BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034768
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80543|Y1280_ARATH Putative methyltransferase At1g22800 OS=Arabidopsis thaliana
GN=At1g22800 PE=2 SV=2
Length = 355
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/54 (83%), Positives = 51/54 (94%)
Query: 16 REVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
+E+RIACT+A MEREGGISPR+SPLAQVRDAGNLLTRAGF+LP VDVD+Y VKY
Sbjct: 211 KELRIACTLAHMEREGGISPRLSPLAQVRDAGNLLTRAGFSLPGVDVDEYVVKY 264
>sp|Q54JW0|NDUF5_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Dictyostelium discoideum GN=ndufaf5 PE=3 SV=1
Length = 436
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNSGNLFI 76
E++ + +A++EREGG SP VSP ++ D GN+L++ +TLP+VD ++ T+ Y+ N+F+
Sbjct: 202 ELKDSLYLAEIEREGGFSPHVSPFTKISDIGNILSKNRYTLPTVDTEKITINYD--NMFV 259
Query: 77 L 77
L
Sbjct: 260 L 260
>sp|A3KP37|NDUF5_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Danio rerio GN=ndufaf5 PE=2 SV=1
Length = 321
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
E+R + +A++EREGG +P +SP V D GNLL +AGF + +VD+D+ V Y
Sbjct: 176 ELRCSLQLAELEREGGFAPHISPYTAVTDLGNLLGQAGFNMLTVDIDEVQVNY 228
>sp|A2APY7|NDUF5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Mus musculus GN=Ndufaf5 PE=2 SV=1
Length = 343
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
E+R + +A+ EREGG SP +SP V D G+LL RAGF +VD D+ V Y
Sbjct: 196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248
>sp|Q5TEU4|NDUF5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Homo sapiens GN=NDUFAF5 PE=1 SV=1
Length = 345
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
E+R + +A+ EREGG SP +SP V D G+LL RAGF +VD D+ V Y
Sbjct: 196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248
>sp|B2GV71|NDUF5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Rattus norvegicus GN=Ndufaf5 PE=2 SV=1
Length = 343
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
E+R + +A+ EREGG SP +SP V D G+LL RAGF +VD D+ V Y
Sbjct: 196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248
>sp|Q5RBS1|NDUF5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
5 OS=Pongo abelii GN=NDUFAF5 PE=2 SV=1
Length = 345
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 17 EVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKY 69
E+R + +A+ EREGG SP +SP V D G+LL RAGF +VD D+ V Y
Sbjct: 196 ELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNY 248
>sp|E4QJB8|BIOC_METS6 Malonyl-CoA O-methyltransferase BioC OS=Methylovorus sp. (strain
MP688) GN=bioC PE=3 SV=1
Length = 296
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 7 FSNLTVLMTREVRIACTVAQMEREGGISPRVSPLAQVRDAGNLLTRAGFTLPSVDVDQYT 66
FS L +E+R A R+ VS + D G+ L RAGF P +DV+ +
Sbjct: 155 FSTLGPDTLKELRAAT------RQDNTHVTVSRFIDMHDIGDALVRAGFNAPVLDVEYFE 208
Query: 67 VKYN 70
+ Y+
Sbjct: 209 LTYD 212
>sp|Q6DFN5|RSPH9_XENTR Radial spoke head protein 9 homolog OS=Xenopus tropicalis GN=rsph9
PE=2 SV=1
Length = 277
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 10 LTVLMTREVRIACTVAQMEREGGISPR----VSPLAQV 43
LT + EVR+ T+A ++RE ++PR +PL QV
Sbjct: 131 LTTHIKEEVRLTGTIAMIDREAAVAPRGAYIRNPLGQV 168
>sp|Q83E64|BIOC1_COXBU Malonyl-CoA O-methyltransferase BioC 1 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=bioC1 PE=3 SV=1
Length = 282
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 37 VSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYNS 71
V P + D G++LT+ FT P +D ++ V Y+S
Sbjct: 163 VHPFYDMHDIGDMLTQLRFTDPVMDTERLIVHYSS 197
>sp|C1D5S5|BIOC_LARHH Malonyl-CoA O-methyltransferase BioC OS=Laribacter hongkongensis
(strain HLHK9) GN=bioC PE=3 SV=1
Length = 297
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 37 VSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYN 70
V+ + D G+ L RAGF P +DV++ + Y+
Sbjct: 180 VNQFIDMHDMGDALVRAGFATPVMDVERIVLTYD 213
>sp|Q2Y9Y6|BIOC_NITMU Malonyl-CoA O-methyltransferase BioC OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=bioC PE=3 SV=1
Length = 307
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 37 VSPLAQVRDAGNLLTRAGFTLPSVDVDQYTVKYN 70
V+ A + D G++L +GF P +D++ T+ Y+
Sbjct: 195 VNRFADMHDIGDMLVHSGFATPVMDMEYITLTYD 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,336,744
Number of Sequences: 539616
Number of extensions: 937646
Number of successful extensions: 2462
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2451
Number of HSP's gapped (non-prelim): 12
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)