Query 034774
Match_columns 84
No_of_seqs 103 out of 113
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8j_A Elongator complex prote 4.8 1.6E+02 0.0054 22.9 0.0 9 1-9 143-151 (361)
2 1n0q_A 3ANK, 3 ankyrin repeats 3.3 3.7E+02 0.013 14.4 0.8 11 53-63 35-45 (93)
3 1o7b_T Tumor necrosis factor-i 2.8 5.2E+02 0.018 16.2 1.1 15 70-84 42-56 (98)
4 3aaa_C Myotrophin, protein V-1 2.7 4.6E+02 0.016 14.7 0.8 11 53-63 73-83 (123)
5 2vda_B Maltoporin; sugar trans 2.6 7.1E+02 0.024 12.6 1.3 12 55-66 11-22 (28)
6 2o3i_A Hypothetical protein; N 2.4 3.7E+02 0.013 21.1 -0.0 20 44-66 105-124 (405)
7 3bbo_P Ribosomal protein L17; 2.4 3.8E+02 0.013 19.6 0.0 16 12-27 9-24 (205)
8 2yy8_A ATRM56, UPF0106 protein 2.4 1.9E+02 0.0066 21.1 -1.6 16 64-79 15-30 (201)
9 2o3a_A UPF0106 protein AF_0751 2.3 1.9E+02 0.0066 20.8 -1.6 16 64-79 18-33 (178)
10 2h2t_B Low affinity immunoglob 2.3 3.8E+02 0.013 17.0 0.0 11 49-59 165-175 (175)
No 1
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=4.79 E-value=1.6e+02 Score=22.86 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=0.0
Q ss_pred Cccccchhh
Q 034774 1 MAWRCGTSA 9 (84)
Q Consensus 1 MAsR~gs~s 9 (84)
.||||+..-
T Consensus 143 IAWRY~~~~ 151 (361)
T 4a8j_A 143 IAWKYKLAD 151 (361)
T ss_dssp ---------
T ss_pred EEEecCCCC
Confidence 389999664
No 2
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=3.34 E-value=3.7e+02 Score=14.38 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=8.1
Q ss_pred ccchhHHHHHH
Q 034774 53 SLMPLHGVVAA 63 (84)
Q Consensus 53 SllPLHsavAs 63 (84)
..-|||.|+..
T Consensus 35 g~t~L~~A~~~ 45 (93)
T 1n0q_A 35 GRTPLHLAARN 45 (93)
T ss_dssp SCCHHHHHHHT
T ss_pred CCCHHHHHHHc
Confidence 45699998754
No 3
>1o7b_T Tumor necrosis factor-inducible protein TSG-6; hyaluronan-binding domain, carbohydrate-binding domain, LINK module, cell adhesion, glycoprotein; NMR {Homo sapiens} SCOP: d.169.1.4 PDB: 1o7c_T 2pf5_A*
Probab=2.81 E-value=5.2e+02 Score=16.21 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=11.4
Q ss_pred cccccccceecCCCC
Q 034774 70 ISVHARAFCDLSQGT 84 (84)
Q Consensus 70 ls~~~r~~~~LsqG~ 84 (84)
.+.+--.++||++|+
T Consensus 42 ~G~~~C~~GWL~Dgs 56 (98)
T 1o7b_T 42 IGFHVCAAGWMAKGR 56 (98)
T ss_dssp TTCCCSSCEEBTTTB
T ss_pred cCccccccccccCCe
Confidence 566777789999874
No 4
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=2.72 E-value=4.6e+02 Score=14.67 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=8.3
Q ss_pred ccchhHHHHHH
Q 034774 53 SLMPLHGVVAA 63 (84)
Q Consensus 53 SllPLHsavAs 63 (84)
..-|||.|+..
T Consensus 73 g~tpL~~A~~~ 83 (123)
T 3aaa_C 73 HITPLLSAVYE 83 (123)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHc
Confidence 45799998764
No 5
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=2.57 E-value=7.1e+02 Score=12.63 Aligned_cols=12 Identities=42% Similarity=0.509 Sum_probs=8.1
Q ss_pred chhHHHHHHHhh
Q 034774 55 MPLHGVVAATHL 66 (84)
Q Consensus 55 lPLHsavAsArL 66 (84)
+||-.||++.-+
T Consensus 11 lplavav~agv~ 22 (28)
T 2vda_B 11 LPLAVAVAAGVM 22 (28)
T ss_dssp CTHHHHHHHHTT
T ss_pred CchHHHHHHHHh
Confidence 678777776544
No 6
>2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural genomics, PSI-2, protein structure initiative; 2.30A {Chromobacterium violaceum} SCOP: e.73.1.1
Probab=2.37 E-value=3.7e+02 Score=21.15 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=15.2
Q ss_pred chhccccccccchhHHHHHHHhh
Q 034774 44 TTRSIGCTQSLMPLHGVVAATHL 66 (84)
Q Consensus 44 ~~~~lg~~~SllPLHsavAsArL 66 (84)
.+.|.|...+++|| +++|++
T Consensus 105 i~~EiGG~N~~~pl---~~AA~~ 124 (405)
T 2o3i_A 105 VAPESGALGFVVAS---LVAAKL 124 (405)
T ss_dssp ECSSSSHHHHHHHH---HHHHHH
T ss_pred EeeccCccchHHHH---HHHHHc
Confidence 57889999999999 444443
No 7
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=2.35 E-value=3.8e+02 Score=19.61 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=0.0
Q ss_pred HHHHhhccCCCCCCCC
Q 034774 12 VMSSARSYLPRIRPSP 27 (84)
Q Consensus 12 ~~S~~rs~~~r~r~pp 27 (84)
-|+.+++.+|..++++
T Consensus 9 ~~~~~~~~~~~~~~~~ 24 (205)
T 3bbo_P 9 SMSCLKSALPSIQPIS 24 (205)
T ss_dssp ----------------
T ss_pred cHHHHHHhCCCCCCCC
Confidence 3788888888766533
No 8
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=2.35 E-value=1.9e+02 Score=21.13 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=12.2
Q ss_pred Hhhhccccccccccee
Q 034774 64 THLTSHISVHARAFCD 79 (84)
Q Consensus 64 ArLtS~ls~~~r~~~~ 79 (84)
.|+|.|.++.+|++++
T Consensus 15 kRiTTHV~LtARAfGA 30 (201)
T 2yy8_A 15 KRVTTHVALTARAFGA 30 (201)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHhcC
Confidence 3778888888888764
No 9
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=2.34 E-value=1.9e+02 Score=20.77 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=12.3
Q ss_pred Hhhhccccccccccee
Q 034774 64 THLTSHISVHARAFCD 79 (84)
Q Consensus 64 ArLtS~ls~~~r~~~~ 79 (84)
.|+|.|.++.+|++++
T Consensus 18 kRiTTHV~LtARAfGA 33 (178)
T 2o3a_A 18 KRISTHVALTARAFGA 33 (178)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHhCC
Confidence 4778888888888764
No 10
>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor) (FC-epsilon-RII)...; C-type lectin, calcium-bound, lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A 1t8d_A
Probab=2.34 E-value=3.8e+02 Score=16.96 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=0.0
Q ss_pred ccccccchhHH
Q 034774 49 GCTQSLMPLHG 59 (84)
Q Consensus 49 g~~~SllPLHs 59 (84)
++.-+..|||+
T Consensus 165 ~~p~~~~~~~~ 175 (175)
T 2h2t_B 165 RLPTPSAPLHS 175 (175)
T ss_dssp -----------
T ss_pred cCCCCCccCcC
Done!