BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034777
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02R28|ARNE_PSEAB Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=arnE PE=3 SV=1
Length = 115
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 35 FATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76
A NF+ LA F+F+E + + AG L IV GV++L +S+
Sbjct: 74 LALNFVLVTLAARFVFDEPVDRRHLAGLLLIVAGVVLLGRSA 115
>sp|Q9HY60|ARNE_PSEAE Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=arnE PE=3
SV=1
Length = 115
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 35 FATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76
A NF+ LA F+F+E + + AG L IV GV +L +S+
Sbjct: 74 LALNFVLVTLAARFVFDEPVDRRHLAGLLLIVAGVALLGRSA 115
>sp|B7VBM9|ARNE_PSEA8 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Pseudomonas aeruginosa (strain LESB58)
GN=arnE PE=3 SV=1
Length = 115
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 35 FATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76
A NF+ LA F+F+E + + AG L IV GV +L +S+
Sbjct: 74 LALNFVLVTLAARFVFDEPVDRRHLAGLLLIVAGVALLGRSA 115
>sp|Q7N3R0|ARNE_PHOLL Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=arnE PE=3 SV=1
Length = 113
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 5 GLVILFNVAMWGCYINSLRVLSSLQATV--TNFATNFLSSGLAGFFLFEEQLSFQWFAGA 62
G VIL V M + LR+L L + + NF+ LAG F ++E+ + ++G
Sbjct: 44 GAVILLAVGM----LFWLRLLQILPLGIAYPMLSINFIMVTLAGKFFYQEKAGIKHWSGV 99
Query: 63 LFIVVGVLILS 73
+FI++G+L++S
Sbjct: 100 VFIMLGILLMS 110
>sp|Q2KIX3|TMM42_BOVIN Transmembrane protein 42 OS=Bos taurus GN=TMEM42 PE=2 SV=1
Length = 159
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 11 NVAMWGCYINSLRV-LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGV 69
N MW + L + +SS A+VT +N L+S GF L+ E W+ G I+ G+
Sbjct: 81 NSLMWTFFSRGLSLSMSSAIASVTVTFSNILNSAFLGFVLYGECQEVLWWGGVFLILCGL 140
Query: 70 LILSKSSIEMKDSID 84
++ + + +
Sbjct: 141 TLIHRELPPPRKPLP 155
>sp|Q69YG0|TMM42_HUMAN Transmembrane protein 42 OS=Homo sapiens GN=TMEM42 PE=2 SV=2
Length = 159
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 25 LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74
+SS A+VT +N LSS G+ L+ E W+ G I+ G+ ++ +
Sbjct: 96 MSSAIASVTVTFSNILSSAFLGYVLYGECQEVLWWGGVFLILCGLTLIHR 145
>sp|P0CW82|EBRB_BACSU Multidrug resistance protein EbrB OS=Bacillus subtilis (strain 168)
GN=ebrB PE=3 SV=1
Length = 117
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 25 LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKD 81
LSS AT + T + + GF LF E +S + G ++ GV++L++S +D
Sbjct: 56 LSSAYATWSGVGTAL--TAIVGFLLFGETISLKGVFGLTLVIAGVVVLNQSKAHAED 110
>sp|A6V1N7|ARNE_PSEA7 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Pseudomonas aeruginosa (strain PA7)
GN=arnE PE=3 SV=1
Length = 115
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 35 FATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76
A NF+ L F+F+E + + AG L IV GV +L + +
Sbjct: 74 LALNFVLVTLVARFVFDEPVDRRHLAGLLLIVAGVALLGRQA 115
>sp|Q5R7Q1|TMM42_PONAB Transmembrane protein 42 OS=Pongo abelii GN=TMEM42 PE=2 SV=1
Length = 159
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 25 LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74
+SS A+VT +N LSS G+ L+ E W+ G I+ G+ ++ +
Sbjct: 96 MSSAIASVTVTFSNILSSAFLGYVLYGECQEVLWWGGVFLILCGLTLIHR 145
>sp|P0CW83|EBRB_BACAT Multidrug resistance protein EbrB OS=Bacillus atrophaeus GN=ebrB
PE=1 SV=1
Length = 117
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 25 LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKD 81
LSS AT + T + + GF LF E +S + G ++ GV++L++S K+
Sbjct: 56 LSSAYATWSGVGTAL--TAIVGFLLFGETISLKGVFGLTLVIAGVVVLNQSKAPAKE 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.141 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,844,686
Number of Sequences: 539616
Number of extensions: 674406
Number of successful extensions: 2154
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 20
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)