essa1 109 ARSVWAMINLNTRKP 123 (149)
T ss_dssp EEEEEEEEETTTCCB
T ss_pred EEEEEEEEECCCCCc
Confidence 345899999999985
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.58 E-value=26 Score=17.66 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 034767 6 FILVFFSAVLAGYFAW 21 (84)
Q Consensus 6 ~ILiflSA~lAGyfa~ 21 (84)
++|=.+.-||||.|+-
T Consensus 9 ivlGlipiTl~Glfv~ 24 (30)
T d1q90g_ 9 IVLGLVPVTIAGLFVT 24 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4566778899999874
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=25.71 E-value=33 Score=18.53 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcc
Q 034767 7 ILVFFSAVLAGYFAWRTVRSSPEA 30 (84)
Q Consensus 7 ILiflSA~lAGyfa~r~l~s~p~~ 30 (84)
.+.|..+.+||+|=. ++-.|+.
T Consensus 17 ~~~~~~~~~~~~fHY--v~vGPn~ 38 (45)
T d1kqfb2 17 AAGFIATFAGLIFHY--IGIGPNK 38 (45)
T ss_dssp HHHHHHHHHHHHHHH--HHHCCBC
T ss_pred HHHHHHHHHHHHHhh--heeCCCc
Confidence 356778888999887 6667764
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.91 E-value=37 Score=16.63 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 034767 7 ILVFFSAVLAGYFA 20 (84)
Q Consensus 7 ILiflSA~lAGyfa 20 (84)
+|=.+-+||||.|-
T Consensus 2 vlgli~~tl~glf~ 15 (27)
T d2e74g1 2 VLGLVFATLGGLFY 15 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 44556689999764
No 6
>d2i9wa1 d.17.4.30 (A:46-158) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=18.35 E-value=13 Score=22.87 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=14.5
Q ss_pred chhhhh----hhhccceeeEEc
Q 034767 51 ESNFTR----SIQNGFWVFVDM 68 (84)
Q Consensus 51 ~sk~~~----~i~~GFW~~VDM 68 (84)
.|.|.+ ..++|-|.+||+
T Consensus 89 ~S~F~r~~~~~~edG~W~Y~DG 110 (113)
T d2i9wa1 89 LSTFVKIKNKANSDASWYFLDP 110 (113)
T ss_dssp EEEEEEEECSSSSCEEEEECCS
T ss_pred eeEEEeccCCCCcCCeEEEECC
Confidence 677766 468999999996
No 7
>d2owna1 d.38.1.8 (A:3-149) Putative oleoyl-ACP thioesterase LP0708 {Lactobacillus plantarum [TaxId: 1590]}
Probab=15.72 E-value=25 Score=20.29 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=12.1
Q ss_pred hccceeeEEccchhH
Q 034767 59 QNGFWVFVDMASGRY 73 (84)
Q Consensus 59 ~~GFW~~VDMASGrY 73 (84)
..--|++||+.+||.
T Consensus 110 ~~~~~v~id~~~rr~ 124 (147)
T d2owna1 110 ITSIWVMMSQTTRRI 124 (147)
T ss_dssp EEEEEEEEETTTCSE
T ss_pred EEEEEEEEECCCCcC
Confidence 355899999999974
No 8
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]}
Probab=15.52 E-value=26 Score=22.32 Aligned_cols=15 Identities=60% Similarity=0.678 Sum_probs=12.6
Q ss_pred ceeeEEccchhHHHHH
Q 034767 62 FWVFVDMASGRYLWRN 77 (84)
Q Consensus 62 FW~~VDMASGrYLWr~ 77 (84)
-|..|| |+|.-|-|-
T Consensus 11 ~W~viD-A~~~~lGRl 25 (142)
T d2zjrg1 11 NWVVVD-ASGVPLGRL 25 (142)
T ss_dssp CEEEEE-CTTSBHHHH
T ss_pred cEEEEE-CCCCchHHH
Confidence 399999 899888774
No 9
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=15.03 E-value=30 Score=20.51 Aligned_cols=9 Identities=44% Similarity=1.080 Sum_probs=7.2
Q ss_pred chhHHHHHH
Q 034767 3 PLRFILVFF 11 (84)
Q Consensus 3 PLR~ILifl 11 (84)
|+|+||-++
T Consensus 19 P~R~vLA~l 27 (73)
T d1sfka_ 19 PTRFVLALL 27 (73)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 899998654
No 10
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}
Probab=13.95 E-value=36 Score=24.15 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=0.0
Q ss_pred hhhhhhhccceeeEEccch
Q 034767 53 NFTRSIQNGFWVFVDMASG 71 (84)
Q Consensus 53 k~~~~i~~GFW~~VDMASG 71 (84)
....+-+-|.|+.||.|+|
T Consensus 227 ~~~~a~~~~i~lHVDAA~g 245 (450)
T d1pmma_ 227 KFQADTGIDIDMHIDAASG 245 (450)
T ss_dssp HHHHHHCCCCCEEEECTTG
T ss_pred HHHHHhccCcEEEeehhhc
Done!