BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034774
         (84 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H32|B Chain B, Crystal Structure Of D-Dimer From Human Fibrin Complexed
          With Gly-His- Arg-Pro-Tyr-Amide
 pdb|3H32|E Chain E, Crystal Structure Of D-Dimer From Human Fibrin Complexed
          With Gly-His- Arg-Pro-Tyr-Amide
          Length = 458

 Score = 28.9 bits (63), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 13 MSSARSYLPRIRPSPPPVHANRLRSRLSLPTTTR 46
          +   R   P +RP+PPP+     R+R +    T+
Sbjct: 19 LDKKREEAPSLRPAPPPISGGGYRARPAKAAATQ 52


>pdb|3GHG|B Chain B, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|E Chain E, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|H Chain H, Crystal Structure Of Human Fibrinogen
 pdb|3GHG|K Chain K, Crystal Structure Of Human Fibrinogen
          Length = 461

 Score = 28.9 bits (63), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 13 MSSARSYLPRIRPSPPPVHANRLRSRLSLPTTTR 46
          +   R   P +RP+PPP+     R+R +    T+
Sbjct: 19 LDKKREEAPSLRPAPPPISGGGYRARPAKAAATQ 52


>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
 pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
 pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
 pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
 pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
 pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
 pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
 pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
 pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
 pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
 pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
           Thiazole-Based Peptide Mimetic #31
 pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
           Thiazole-Based Peptide Mimetic #31
 pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
           Dpp-Iv, Cd26) In Complex With 11a19 Fab
 pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
           Dpp-Iv, Cd26) In Complex With 11a19 Fab
 pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
           Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
 pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
           Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
          Length = 730

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 1   MAWRCGTSARTVMSSARSYLPRIRPSPP 28
           + W C T+   + +SA  +  R RP+ P
Sbjct: 296 LVWNCPTTQEHIETSATGWCGRFRPAEP 323


>pdb|2A45|H Chain H, Crystal Structure Of The Complex Between Thrombin And
          The Central "e" Region Of Fibrin
 pdb|2A45|K Chain K, Crystal Structure Of The Complex Between Thrombin And
          The Central "e" Region Of Fibrin
          Length = 91

 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 13 MSSARSYLPRIRPSPPPVHANRLRSR 38
          +   R   P +RP+PPP+     R+R
Sbjct: 5  LDKKREEAPSLRPAPPPISGGGYRAR 30


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.128    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,088,759
Number of Sequences: 62578
Number of extensions: 53914
Number of successful extensions: 133
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 4
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)