Query 034773
Match_columns 84
No_of_seqs 88 out of 90
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 10:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tqz_A Necap1; endocytosis, st 26.6 5.6 0.00019 27.8 -2.0 14 18-31 107-120 (133)
2 1ifp_A PF3 inovirus, major coa 24.4 9.4 0.00032 22.5 -1.0 14 68-81 30-43 (44)
3 1dul_A Signal recognition part 22.1 29 0.00098 21.4 0.8 8 49-56 36-43 (69)
4 3c01_A Surface presentation of 19.6 37 0.0013 19.8 0.9 12 43-54 14-25 (48)
5 1hq1_A Signal recognition part 18.2 34 0.0012 22.4 0.6 8 49-56 70-77 (105)
6 2e6r_A Jumonji/ARID domain-con 17.8 56 0.0019 20.3 1.5 20 16-35 72-91 (92)
7 1mfq_C SRP54, signal recogniti 17.3 35 0.0012 23.3 0.5 11 46-56 81-96 (129)
8 2xbt_A Cellulosomal scaffoldin 17.1 32 0.0011 23.6 0.3 12 23-34 126-137 (160)
9 1g43_A Scaffolding protein; be 15.4 37 0.0013 23.1 0.2 10 23-32 127-136 (160)
10 2wnx_A Glycoside hydrolase, fa 15.4 34 0.0012 23.6 0.1 12 23-34 125-136 (170)
No 1
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=26.56 E-value=5.6 Score=27.80 Aligned_cols=14 Identities=43% Similarity=0.983 Sum_probs=12.9
Q ss_pred ccCccccccceecc
Q 034773 18 QFGFEDRSKSYSFN 31 (84)
Q Consensus 18 ~~g~~~~s~sy~fn 31 (84)
+.||++|+.+++||
T Consensus 107 GiGF~eR~dAFDF~ 120 (133)
T 1tqz_A 107 GIGFTDRGDAFDFN 120 (133)
T ss_dssp EEECSCHHHHHHHH
T ss_pred eeeecccccccchH
Confidence 47999999999998
No 2
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=24.37 E-value=9.4 Score=22.49 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=10.0
Q ss_pred hhhhccceehhccc
Q 034773 68 SSLRNSFKWIKNKF 81 (84)
Q Consensus 68 ~S~R~sfrWiK~k~ 81 (84)
+.+--++||||..+
T Consensus 30 aavvlgirwikaqf 43 (44)
T 1ifp_A 30 AAVVLGIRWIKAQF 43 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhHhhc
Confidence 34556899999764
No 3
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=22.10 E-value=29 Score=21.38 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=6.8
Q ss_pred hhhhhhce
Q 034773 49 KRRKRVAA 56 (84)
Q Consensus 49 kRkkRVA~ 56 (84)
.|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T 1dul_A 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999984
No 4
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=19.64 E-value=37 Score=19.81 Aligned_cols=12 Identities=50% Similarity=0.889 Sum_probs=9.2
Q ss_pred CCChhhhhhhhh
Q 034773 43 SGNPESKRRKRV 54 (84)
Q Consensus 43 ~~dpE~kRkkRV 54 (84)
-+||++|-++|=
T Consensus 14 EGdP~iK~~~R~ 25 (48)
T 3c01_A 14 EGNPEVKSKRRE 25 (48)
T ss_pred cCCHHHHHHHHH
Confidence 479999977664
No 5
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=18.22 E-value=34 Score=22.43 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=6.7
Q ss_pred hhhhhhce
Q 034773 49 KRRKRVAA 56 (84)
Q Consensus 49 kRkkRVA~ 56 (84)
.||+|||.
T Consensus 70 SR~~RIA~ 77 (105)
T 1hq1_A 70 SRKRRIAA 77 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999984
No 6
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.76 E-value=56 Score=20.26 Aligned_cols=20 Identities=40% Similarity=0.929 Sum_probs=16.4
Q ss_pred CcccCccccccceeccCCcC
Q 034773 16 DAQFGFEDRSKSYSFNGPTG 35 (84)
Q Consensus 16 ~~~~g~~~~s~sy~fngp~~ 35 (84)
...|||++....|+++.|.+
T Consensus 72 ~~~~Gf~~~~~~y~l~~~~~ 91 (92)
T 2e6r_A 72 PEAFGFEQATQEYSLSGPSS 91 (92)
T ss_dssp SSCCSCCCCCCCCCCSCCSC
T ss_pred ccccChhhcCCceeecccCC
Confidence 45699999999999987753
No 7
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=17.33 E-value=35 Score=23.31 Aligned_cols=11 Identities=36% Similarity=0.332 Sum_probs=8.9
Q ss_pred hhhh-----hhhhhce
Q 034773 46 PESK-----RRKRVAA 56 (84)
Q Consensus 46 pE~k-----RkkRVA~ 56 (84)
|++= |++|||.
T Consensus 81 P~ii~~~~SRk~RIA~ 96 (129)
T 1mfq_C 81 AKVFSKQPGRIQRVAR 96 (129)
T ss_dssp HHHHHHCTHHHHHHHH
T ss_pred cccccCChHHHHHHHc
Confidence 7765 9999984
No 8
>2xbt_A Cellulosomal scaffoldin; sugar binding protein; 1.83A {Bacteroides cellulosolvens}
Probab=17.06 E-value=32 Score=23.62 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=9.7
Q ss_pred ccccceeccCCc
Q 034773 23 DRSKSYSFNGPT 34 (84)
Q Consensus 23 ~~s~sy~fngp~ 34 (84)
+++|+|||+|-.
T Consensus 126 dqsNDySf~~~~ 137 (160)
T 2xbt_A 126 DQSNDYSYPGSM 137 (160)
T ss_dssp EGGGCTTCCSCC
T ss_pred ccCCCcccCCcc
Confidence 679999998754
No 9
>1g43_A Scaffolding protein; beta-sandwich, structural protein; 2.20A {Clostridium cellulolyticum} SCOP: b.2.2.2
Probab=15.43 E-value=37 Score=23.13 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.8
Q ss_pred ccccceeccC
Q 034773 23 DRSKSYSFNG 32 (84)
Q Consensus 23 ~~s~sy~fng 32 (84)
+++|+|||++
T Consensus 127 dqsNDySf~~ 136 (160)
T 1g43_A 127 DQSNDWSYTA 136 (160)
T ss_dssp EGGGCTTCCC
T ss_pred cccCCcccCC
Confidence 5789999997
No 10
>2wnx_A Glycoside hydrolase, family 9; cellulose degradation; 1.31A {Clostridium thermocellum} PDB: 2wo4_A 2wob_A
Probab=15.38 E-value=34 Score=23.62 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.7
Q ss_pred ccccceeccCCc
Q 034773 23 DRSKSYSFNGPT 34 (84)
Q Consensus 23 ~~s~sy~fngp~ 34 (84)
+++|+|||+|-.
T Consensus 125 dqsNDySf~~~~ 136 (170)
T 2wnx_A 125 DQTDDYSYNSEM 136 (170)
T ss_dssp CGGGCTTCCGGG
T ss_pred CCcCCcccCCcc
Confidence 579999998654
Done!