Query 034774
Match_columns 84
No_of_seqs 103 out of 113
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00023 Ank: Ankyrin repeat H 12.7 1.1E+02 0.0023 15.4 0.8 10 54-63 3-12 (33)
2 PF08168 NUC205: NUC205 domain 11.5 76 0.0016 19.0 -0.1 10 49-58 26-36 (44)
3 COG3535 Uncharacterized conser 9.3 1.4E+02 0.003 24.8 0.6 19 44-65 100-118 (357)
4 PF13606 Ank_3: Ankyrin repeat 8.2 1.9E+02 0.0042 14.7 0.7 9 55-63 4-12 (30)
5 PF13857 Ank_5: Ankyrin repeat 6.7 2.4E+02 0.0053 15.8 0.8 13 53-65 16-28 (56)
6 PF15249 GLTSCR1: Glioma tumor 6.6 1.5E+02 0.0032 19.7 -0.2 10 50-59 27-36 (109)
7 PF11421 Synthase_beta: ATP sy 6.5 3.7E+02 0.0081 16.4 1.5 8 1-9 1-8 (49)
8 PF05625 PAXNEB: PAXNEB protei 5.7 2E+02 0.0043 22.9 0.0 12 1-12 122-133 (363)
9 cd03521 Link_domain_KIAA0527_l 5.6 2.9E+02 0.0062 19.0 0.7 14 71-84 44-57 (95)
10 PF10790 DUF2604: Protein of U 5.0 4E+02 0.0086 17.5 1.1 14 55-68 16-29 (76)
No 1
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=12.69 E-value=1.1e+02 Score=15.37 Aligned_cols=10 Identities=30% Similarity=0.315 Sum_probs=7.3
Q ss_pred cchhHHHHHH
Q 034774 54 LMPLHGVVAA 63 (84)
Q Consensus 54 llPLHsavAs 63 (84)
.-|||.|+-.
T Consensus 3 ~TpLh~A~~~ 12 (33)
T PF00023_consen 3 NTPLHYAAQR 12 (33)
T ss_dssp BBHHHHHHHT
T ss_pred ccHHHHHHHH
Confidence 4589988764
No 2
>PF08168 NUC205: NUC205 domain; InterPro: IPR012584 This domain is found in a novel family of nucleolar proteins [].; GO: 0005634 nucleus
Probab=11.50 E-value=76 Score=19.01 Aligned_cols=10 Identities=40% Similarity=1.245 Sum_probs=7.6
Q ss_pred ccc-cccchhH
Q 034774 49 GCT-QSLMPLH 58 (84)
Q Consensus 49 g~~-~SllPLH 58 (84)
||+ ++++|+|
T Consensus 26 GCiyetlip~~ 36 (44)
T PF08168_consen 26 GCIYETLIPIS 36 (44)
T ss_pred Cceeeeecccc
Confidence 565 8899887
No 3
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=9.30 E-value=1.4e+02 Score=24.83 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=15.2
Q ss_pred chhccccccccchhHHHHHHHh
Q 034774 44 TTRSIGCTQSLMPLHGVVAATH 65 (84)
Q Consensus 44 ~~~~lg~~~SllPLHsavAsAr 65 (84)
.+.|.|...||+|| +++|.
T Consensus 100 ~s~EiGG~Ns~ip~---v~aa~ 118 (357)
T COG3535 100 ISIEIGGINSLIPL---VVAAQ 118 (357)
T ss_pred EEeecCCcchhHHH---HHHHh
Confidence 46789999999999 55554
No 4
>PF13606 Ank_3: Ankyrin repeat
Probab=8.22 E-value=1.9e+02 Score=14.67 Aligned_cols=9 Identities=33% Similarity=0.504 Sum_probs=6.8
Q ss_pred chhHHHHHH
Q 034774 55 MPLHGVVAA 63 (84)
Q Consensus 55 lPLHsavAs 63 (84)
-|||.|+..
T Consensus 4 T~Lh~A~~~ 12 (30)
T PF13606_consen 4 TPLHLAASN 12 (30)
T ss_pred CHHHHHHHh
Confidence 489988765
No 5
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=6.74 E-value=2.4e+02 Score=15.78 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=7.9
Q ss_pred ccchhHHHHHHHh
Q 034774 53 SLMPLHGVVAATH 65 (84)
Q Consensus 53 SllPLHsavAsAr 65 (84)
...|||.|+....
T Consensus 16 G~T~LH~A~~~g~ 28 (56)
T PF13857_consen 16 GNTPLHWAARYGH 28 (56)
T ss_dssp S--HHHHHHHHT-
T ss_pred CCcHHHHHHHcCc
Confidence 4579999987543
No 6
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=6.65 E-value=1.5e+02 Score=19.66 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=8.4
Q ss_pred cccccchhHH
Q 034774 50 CTQSLMPLHG 59 (84)
Q Consensus 50 ~~~SllPLHs 59 (84)
.++-|||||.
T Consensus 27 A~~RLLPYHv 36 (109)
T PF15249_consen 27 AVERLLPYHV 36 (109)
T ss_pred HHHHhcchhh
Confidence 6788999995
No 7
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=6.47 E-value=3.7e+02 Score=16.40 Aligned_cols=8 Identities=38% Similarity=0.202 Sum_probs=2.5
Q ss_pred Cccccchhh
Q 034774 1 MAWRCGTSA 9 (84)
Q Consensus 1 MAsR~gs~s 9 (84)
||+| +.++
T Consensus 1 MASR-R~lS 8 (49)
T PF11421_consen 1 MASR-RLLS 8 (49)
T ss_dssp ---S-HHHH
T ss_pred CchH-HHHH
Confidence 8888 4433
No 8
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ]. It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
Probab=5.73 E-value=2e+02 Score=22.89 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=0.0
Q ss_pred CccccchhhHhH
Q 034774 1 MAWRCGTSARTV 12 (84)
Q Consensus 1 MAsR~gs~sRs~ 12 (84)
.||||+.+.+--
T Consensus 122 IAWRY~~~~~~~ 133 (363)
T PF05625_consen 122 IAWRYEKLPKFQ 133 (363)
T ss_dssp ------------
T ss_pred eEeecccCcccc
Confidence 389998887654
No 9
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=5.61 E-value=2.9e+02 Score=18.97 Aligned_cols=14 Identities=36% Similarity=0.107 Sum_probs=11.2
Q ss_pred ccccccceecCCCC
Q 034774 71 SVHARAFCDLSQGT 84 (84)
Q Consensus 71 s~~~r~~~~LsqG~ 84 (84)
+.+.-.++||++|+
T Consensus 44 Gld~C~aGWLaDGT 57 (95)
T cd03521 44 FFSACARGWLADGT 57 (95)
T ss_pred CccccccccccCCc
Confidence 66777789999985
No 10
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=5.05 E-value=4e+02 Score=17.51 Aligned_cols=14 Identities=43% Similarity=0.401 Sum_probs=11.1
Q ss_pred chhHHHHHHHhhhc
Q 034774 55 MPLHGVVAATHLTS 68 (84)
Q Consensus 55 lPLHsavAsArLtS 68 (84)
-|||.+++-|+=.|
T Consensus 16 aPLh~v~akALe~s 29 (76)
T PF10790_consen 16 APLHPVRAKALEQS 29 (76)
T ss_pred CcchHHHHHHHhhc
Confidence 49999999886544
Done!