Query 034773
Match_columns 84
No_of_seqs 88 out of 90
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 06:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12023 DUF3511: Domain of un 100.0 3.7E-30 8.1E-35 158.3 0.9 44 41-84 1-44 (47)
2 PF07933 DUF1681: Protein of u 30.1 6.8 0.00015 28.9 -2.1 14 18-31 102-115 (160)
3 PF15178 TOM_sub5: Mitochondri 24.0 47 0.001 21.0 1.2 10 44-53 11-21 (51)
4 KOG2500 Uncharacterized conser 19.5 41 0.00089 27.0 0.3 14 18-31 106-119 (253)
5 KOG4742 Predicted chitinase [G 19.1 37 0.0008 27.4 -0.0 25 26-50 182-207 (286)
6 PF07849 DUF1641: Protein of u 18.7 52 0.0011 18.9 0.6 10 42-51 19-28 (42)
7 PF15625 CC2D2AN-C2: CC2D2A N- 18.1 64 0.0014 22.7 1.0 16 45-60 25-40 (168)
8 PF02009 Rifin_STEVOR: Rifin/s 15.0 72 0.0016 25.4 0.7 8 43-50 32-39 (299)
9 cd07402 MPP_GpdQ Enterobacter 14.6 99 0.0022 21.3 1.2 24 42-65 215-239 (240)
10 PF13243 Prenyltrans_1: Prenyl 14.4 38 0.00083 20.7 -0.8 19 63-81 41-59 (109)
No 1
>PF12023 DUF3511: Domain of unknown function (DUF3511); InterPro: IPR021899 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important.
Probab=99.95 E-value=3.7e-30 Score=158.26 Aligned_cols=44 Identities=55% Similarity=0.904 Sum_probs=42.3
Q ss_pred cCCCChhhhhhhhhceeeeeeecchhhhhhhccceehhccccCC
Q 034773 41 ASSGNPESKRRKRVAAYNMYTMEGKLKSSLRNSFKWIKNKFTDD 84 (84)
Q Consensus 41 ~~~~dpE~kRkkRVA~Yk~Y~vEGKvK~S~R~sfrWiK~k~~~~ 84 (84)
|+++|||||||||||+||+|+||||||+|||+||||||++|+++
T Consensus 1 w~~~dpE~kRkkRVA~Yk~y~vEGKvK~S~R~sfrWiK~k~s~i 44 (47)
T PF12023_consen 1 WGFNDPEMKRKKRVASYKVYAVEGKVKGSLRKSFRWIKNKCSRI 44 (47)
T ss_pred CCCCCHHHHHHHHHHhhheeeeehHHHHHHHhhhHHHHHHhhHh
Confidence 67899999999999999999999999999999999999999975
No 2
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=30.13 E-value=6.8 Score=28.91 Aligned_cols=14 Identities=43% Similarity=0.990 Sum_probs=11.0
Q ss_pred ccCccccccceecc
Q 034773 18 QFGFEDRSKSYSFN 31 (84)
Q Consensus 18 ~~g~~~~s~sy~fn 31 (84)
+.||+||+.+++||
T Consensus 102 GiGF~eRsdAFDF~ 115 (160)
T PF07933_consen 102 GIGFRERSDAFDFN 115 (160)
T ss_dssp EEE-S-HHHHHHHH
T ss_pred EEeeccccccccHH
Confidence 47999999999998
No 3
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=24.01 E-value=47 Score=20.98 Aligned_cols=10 Identities=50% Similarity=0.747 Sum_probs=6.9
Q ss_pred CCh-hhhhhhh
Q 034773 44 GNP-ESKRRKR 53 (84)
Q Consensus 44 ~dp-E~kRkkR 53 (84)
-|| |+|||-|
T Consensus 11 ~DPeE~k~kmR 21 (51)
T PF15178_consen 11 MDPEEMKRKMR 21 (51)
T ss_pred CCHHHHHHHHH
Confidence 477 6777755
No 4
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=19.52 E-value=41 Score=27.02 Aligned_cols=14 Identities=36% Similarity=0.942 Sum_probs=13.1
Q ss_pred ccCccccccceecc
Q 034773 18 QFGFEDRSKSYSFN 31 (84)
Q Consensus 18 ~~g~~~~s~sy~fn 31 (84)
+.||.+|+.+|.||
T Consensus 106 GlGF~eR~dafDfn 119 (253)
T KOG2500|consen 106 GLGFGERGDAFDFN 119 (253)
T ss_pred eecccccccccchh
Confidence 58999999999999
No 5
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=19.13 E-value=37 Score=27.44 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=19.4
Q ss_pred cceecc-CCcCCcccccCCCChhhhh
Q 034773 26 KSYSFN-GPTGKADVLASSGNPESKR 50 (84)
Q Consensus 26 ~sy~fn-gp~~k~~~~~~~~dpE~kR 50 (84)
=|||+| |+.+++-++-.+++||+-=
T Consensus 182 lsWNyNYG~ag~alg~dLL~~Pe~V~ 207 (286)
T KOG4742|consen 182 LSWNYNYGAAGKALGLDLLRNPELVA 207 (286)
T ss_pred ccccccccHhHhhcCchhhcCcchhc
Confidence 567877 6777888888899998743
No 6
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=18.69 E-value=52 Score=18.91 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=8.3
Q ss_pred CCCChhhhhh
Q 034773 42 SSGNPESKRR 51 (84)
Q Consensus 42 ~~~dpE~kRk 51 (84)
...|||+||=
T Consensus 19 ~l~Dpdvqrg 28 (42)
T PF07849_consen 19 ALRDPDVQRG 28 (42)
T ss_pred HHcCHHHHHH
Confidence 5789999984
No 7
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=18.10 E-value=64 Score=22.72 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=14.3
Q ss_pred Chhhhhhhhhceeeee
Q 034773 45 NPESKRRKRVAAYNMY 60 (84)
Q Consensus 45 dpE~kRkkRVA~Yk~Y 60 (84)
-+|.+||++|.+++.|
T Consensus 25 ~~E~~RR~~~~~~~~~ 40 (168)
T PF15625_consen 25 RAEQNRRQRVQKTRYY 40 (168)
T ss_pred hhHhhhHHHhhheeEE
Confidence 3699999999999988
No 8
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=15.04 E-value=72 Score=25.38 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=6.7
Q ss_pred CCChhhhh
Q 034773 43 SGNPESKR 50 (84)
Q Consensus 43 ~~dpE~kR 50 (84)
.||||||+
T Consensus 32 DNDPeMK~ 39 (299)
T PF02009_consen 32 DNDPEMKS 39 (299)
T ss_pred CCcHHHHH
Confidence 47999986
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=14.62 E-value=99 Score=21.26 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=20.1
Q ss_pred CCCChhhhhhhhhceeeeeee-cch
Q 034773 42 SSGNPESKRRKRVAAYNMYTM-EGK 65 (84)
Q Consensus 42 ~~~dpE~kRkkRVA~Yk~Y~v-EGK 65 (84)
...+|+..|--+.++|+.|.+ |++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
T cd07402 215 APDLDDFALDALAPGYRALSLHEDG 239 (240)
T ss_pred cCCCCcccccccCCCCcEEEEecCC
Confidence 467889999999999999988 654
No 10
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=14.35 E-value=38 Score=20.70 Aligned_cols=19 Identities=5% Similarity=0.511 Sum_probs=14.1
Q ss_pred cchhhhhhhccceehhccc
Q 034773 63 EGKLKSSLRNSFKWIKNKF 81 (84)
Q Consensus 63 EGKvK~S~R~sfrWiK~k~ 81 (84)
.+.+...|++++.||.+.-
T Consensus 41 ~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 41 DAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp TS-SSBSSHHHHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 4588999999999998753
Done!