Query 034773
Match_columns 84
No_of_seqs 88 out of 90
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 10:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034773.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034773hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tqza1 b.55.1.11 (A:1-133) Ne 28.0 2.3 0.00016 28.3 -2.1 14 18-31 107-120 (133)
2 d1xmwa2 b.1.1.4 (A:113-178) CD 26.6 7.3 0.00053 23.0 0.3 23 58-80 3-25 (66)
3 d1tf4a2 b.2.2.2 (A:461-605) En 18.2 15 0.0011 23.4 0.5 11 23-33 111-121 (145)
4 d1g87a2 b.2.2.2 (A:457-614) En 18.1 15 0.0011 23.7 0.5 10 23-32 122-131 (158)
5 d2a40b1 d.151.1.1 (B:1-260) De 16.5 17 0.0012 20.0 0.3 7 53-59 2-8 (260)
6 d1akoa_ d.151.1.1 (A:) DNA-rep 15.7 12 0.00091 21.0 -0.4 24 53-80 2-25 (268)
7 d1hd7a_ d.151.1.1 (A:) DNA rep 15.6 14 0.001 22.0 -0.2 24 53-80 20-44 (275)
8 d1qb2a_ a.36.1.1 (A:) SRP54M { 12.9 22 0.0016 21.5 0.2 7 50-56 77-83 (107)
9 d1g43a_ b.2.2.2 (A:) Cellusoma 11.8 25 0.0018 22.6 0.2 10 23-32 127-136 (160)
10 d1dula_ a.36.1.1 (A:) Signal s 10.2 28 0.002 20.2 -0.0 8 49-56 36-43 (69)
No 1
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.04 E-value=2.3 Score=28.32 Aligned_cols=14 Identities=43% Similarity=0.983 Sum_probs=12.9
Q ss_pred ccCccccccceecc
Q 034773 18 QFGFEDRSKSYSFN 31 (84)
Q Consensus 18 ~~g~~~~s~sy~fn 31 (84)
+.||+||+.+|.||
T Consensus 107 GiGF~dR~dAFDFn 120 (133)
T d1tqza1 107 GIGFTDRGDAFDFN 120 (133)
T ss_dssp EEECSCHHHHHHHH
T ss_pred EeeecccCcccchh
Confidence 47999999999998
No 2
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}
Probab=26.58 E-value=7.3 Score=22.99 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=19.6
Q ss_pred eeeeecchhhhhhhccceehhcc
Q 034773 58 NMYTMEGKLKSSLRNSFKWIKNK 80 (84)
Q Consensus 58 k~Y~vEGKvK~S~R~sfrWiK~k 80 (84)
.|+..|+||=-+--.++.|+|+.
T Consensus 3 ~v~e~edkV~L~Cn~sI~w~k~~ 25 (66)
T d1xmwa2 3 EVLEAEDKVILKCNSSITLLQGT 25 (66)
T ss_dssp EEEEETTEEEEECSSSCEEEEEC
T ss_pred ceEecCceEEEEccCeEEEccCc
Confidence 68889999887778899999984
No 3
>d1tf4a2 b.2.2.2 (A:461-605) Endo/exocellulase:cellobiose E-4, C-terminal domain {Thermomonospora fusca [TaxId: 2021]}
Probab=18.17 E-value=15 Score=23.36 Aligned_cols=11 Identities=45% Similarity=0.767 Sum_probs=9.1
Q ss_pred ccccceeccCC
Q 034773 23 DRSKSYSFNGP 33 (84)
Q Consensus 23 ~~s~sy~fngp 33 (84)
+++|+|||+|-
T Consensus 111 d~sNDySy~~~ 121 (145)
T d1tf4a2 111 DPSNDWSFQGI 121 (145)
T ss_dssp CGGGCGGGTTC
T ss_pred CccCCcccccc
Confidence 57899999965
No 4
>d1g87a2 b.2.2.2 (A:457-614) Endo/exocellulase:cellobiose E-4, C-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]}
Probab=18.07 E-value=15 Score=23.72 Aligned_cols=10 Identities=20% Similarity=0.797 Sum_probs=9.1
Q ss_pred ccccceeccC
Q 034773 23 DRSKSYSFNG 32 (84)
Q Consensus 23 ~~s~sy~fng 32 (84)
+++|+|||+|
T Consensus 122 dqsNDySy~g 131 (158)
T d1g87a2 122 NPKNDFSYDG 131 (158)
T ss_dssp CGGGCGGGTT
T ss_pred ccCCCcccCC
Confidence 6899999997
No 5
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.51 E-value=17 Score=19.96 Aligned_cols=7 Identities=43% Similarity=1.046 Sum_probs=4.1
Q ss_pred hhceeee
Q 034773 53 RVAAYNM 59 (84)
Q Consensus 53 RVA~Yk~ 59 (84)
|||+|||
T Consensus 2 rI~s~Ni 8 (260)
T d2a40b1 2 KIAAFNI 8 (260)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 5566665
No 6
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=15.69 E-value=12 Score=20.99 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=11.6
Q ss_pred hhceeeeeeecchhhhhhhccceehhcc
Q 034773 53 RVAAYNMYTMEGKLKSSLRNSFKWIKNK 80 (84)
Q Consensus 53 RVA~Yk~Y~vEGKvK~S~R~sfrWiK~k 80 (84)
||++||| .| ++...+.-++||+..
T Consensus 2 ki~S~Nv---nG-~r~r~~~i~~~i~~~ 25 (268)
T d1akoa_ 2 KFVSFNI---NG-LRARPHQLEAIVEKH 25 (268)
T ss_dssp EEEEEEC---SC-GGGCHHHHHHHHHHH
T ss_pred EEEEEEe---CC-HHHhHHHHHHHHHHC
Confidence 5667765 23 122333345566543
No 7
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.59 E-value=14 Score=22.04 Aligned_cols=24 Identities=21% Similarity=0.868 Sum_probs=14.6
Q ss_pred hhceeeeeeecchhhhhhhc-cceehhcc
Q 034773 53 RVAAYNMYTMEGKLKSSLRN-SFKWIKNK 80 (84)
Q Consensus 53 RVA~Yk~Y~vEGKvK~S~R~-sfrWiK~k 80 (84)
||++||| .| +++.+++ -+.||+..
T Consensus 20 ki~S~Nv---nG-lr~~~~~~~~~~i~~~ 44 (275)
T d1hd7a_ 20 KICSWNV---DG-LRAWIKKKGLDWVKEE 44 (275)
T ss_dssp EEEEEEC---SS-HHHHHHTTHHHHHHHH
T ss_pred EEEEEEe---cc-HHhhhhccHHHHHHhC
Confidence 7999998 33 2333333 35788764
No 8
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.88 E-value=22 Score=21.50 Aligned_cols=7 Identities=57% Similarity=0.653 Sum_probs=6.1
Q ss_pred hhhhhce
Q 034773 50 RRKRVAA 56 (84)
Q Consensus 50 RkkRVA~ 56 (84)
|++|||.
T Consensus 77 R~~RIA~ 83 (107)
T d1qb2a_ 77 RIQRVAR 83 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999984
No 9
>d1g43a_ b.2.2.2 (A:) Cellusomal scaffolding protein A, scaffoldin {Clostridium cellulolyticum [TaxId: 1521]}
Probab=11.82 E-value=25 Score=22.62 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.8
Q ss_pred ccccceeccC
Q 034773 23 DRSKSYSFNG 32 (84)
Q Consensus 23 ~~s~sy~fng 32 (84)
+++|+|||+|
T Consensus 127 dqsNDySy~~ 136 (160)
T d1g43a_ 127 DQSNDWSYTA 136 (160)
T ss_dssp EGGGCTTCCC
T ss_pred ccCCCcCccC
Confidence 6789999986
No 10
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=10.17 E-value=28 Score=20.15 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=6.6
Q ss_pred hhhhhhce
Q 034773 49 KRRKRVAA 56 (84)
Q Consensus 49 kRkkRVA~ 56 (84)
-|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T d1dula_ 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHc
Confidence 59999984
Done!