BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034777
MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFA
GALFIVVGVLILSKSSIEMKDSID

High Scoring Gene Products

Symbol, full name Information P value
AT1G30845 protein from Arabidopsis thaliana 2.6e-22

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034777
        (84 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956166 - symbol:AT1G30845 "AT1G30845" speci...   259  2.6e-22   1


>TAIR|locus:504956166 [details] [associations]
            symbol:AT1G30845 "AT1G30845" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 EMBL:AB238794 IPI:IPI00656925
            RefSeq:NP_683335.2 UniGene:At.49928 PaxDb:Q3C1C7 PRIDE:Q3C1C7
            EnsemblPlants:AT1G30845.1 GeneID:839968 KEGG:ath:AT1G30845
            eggNOG:NOG245602 OMA:QWFAGAL ProtClustDB:CLSN2693463
            Genevestigator:Q3C1C7 Uniprot:Q3C1C7
        Length = 118

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/84 (60%), Positives = 60/84 (71%)

Query:     1 MIRYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNXXXXXXXXXXXXEEQLSFQWFA 60
             +I+YGLV++ NV MW CY+NSLR LSSLQATVTNFA N            +E LSF+WFA
Sbjct:    35 VIKYGLVVICNVVMWACYVNSLRALSSLQATVTNFAANFLSSGLAGLFLFQESLSFRWFA 94

Query:    61 GALFIVVGVLILSKSSIEMKDSID 84
             GAL I  GVLILSKSS++ K S D
Sbjct:    95 GALSITTGVLILSKSSVDKKVSSD 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.137   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       84        72   0.00091  102 3  11 22  0.40    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  465 (50 KB)
  Total size of DFA:  83 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.59u 0.11s 5.70t   Elapsed:  00:00:00
  Total cpu time:  5.59u 0.11s 5.70t   Elapsed:  00:00:00
  Start:  Fri May 10 01:09:11 2013   End:  Fri May 10 01:09:11 2013

Back to top