BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034773
         (84 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
          Length = 527

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 25  SKSYSFNGPTGKADVL-----ASSGNPESKRRKRVAAY 57
           S   +  GP G A+++      +S NPE  RRK +  Y
Sbjct: 437 SAEIAVXGPEGAANIIFKREIEASSNPEETRRKLIEEY 474


>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
          Neurospora Crassa
 pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
          Neurospora Crassa
 pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
          Neurospora Crassa
 pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
          Neurospora Crassa
          Length = 379

 Score = 25.0 bits (53), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 38 DVLASSGNPESKRRKRVAAYNMYT 61
          D+L+   +PES   K+V A N YT
Sbjct: 23 DILSKRYHPESPAMKKVLAINRYT 46


>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
          Synthase, Oras
 pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
          Synthase, Oras
 pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide
          Synthase From Neurospora Crassa
 pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide
          Synthase From Neurospora Crassa
 pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide
          Synthase From Neurospora Crassa
 pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide
          Synthase From Neurospora Crassa
          Length = 379

 Score = 25.0 bits (53), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 38 DVLASSGNPESKRRKRVAAYNMYT 61
          D+L+   +PES   K+V A N YT
Sbjct: 23 DILSKRYHPESPAMKKVLAINRYT 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.126    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,626,005
Number of Sequences: 62578
Number of extensions: 90575
Number of successful extensions: 138
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 5
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)