Query 034777
Match_columns 84
No_of_seqs 105 out of 431
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2510 Predicted membrane pro 99.6 1.1E-15 2.3E-20 105.1 6.4 71 3-75 69-140 (140)
2 PRK09541 emrE multidrug efflux 99.2 2.4E-10 5.3E-15 75.6 8.5 74 5-78 34-107 (110)
3 PRK15051 4-amino-4-deoxy-L-ara 99.2 1.8E-10 3.8E-15 75.8 7.7 71 4-75 40-110 (111)
4 PRK10452 multidrug efflux syst 99.2 2.7E-10 5.7E-15 76.7 8.4 75 4-78 33-107 (120)
5 COG2076 EmrE Membrane transpor 99.1 3.2E-10 7E-15 75.2 7.8 75 3-77 32-106 (106)
6 PRK11431 multidrug efflux syst 99.1 6.7E-10 1.5E-14 73.1 8.0 73 5-77 33-105 (105)
7 PRK10532 threonine and homoser 99.0 1.1E-09 2.4E-14 80.6 8.1 80 4-84 212-293 (293)
8 PRK02971 4-amino-4-deoxy-L-ara 99.0 2.2E-09 4.7E-14 72.6 7.9 73 4-77 51-125 (129)
9 PRK10650 multidrug efflux syst 99.0 3.5E-09 7.6E-14 70.2 7.8 71 4-74 38-108 (109)
10 PF13536 EmrE: Multidrug resis 98.9 7.5E-09 1.6E-13 67.0 8.1 71 8-80 42-112 (113)
11 PF00892 EamA: EamA-like trans 98.8 1.1E-08 2.5E-13 64.0 5.4 67 6-73 59-125 (126)
12 PRK11272 putative DMT superfam 98.8 1.8E-08 3.9E-13 73.9 6.7 73 6-79 218-290 (292)
13 PF00893 Multi_Drug_Res: Small 98.7 2.8E-08 6.1E-13 63.3 5.9 62 4-65 32-93 (93)
14 PRK11689 aromatic amino acid e 98.7 6.6E-08 1.4E-12 71.2 6.8 73 6-79 220-292 (295)
15 PLN00411 nodulin MtN21 family 98.7 7.7E-08 1.7E-12 74.0 7.3 66 9-75 264-329 (358)
16 TIGR03340 phn_DUF6 phosphonate 98.7 1.6E-07 3.5E-12 68.5 8.4 70 5-75 67-136 (281)
17 PRK15430 putative chlorampheni 98.6 9.1E-08 2E-12 70.5 6.2 68 7-75 219-286 (296)
18 TIGR03340 phn_DUF6 phosphonate 98.6 2.3E-07 5E-12 67.6 8.1 66 5-72 215-281 (281)
19 TIGR00950 2A78 Carboxylate/Ami 98.5 2.6E-07 5.7E-12 65.4 6.3 65 4-69 195-259 (260)
20 TIGR00950 2A78 Carboxylate/Ami 98.5 5.3E-07 1.2E-11 63.8 7.7 71 5-76 51-121 (260)
21 PRK11453 O-acetylserine/cystei 98.5 4.2E-07 9.1E-12 66.9 7.2 70 5-75 219-288 (299)
22 TIGR00688 rarD rarD protein. T 98.5 6.6E-07 1.4E-11 64.1 7.0 69 5-74 74-142 (256)
23 TIGR00817 tpt Tpt phosphate/ph 98.5 2E-07 4.4E-12 68.3 4.5 65 16-81 236-300 (302)
24 PRK15430 putative chlorampheni 98.4 1.3E-06 2.8E-11 64.4 7.4 68 6-74 78-145 (296)
25 PF10639 UPF0546: Uncharacteri 98.4 1.3E-06 2.9E-11 58.4 6.4 67 4-71 44-111 (113)
26 COG0697 RhaT Permeases of the 98.3 4.6E-06 9.9E-11 58.6 8.0 69 6-75 220-288 (292)
27 TIGR00817 tpt Tpt phosphate/ph 98.2 7.5E-06 1.6E-10 60.0 6.8 70 4-74 68-137 (302)
28 TIGR00776 RhaT RhaT L-rhamnose 98.1 7.2E-06 1.6E-10 60.8 6.3 69 7-75 61-137 (290)
29 PRK11453 O-acetylserine/cystei 98.1 1.9E-05 4.1E-10 58.2 7.5 64 11-75 69-133 (299)
30 COG0697 RhaT Permeases of the 98.1 1.9E-05 4.2E-10 55.4 6.8 75 4-79 73-148 (292)
31 TIGR00776 RhaT RhaT L-rhamnose 98.0 1.5E-05 3.2E-10 59.2 6.2 67 7-74 217-288 (290)
32 PTZ00343 triose or hexose phos 97.9 4.8E-05 1E-09 57.9 6.8 68 7-75 278-349 (350)
33 PTZ00343 triose or hexose phos 97.9 4.8E-05 1E-09 57.9 6.7 67 7-74 120-186 (350)
34 PLN00411 nodulin MtN21 family 97.8 8.4E-05 1.8E-09 57.3 6.7 70 4-74 81-156 (358)
35 PRK11689 aromatic amino acid e 97.6 0.00049 1.1E-08 50.7 7.8 65 10-75 70-138 (295)
36 PF08449 UAA: UAA transporter 97.5 0.00044 9.4E-09 51.2 7.4 74 5-79 229-302 (303)
37 PF06027 DUF914: Eukaryotic pr 97.5 0.0008 1.7E-08 51.9 8.1 67 9-76 238-307 (334)
38 PF08449 UAA: UAA transporter 97.4 0.00068 1.5E-08 50.2 6.6 72 4-76 67-138 (303)
39 PRK11272 putative DMT superfam 97.4 0.0011 2.4E-08 48.6 7.4 61 13-75 81-142 (292)
40 PF04142 Nuc_sug_transp: Nucle 97.3 0.00039 8.5E-09 51.1 4.8 60 18-78 34-93 (244)
41 PF03151 TPT: Triose-phosphate 97.3 0.0011 2.3E-08 43.6 6.5 55 16-71 96-150 (153)
42 PF06027 DUF914: Eukaryotic pr 97.3 0.00088 1.9E-08 51.7 6.7 71 5-76 83-153 (334)
43 PF05653 Mg_trans_NIPA: Magnes 97.2 0.0037 7.9E-08 47.3 8.6 72 6-78 218-296 (300)
44 PF06800 Sugar_transport: Suga 97.2 0.003 6.4E-08 47.8 8.0 68 14-81 58-129 (269)
45 PF05653 Mg_trans_NIPA: Magnes 97.1 0.00057 1.2E-08 51.7 3.7 58 16-75 65-123 (300)
46 KOG4510 Permease of the drug/m 96.9 0.00073 1.6E-08 52.2 2.6 64 9-75 107-170 (346)
47 TIGR00803 nst UDP-galactose tr 96.4 0.0011 2.4E-08 46.8 0.7 61 8-70 159-220 (222)
48 COG5006 rhtA Threonine/homoser 96.4 0.014 3.1E-07 44.5 6.5 66 3-70 212-278 (292)
49 COG2962 RarD Predicted permeas 95.5 0.058 1.3E-06 41.5 6.3 65 8-73 79-143 (293)
50 KOG4831 Unnamed protein [Funct 95.4 0.045 9.8E-07 37.1 5.0 63 8-72 59-123 (125)
51 COG4975 GlcU Putative glucose 95.0 0.0047 1E-07 47.1 -0.9 70 8-77 62-139 (288)
52 PRK13499 rhamnose-proton sympo 95.0 0.098 2.1E-06 40.8 6.4 63 12-74 84-153 (345)
53 KOG2922 Uncharacterized conser 94.9 0.0095 2.1E-07 46.4 0.6 73 3-80 70-143 (335)
54 KOG4314 Predicted carbohydrate 94.9 0.012 2.6E-07 44.1 1.1 67 16-83 68-134 (290)
55 KOG1580 UDP-galactose transpor 94.6 0.3 6.6E-06 37.5 8.0 65 6-71 246-310 (337)
56 COG2962 RarD Predicted permeas 94.5 0.13 2.9E-06 39.5 6.1 72 3-75 213-284 (293)
57 KOG2234 Predicted UDP-galactos 93.7 0.48 1E-05 37.2 7.8 55 17-73 108-163 (345)
58 KOG3912 Predicted integral mem 93.1 0.15 3.2E-06 39.9 4.0 37 39-75 123-159 (372)
59 KOG1583 UDP-N-acetylglucosamin 92.2 0.49 1.1E-05 36.8 5.8 68 7-75 244-315 (330)
60 KOG2765 Predicted membrane pro 92.0 0.1 2.2E-06 41.8 1.9 59 16-75 174-232 (416)
61 PF01350 Flavi_NS4A: Flaviviru 91.7 2.4 5.3E-05 29.6 8.4 72 4-83 54-125 (144)
62 KOG2922 Uncharacterized conser 91.0 0.62 1.3E-05 36.5 5.3 72 3-75 229-307 (335)
63 PRK10532 threonine and homoser 89.8 1.2 2.5E-05 32.7 5.7 60 8-74 78-137 (293)
64 PF04342 DUF486: Protein of un 89.5 0.48 1E-05 31.7 3.1 33 40-72 74-106 (108)
65 PF06800 Sugar_transport: Suga 89.1 0.38 8.2E-06 36.4 2.8 53 17-71 211-268 (269)
66 PRK13499 rhamnose-proton sympo 88.2 3 6.4E-05 32.6 7.2 59 16-75 275-342 (345)
67 KOG1444 Nucleotide-sugar trans 87.3 3.6 7.7E-05 32.1 7.1 53 23-76 250-302 (314)
68 KOG1582 UDP-galactose transpor 84.8 4.8 0.0001 31.6 6.7 45 25-71 285-329 (367)
69 KOG1441 Glucose-6-phosphate/ph 84.0 0.51 1.1E-05 36.4 1.1 40 42-81 275-314 (316)
70 COG3169 Uncharacterized protei 83.9 2.5 5.5E-05 28.3 4.2 35 40-74 81-115 (116)
71 KOG2234 Predicted UDP-galactos 81.5 5.6 0.00012 31.3 6.0 43 35-77 283-325 (345)
72 COG3238 Uncharacterized protei 79.5 2.7 5.9E-05 29.4 3.3 26 52-77 124-149 (150)
73 TIGR00803 nst UDP-galactose tr 78.1 1.5 3.2E-05 30.8 1.7 45 29-73 5-49 (222)
74 PF11297 DUF3098: Protein of u 78.0 3.1 6.7E-05 25.7 2.9 23 58-80 11-33 (69)
75 TIGR00688 rarD rarD protein. T 76.4 5.3 0.00011 28.4 4.2 43 6-49 213-255 (256)
76 PRK02237 hypothetical protein; 75.5 8.1 0.00017 25.9 4.5 38 39-76 70-107 (109)
77 PF04657 DUF606: Protein of un 75.2 10 0.00022 25.5 5.1 21 51-71 118-138 (138)
78 KOG2766 Predicted membrane pro 74.3 10 0.00022 29.6 5.4 71 6-80 231-305 (336)
79 KOG1581 UDP-galactose transpor 73.6 2.4 5.3E-05 33.1 1.9 64 6-71 246-310 (327)
80 KOG4510 Permease of the drug/m 72.7 3.7 8.1E-05 32.1 2.7 65 10-75 262-326 (346)
81 PF04142 Nuc_sug_transp: Nucle 72.2 4.7 0.0001 29.5 3.1 57 7-64 187-243 (244)
82 PF02694 UPF0060: Uncharacteri 68.3 12 0.00026 24.9 4.1 73 4-76 8-105 (107)
83 PF11998 DUF3493: Protein of u 67.1 21 0.00046 22.3 4.8 41 12-53 34-74 (75)
84 COG4975 GlcU Putative glucose 58.9 1.6 3.5E-05 33.5 -1.5 47 28-74 234-285 (288)
85 PF04418 DUF543: Domain of unk 58.3 9.6 0.00021 23.7 2.1 36 27-63 25-60 (75)
86 PF14007 YtpI: YtpI-like prote 56.0 44 0.00096 21.4 5.0 43 30-72 32-74 (89)
87 smart00793 AgrB Accessory gene 51.7 68 0.0015 22.4 5.8 56 8-67 57-112 (184)
88 PF06379 RhaT: L-rhamnose-prot 51.5 21 0.00045 28.2 3.4 66 16-82 88-161 (344)
89 PF07857 DUF1632: CEO family ( 50.9 33 0.00071 25.7 4.3 27 49-75 104-135 (254)
90 PF09948 DUF2182: Predicted me 49.9 25 0.00055 25.3 3.5 36 37-72 151-191 (191)
91 PF11295 DUF3096: Protein of u 48.6 37 0.0008 18.8 3.2 32 40-71 2-33 (39)
92 KOG2765 Predicted membrane pro 48.3 56 0.0012 26.5 5.4 71 8-79 325-395 (416)
93 PF13980 UPF0370: Uncharacteri 46.7 22 0.00047 21.6 2.3 16 56-72 6-21 (63)
94 MTH00057 ND6 NADH dehydrogenas 46.2 34 0.00073 24.2 3.6 36 43-78 132-169 (186)
95 COG2119 Predicted membrane pro 45.8 62 0.0014 23.6 4.9 60 21-80 28-91 (190)
96 PRK12554 undecaprenyl pyrophos 45.7 36 0.00078 25.8 3.9 39 34-73 90-132 (276)
97 TIGR02230 ATPase_gene1 F0F1-AT 44.7 56 0.0012 21.3 4.2 31 40-71 57-87 (100)
98 PF02673 BacA: Bacitracin resi 44.7 35 0.00075 25.5 3.6 44 32-75 82-129 (259)
99 COG4267 Predicted membrane pro 44.4 1E+02 0.0022 25.3 6.4 63 5-70 140-205 (467)
100 PF04835 Pox_A9: A9 protein co 42.2 28 0.00061 20.6 2.2 19 64-82 36-54 (54)
101 PF15099 PIRT: Phosphoinositid 41.9 8.8 0.00019 26.4 0.1 28 48-75 71-98 (129)
102 TIGR00753 undec_PP_bacA undeca 41.4 55 0.0012 24.5 4.2 40 34-73 83-126 (255)
103 PRK00281 undecaprenyl pyrophos 40.4 54 0.0012 24.7 4.1 39 34-73 89-131 (268)
104 PF13295 DUF4077: Domain of un 39.7 21 0.00046 24.9 1.7 43 28-71 23-65 (175)
105 PF07214 DUF1418: Protein of u 38.9 43 0.00093 21.9 2.9 30 43-72 22-56 (96)
106 PF07331 TctB: Tripartite tric 38.9 97 0.0021 19.9 4.7 20 55-74 36-55 (141)
107 COG1971 Predicted membrane pro 38.4 61 0.0013 23.6 4.0 40 36-75 44-88 (190)
108 KOG1443 Predicted integral mem 38.1 27 0.00058 27.7 2.2 43 36-78 118-160 (349)
109 PF11712 Vma12: Endoplasmic re 38.1 43 0.00093 22.5 3.0 40 28-67 78-122 (142)
110 PF02656 DUF202: Domain of unk 36.5 89 0.0019 18.2 5.2 20 54-73 42-61 (73)
111 PF11381 DUF3185: Protein of u 35.2 13 0.00028 22.2 0.0 18 58-75 1-18 (59)
112 PRK10591 hypothetical protein; 34.2 61 0.0013 21.1 3.1 30 43-72 22-56 (92)
113 TIGR01167 LPXTG_anchor LPXTG-m 34.2 66 0.0014 16.0 3.0 21 53-73 9-29 (34)
114 KOG1442 GDP-fucose transporter 33.9 16 0.00035 28.7 0.4 36 36-71 136-171 (347)
115 COG5070 VRG4 Nucleotide-sugar 33.8 37 0.00079 26.2 2.3 36 36-71 258-293 (309)
116 PRK06638 NADH:ubiquinone oxido 33.5 68 0.0015 22.8 3.5 35 43-77 133-169 (198)
117 COG1030 NfeD Membrane-bound se 33.3 81 0.0018 25.7 4.3 15 59-73 309-323 (436)
118 KOG1581 UDP-galactose transpor 32.9 85 0.0018 24.7 4.2 69 6-75 88-156 (327)
119 PF09838 DUF2065: Uncharacteri 32.8 58 0.0013 19.0 2.6 50 3-72 4-53 (57)
120 PF08507 COPI_assoc: COPI asso 32.5 93 0.002 20.6 3.9 29 43-72 75-103 (136)
121 COG2034 Predicted membrane pro 32.0 69 0.0015 20.6 3.0 22 57-78 14-35 (85)
122 PRK14774 lipoprotein signal pe 31.7 1.5E+02 0.0031 21.2 5.0 26 45-70 78-103 (185)
123 PLN03098 LPA1 LOW PSII ACCUMUL 31.6 81 0.0018 25.8 4.0 35 20-54 224-261 (453)
124 PF14329 DUF4386: Domain of un 31.5 1E+02 0.0022 21.5 4.1 32 41-73 145-176 (215)
125 KOG1443 Predicted integral mem 31.1 90 0.0019 24.8 4.1 33 40-72 281-313 (349)
126 PRK01100 putative accessory ge 30.9 2E+02 0.0044 20.6 6.5 40 6-46 67-106 (210)
127 KOG1580 UDP-galactose transpor 30.8 60 0.0013 25.2 3.0 39 37-75 120-158 (337)
128 PRK14782 lipoprotein signal pe 30.8 1.5E+02 0.0033 20.3 4.9 27 44-70 77-103 (157)
129 PF09527 ATPase_gene1: Putativ 30.2 1.1E+02 0.0023 17.1 4.0 35 35-70 10-44 (55)
130 KOG1441 Glucose-6-phosphate/ph 28.4 4.6 0.0001 31.2 -3.4 36 39-74 120-155 (316)
131 PF14927 Neurensin: Neurensin 28.4 58 0.0013 22.5 2.4 26 48-73 89-114 (140)
132 PF14126 DUF4293: Domain of un 28.2 77 0.0017 21.7 3.0 38 34-71 87-128 (149)
133 KOG1442 GDP-fucose transporter 28.0 12 0.00027 29.3 -1.1 65 6-73 260-326 (347)
134 KOG3457 Sec61 protein transloc 27.1 22 0.00047 23.0 0.1 34 11-47 42-78 (88)
135 PF04341 DUF485: Protein of un 26.9 33 0.00072 21.4 0.9 26 48-73 46-71 (91)
136 TIGR02840 spore_YtaF putative 26.8 1.1E+02 0.0025 21.8 3.8 24 50-73 54-80 (206)
137 TIGR03063 srtB_target sortase 26.1 1.1E+02 0.0023 15.8 2.6 19 55-73 8-26 (29)
138 PRK12933 secD preprotein trans 25.2 2.4E+02 0.0053 23.9 5.9 37 33-70 470-506 (604)
139 COG5120 GOT1 Membrane protein 24.5 96 0.0021 21.2 2.8 40 35-77 14-53 (129)
140 PF02659 DUF204: Domain of unk 24.3 1.5E+02 0.0033 17.0 3.4 13 56-68 55-67 (67)
141 PRK09577 multidrug efflux prot 24.2 1.4E+02 0.003 26.4 4.4 30 41-71 904-933 (1032)
142 PRK13664 hypothetical protein; 24.2 94 0.002 18.8 2.5 16 56-71 6-21 (62)
143 PRK12437 prolipoprotein diacyl 24.0 65 0.0014 23.9 2.1 19 54-72 235-253 (269)
144 PRK14791 lipoprotein signal pe 23.7 2.4E+02 0.0052 19.1 4.8 28 43-70 68-96 (146)
145 PRK00376 lspA lipoprotein sign 23.4 2.5E+02 0.0055 19.2 4.9 30 41-70 78-108 (160)
146 KOG1303 Amino acid transporter 23.1 98 0.0021 24.9 3.1 33 37-69 273-314 (437)
147 PF10288 DUF2392: Protein of u 23.1 31 0.00068 22.0 0.3 20 17-36 84-104 (107)
148 PRK14796 lipoprotein signal pe 22.9 2.5E+02 0.0055 19.3 4.8 25 45-70 81-105 (161)
149 PRK14770 lipoprotein signal pe 22.7 2.6E+02 0.0056 19.4 4.8 27 43-70 84-110 (167)
150 PF04156 IncA: IncA protein; 22.5 2.3E+02 0.005 19.3 4.6 33 40-72 19-53 (191)
151 COG1968 BacA Undecaprenyl pyro 22.4 1.4E+02 0.003 22.8 3.7 44 32-75 87-133 (270)
152 PRK14787 lipoprotein signal pe 22.3 2.3E+02 0.005 19.5 4.5 20 51-70 80-99 (159)
153 PRK14777 lipoprotein signal pe 21.6 2.8E+02 0.006 19.7 4.9 22 49-70 102-123 (184)
154 MTH00021 ND6 NADH dehydrogenas 21.3 1.6E+02 0.0036 20.8 3.7 34 43-76 131-166 (188)
155 PF03596 Cad: Cadmium resistan 21.3 3E+02 0.0065 19.8 5.0 31 44-75 44-78 (191)
156 PRK14768 lipoprotein signal pe 20.9 2.8E+02 0.0061 18.8 4.9 21 50-70 76-96 (148)
157 TIGR00304 conserved hypothetic 20.9 1.5E+02 0.0033 18.6 3.0 12 60-71 16-27 (77)
158 PRK14788 lipoprotein signal pe 20.4 2.9E+02 0.0063 20.0 4.8 28 43-70 72-102 (200)
159 TIGR03049 PS_I_psaK photosyste 20.4 1.7E+02 0.0037 18.6 3.2 48 5-52 17-65 (81)
160 PRK13108 prolipoprotein diacyl 20.2 1.1E+02 0.0023 25.0 2.8 27 54-80 254-282 (460)
No 1
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.62 E-value=1.1e-15 Score=105.12 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 3 RYGLVILFNVAMWGCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 3 ~~~l~~~~n~~mw~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
++++..+.++++|.+|++|||.++ |.++++|++|. +++++++++++||++|++.|+|+.+|.+|+++++++
T Consensus 69 flilSGla~glswl~Yf~ALk~G~as~VvPldk~sv--vl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~~ 140 (140)
T COG2510 69 FLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSV--VLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSLR 140 (140)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccH--HHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEecC
Confidence 567889999999999999999976 79999999995 999999999999999999999999999999988753
No 2
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=99.17 E-value=2.4e-10 Score=75.65 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCc
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIE 78 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~ 78 (84)
...+++=+....++.+|+|.-|-.+|...-.+++++.+++.|+++|||++|+.+++|+.+|+.|++.++..+++
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~~ 107 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRS 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45677778888999999999998899999999999999999999999999999999999999999999877543
No 3
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=99.17 E-value=1.8e-10 Score=75.81 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.++.+.+-++...++..++|.-|..+|...-. ++++.+++.|+++|||++|+++++|+.+|+.|+++++++
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~~ 110 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGST 110 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34556777888899999999988766666655 889999999999999999999999999999999998864
No 4
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=99.16 E-value=2.7e-10 Score=76.69 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCc
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIE 78 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~ 78 (84)
..+.+++=+.+..++.+|+|.-|-.+|...=.+++++.+++.|+++|||++|+.+++|+.+|+.|++.++..+++
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~ 107 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 356677888899999999999888888888888999999999999999999999999999999999999876543
No 5
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=99.13 E-value=3.2e-10 Score=75.22 Aligned_cols=75 Identities=23% Similarity=0.175 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777 3 RYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI 77 (84)
Q Consensus 3 ~~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~ 77 (84)
+..+++++=..++.+..+|+|.-|-.+|..+=.+++.+.+++.|+++|+|++|+.+++|+.+|++|++.++..++
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s~ 106 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGSR 106 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcCC
Confidence 456788899999999999999999899999999999999999999999999999999999999999999987653
No 6
>PRK11431 multidrug efflux system protein; Provisional
Probab=99.10 E-value=6.7e-10 Score=73.12 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI 77 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~ 77 (84)
...+++=+.++.+..+|+|.-|-.+|...=.++|.+.+++.|+++|||++|+++++|+.+|+.|++.++..+|
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~~ 105 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLSTH 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccCC
Confidence 4567777888999999999989889999999999999999999999999999999999999999999986654
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.04 E-value=1.1e-09 Score=80.57 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC--CCcccc
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS--SIEMKD 81 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~--~~~~~~ 81 (84)
+.+.++++...|.+|.+++|+.++..+++..... .++++++|+++|||++++..++|..+|+.|++..... .|.|-|
T Consensus 212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~-Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~ 290 (293)
T PRK10532 212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSME-PALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIK 290 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhH-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 4577899999999999999998776776666654 8999999999999999999999999999999987655 344557
Q ss_pred CCC
Q 034777 82 SID 84 (84)
Q Consensus 82 ~~~ 84 (84)
|.|
T Consensus 291 ~~~ 293 (293)
T PRK10532 291 EVD 293 (293)
T ss_pred CCC
Confidence 777
No 8
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.01 E-value=2.2e-09 Score=72.64 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHH--HhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFF--LFEEQLSFQWFAGALFIVVGVLILSKSSI 77 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~--~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~ 77 (84)
+.+.+++-++...++..+||+.|..+|... .+.+|+.+++.++. +|||++|+++++|+.+|++|+++++++++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~-~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPL-LSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 346678888999999999999775555433 24557888888885 89999999999999999999999997644
No 9
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.98 E-value=3.5e-09 Score=70.23 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
...++++=++++.+..+|+|.-|-.+|...=.+.|.+.+++.|+++|||++|+.+++|+.+|+.|++.++.
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl 108 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 34567777888999999999999889999999999999999999999999999999999999999999863
No 10
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.94 E-value=7.5e-09 Score=66.97 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCccc
Q 034777 8 ILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMK 80 (84)
Q Consensus 8 ~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~ 80 (84)
.+.....+.+|.-|++..++.++ .-.++++++++++|+++|||++++++|.|+.++.+|+++++.++.+.+
T Consensus 42 ~~~~~~~~~~~~~a~~~~~~~v~--~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~~ 112 (113)
T PF13536_consen 42 LLGFGVAYLLFFYALSYAPALVA--AIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTGA 112 (113)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 34445779999999999875333 444567999999999999999999999999999999999988765543
No 11
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.81 E-value=1.1e-08 Score=64.04 Aligned_cols=67 Identities=19% Similarity=0.429 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
+.++++...+.+|++|+|..+...+++... .+.+++.+++++++||++++++++|+.+++.|++++.
T Consensus 59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 59 LGLLGTALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhccceehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445568999999999999966544444433 3489999999999999999999999999999999875
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.79 E-value=1.8e-08 Score=73.95 Aligned_cols=73 Identities=21% Similarity=0.154 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEM 79 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~ 79 (84)
+.+.++...+.+|.+++|+.++..+++..... .+.+++.|++++||++++..++|..+|+.|+++++.+++.+
T Consensus 218 l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~-Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~~ 290 (292)
T PRK11272 218 LAVFGSIIAISAYMYLLRNVRPALATSYAYVN-PVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYLF 290 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678899999999999998877777776554 99999999999999999999999999999999998765543
No 13
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=98.75 E-value=2.8e-08 Score=63.33 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFI 65 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lI 65 (84)
..+.+.+-+....++.+|+|+-|..+|...-.+.+++.+++.|.++|||++|+.+++|+.+|
T Consensus 32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34567788899999999999999888888888999999999999999999999999999986
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.68 E-value=6.6e-08 Score=71.20 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEM 79 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~ 79 (84)
....++.+.+.+|.+++|+.++.++++.... +.++++++|++++||++++..++|.++|+.|+++...+.+++
T Consensus 220 ~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l-~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~ 292 (295)
T PRK11689 220 LAAAAMGFGYAAWNVGILHGNMTLLATASYF-TPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK 292 (295)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHh-HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence 3346789999999999999776665555544 389999999999999999999999999999998876655444
No 15
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.67 E-value=7.7e-08 Score=73.96 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 9 LFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 9 ~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.++.+.+.++.+++|..++.++++..... .++++++|++++||++++..++|.++|+.|+.+..++
T Consensus 264 i~t~lay~lw~~~v~~~ga~~as~~~~L~-PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 264 IITSVYYVIHSWTVRHKGPLYLAIFKPLS-ILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHhHH-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 45678899999999986655555554443 8999999999999999999999999999999998865
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.66 E-value=1.6e-07 Score=68.46 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.+....+...+.++++|+|..++..+++.+... .++++++|+++|||++++++|+|+.+++.|++++..+
T Consensus 67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 67 AISAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 445667889999999999998766666555543 8999999999999999999999999999999988754
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.62 E-value=9.1e-08 Score=70.48 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 7 VILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 7 ~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
...++...+.+|++|+|..++..+.+..... .+++.+.|++++||++++..+.|.++|+.|+.++..+
T Consensus 219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~-Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIG-PTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999997765555555543 8999999999999999999999999998887765544
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.62 E-value=2.3e-07 Score=67.65 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCc-eeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 034777 5 GLVILFNVAMWGCYINSLRVLSS-LQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLIL 72 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s-~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll 72 (84)
.+..+++...+.+|++++|..+. ..++...+. .+++.++|++++||+++++.++|..+|+.|++++
T Consensus 215 ~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~--pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 215 TLGGLMIGGAYALVLWAMTRLPVATVVALRNTS--IVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCceEEEeecccH--HHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 34567788999999999999664 555555444 7999999999999999999999999999999864
No 19
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.53 E-value=2.6e-07 Score=65.40 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGV 69 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv 69 (84)
+.+..+++...+.+|++|+|+.++..+++..... .+.+++++++++||++++.++.|..+++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~-pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 195 LYLGLIGTALAYFLWNKGLTLVDPSAASILALAE-PLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 3456677899999999999997766666655543 8999999999999999999999999999996
No 20
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.52 E-value=5.3e-07 Score=63.84 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~ 76 (84)
.+...+..+.+.+|+.|++..++..+++.. +...+++++++++++||+++++++.|+.+.+.|++++..++
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~-~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~ 121 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLL-YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG 121 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHH-hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC
Confidence 344566789999999999997766665553 33489999999999999999999999999999999987654
No 21
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.52 E-value=4.2e-07 Score=66.93 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.+.++++...+.+|.+++|+.+...++.... +..++++++|++++||++++..++|..+|+.|+.+...+
T Consensus 219 ~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 219 YLAFVATIVGYGIWGTLLGRYETWRVAPLSL-LVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 3457889999999999999866545554443 458999999999999999999999999999999987554
No 22
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.47 E-value=6.6e-07 Score=64.14 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
.+..++-...|.+|+.|+|..+...|++.-. .+.+++++++++++|||++.++|+|+.+-+.|++++..
T Consensus 74 ~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 74 LLCGLLIGFNWWLFIWAVNNGSSLEVSLGYL-INPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455567788999999999988777777755 46999999999999999999999999999999998754
No 23
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.47 E-value=2e-07 Score=68.33 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=55.0
Q ss_pred HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcccc
Q 034777 16 GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKD 81 (84)
Q Consensus 16 ~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~ 81 (84)
..++.++|+.++.++++... ...++++++|+++|||++++..++|..+++.|+.+.++..++|+|
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~-l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNC-MKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred HHHHHHHccCCchHHHHHhh-hhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 35668899988777777744 458999999999999999999999999999999999887666654
No 24
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.40 E-value=1.3e-06 Score=64.39 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
+...+.+..|.+|+.|++..++..+++.... +.+.+++++++++||+++.++|+|+.+-++|++++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~-~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFI-NPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3455667789999999999988888888765 4999999999999999999999999999999998753
No 25
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.38 E-value=1.3e-06 Score=58.41 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 4 YGLVILFNVAMWGCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
+..-++.|..+-..|+-.|++.| |...|+.| |++|++|++.|+++.+|..+++.++|+.+|+.|+.+
T Consensus 44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~N-sl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIAN-SLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeehHHh-HHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 44557889999999999999977 66666665 455999999999999999999999999999999875
No 26
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.30 E-value=4.6e-06 Score=58.60 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
..++...+++.+|+++++..+...++... ....+.+.+.++++++|++++..++|..+|+.|+++.+.+
T Consensus 220 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 220 LGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 34455558999999999997665555544 3347788888999999999999999999999999998876
No 27
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.16 E-value=7.5e-06 Score=60.04 Aligned_cols=70 Identities=16% Similarity=0.043 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
+....++++....+...+++..+...+++.+.. +.++++++++++++|+++.++++|+.+.+.|+.+...
T Consensus 68 ~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~-~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 137 (302)
T TIGR00817 68 LLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAM-EPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc-chHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC
Confidence 345666778888899999999887777777744 4899999999999999999999999999999987653
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.13 E-value=7.2e-06 Score=60.83 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=61.1
Q ss_pred HHHHHHHHH----HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHHccC
Q 034777 7 VILFNVAMW----GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQW----FAGALFIVVGVLILSKS 75 (84)
Q Consensus 7 ~~~~n~~mw----~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~----~~G~~lIi~Gv~ll~~~ 75 (84)
.......+| .+|+.|.|......+.......+++.+++.|.++|||+.+.++ ++|+.+++.|+++++..
T Consensus 61 ~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 61 VGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 345556669 9999999998878888888888899999999999999999999 99999999999998765
No 29
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.08 E-value=1.9e-05 Score=58.16 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhccc-CceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 11 NVAMWGCYINSLRVL-SSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 11 n~~mw~~y~kaL~~~-~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
....+.+|+.+++.+ ++..+.+. ...+.+.+.+++++++||+++.++++|+.+.++|+.++...
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLV-LQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 345666788898874 66666655 44668999999999999999999999999999999988754
No 30
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.05 E-value=1.9e-05 Score=55.43 Aligned_cols=75 Identities=21% Similarity=0.132 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGF-FLFEEQLSFQWFAGALFIVVGVLILSKSSIEM 79 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~-~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~ 79 (84)
...........+.+|+.+++..+...+++..... .+.++++++ ++++|++++++|.|+.+...|++++.+.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 73 LLLALLGLALPFLLLFLALKYTSASVASLIIGLL-PLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 3445677888899999999987766666665544 789999997 66699999999999999999999998875543
No 31
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.03 E-value=1.5e-05 Score=59.20 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhc-ccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHHHcc
Q 034777 7 VILFNVAMWGCYINSLR-VLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWF----AGALFIVVGVLILSK 74 (84)
Q Consensus 7 ~~~~n~~mw~~y~kaL~-~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~----~G~~lIi~Gv~ll~~ 74 (84)
.++++.....+|+.+++ ..++..+++.+... .+.+++.++++|||+.+++.+ +|..+|+.|+++++.
T Consensus 217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~-pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLG-VIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHcccccchhhHHHHHHHH-HHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 55557888899999999 77888888888776 999999999999999999999 999999999998764
No 32
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.88 E-value=4.8e-05 Score=57.87 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHH----HhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 7 VILFNVAMWGCYIN----SLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 7 ~~~~n~~mw~~y~k----aL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.++++++.+.+|.. ++++.+...+++.+.. -.+++.++|+++|||++++.+++|.++++.|+++-+..
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~l-k~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTL-KRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH-HHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 35567777777775 8888888888888874 48899999999999999999999999999999987653
No 33
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.88 E-value=4.8e-05 Score=57.88 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777 7 VILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 7 ~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
..+|+.........|++..+...+++.+. .+.++++++++++++|+++.+.++|+.+++.|+.+.+.
T Consensus 120 ~gl~~~~~~~~~~~sl~~~svs~~~iika-~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 120 QGLCHLFVHFGAVISMGLGAVSFTHVVKA-AEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHH-hhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 34444433444558888887777777777 56999999999999999999999999999999999874
No 34
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.78 E-value=8.4e-05 Score=57.26 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHcc
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFL------FEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~------f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
+++..+++.....+|+.++|..++..|++.+.. +.++++++++++ ++|++++.+++|+.+=++|+.++..
T Consensus 81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~-~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNI-TPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHh-hHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 344555555566678999999888888877544 499999999999 7999999999999999999998654
No 35
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.56 E-value=0.00049 Score=50.68 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhccc----CceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 10 FNVAMWGCYINSLRVL----SSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 10 ~n~~mw~~y~kaL~~~----~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.....+.+++.+++.. ++..+.+.+ +.+.+++.+++++++||++++++|+|+.+-.+|++++...
T Consensus 70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~-~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 70 LFVSYEICLALSLGYANTRRQAIEVGMVN-YLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHH-HHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 3445566677788653 233333332 3458999999999999999999999999999999988654
No 36
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.55 E-value=0.00044 Score=51.21 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEM 79 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~ 79 (84)
.+..+++..+-.+.+.-.++.+++..++..+. .-.++.+++..+|++++++..|.|+.++..|..+=+...++|
T Consensus 229 ~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~-Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 229 LLFSLTGALGQFFIFYLIKKFSALTTTIVTTL-RKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhHHHH-HHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 34556666666666666777665554444433 268899999999999999999999999999999877654443
No 37
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.46 E-value=0.0008 Score=51.94 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=49.7
Q ss_pred HHHHHHHHHH---HHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777 9 LFNVAMWGCY---INSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76 (84)
Q Consensus 9 ~~n~~mw~~y---~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~ 76 (84)
.....+..+| --.++.+++...++ ++......+.+++.++|||+.++..++|.++|+.|+++.+..+
T Consensus 238 ~~~~~lf~~y~l~p~~l~~ssAt~~nL-sLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 238 GYALCLFLFYSLVPIVLRMSSATFFNL-SLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceeeh-HHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 3344445555 33456666555554 4455567889999999999999999999999999999987653
No 38
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.38 E-value=0.00068 Score=50.17 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~ 76 (84)
+....+++..+-.+-..||+.-|-..-++.+.+ ..+.+.++|++++|++.+.++++++.++.+|+++....+
T Consensus 67 ~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~-~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~ 138 (303)
T PF08449_consen 67 YAILSFLFFLASVLSNAALKYISYPTQIVFKSS-KPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSD 138 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhh-HHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecc
Confidence 344556777777777889988554333344433 379999999999999999999999999999999876553
No 39
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.36 E-value=0.0011 Score=48.65 Aligned_cols=61 Identities=16% Similarity=0.013 Sum_probs=46.6
Q ss_pred HHHHHHHHHh-cccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 13 AMWGCYINSL-RVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 13 ~mw~~y~kaL-~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
....+|+-+. +..++..+++... .+.+++++++++ +||+++.++|+|+.+-++|+.++..+
T Consensus 81 ~~~~~~~~~~~~~~~a~~a~~l~~-~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 81 VGNGMVTVAEHQNVPSGIAAVVVA-TVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHH-HHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 3344555566 5566655655544 468999999975 79999999999999999999998754
No 40
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.34 E-value=0.00039 Score=51.06 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCc
Q 034777 18 YINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIE 78 (84)
Q Consensus 18 y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~ 78 (84)
.+-+++.-|+.+-.+.+-+ -++.|++++++++|++++.++|.++.+++.|+.+.+.++..
T Consensus 34 ~~~al~~ld~~t~qvl~q~-kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 34 QFVALSYLDPSTFQVLSQS-KILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHhCCHHHHHHHHhh-HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3456777554444455443 47999999999999999999999999999999998777444
No 41
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.34 E-value=0.0011 Score=43.60 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=43.4
Q ss_pred HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 16 GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 16 ~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
..-+..++..+++..+|.+.. .-+.+.++|+++|+|++|++.+.|+.+.+.|+++
T Consensus 96 ~~~f~~i~~tS~lt~~v~~~~-K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 96 LSSFLLIKLTSPLTYSVLGNV-KRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHhhhcChhHHHHHHHH-HHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 334455666666666666554 3678899999999999999999999999999875
No 42
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.31 E-value=0.00088 Score=51.71 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~ 76 (84)
.++.++-...=.+..+|++..+-..+++.+... +..+.++++++++||.++.+++|+.+.+.|+.++...+
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~-i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTS-IPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhh-hHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 344445555556677888887766666666443 79999999999999999999999999999999876553
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.16 E-value=0.0037 Score=47.30 Aligned_cols=72 Identities=25% Similarity=0.360 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhcccCc-eeeeehhhhHHHHHHHHHHHHHhccc--ccH----HHHHHHHHHHHHHHHHccCCCc
Q 034777 6 LVILFNVAMWGCYINSLRVLSS-LQATVTNFATNFLSSGLAGFFLFEEQ--LSF----QWFAGALFIVVGVLILSKSSIE 78 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s-~~ati~~~s~n~v~t~l~g~~~f~E~--l~~----~~~~G~~lIi~Gv~ll~~~~~~ 78 (84)
.+..|...--.+..||||..|+ .+.|+..... ...+.+.|..+|+|- .++ .-.+|...++.|+++++.+.++
T Consensus 218 ~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~-t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~ 296 (300)
T PF05653_consen 218 VLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFF-TLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDK 296 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEeehhHHH-HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCch
Confidence 3444555555566679999665 5555554444 567788888999984 444 3467899999999999876443
No 44
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.16 E-value=0.003 Score=47.76 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=52.6
Q ss_pred HHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHHccCCCcccc
Q 034777 14 MWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQW----FAGALFIVVGVLILSKSSIEMKD 81 (84)
Q Consensus 14 mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~----~~G~~lIi~Gv~ll~~~~~~~~~ 81 (84)
.=..-++|.|.-...++.-++++...+.+++.|.++|||--+... .+++++|++|+++-+.+++++++
T Consensus 58 Gq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 58 GQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 334567888886666777788999999999999999999555433 34678999999998887665543
No 45
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.10 E-value=0.00057 Score=51.66 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=46.8
Q ss_pred HHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 16 GCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 16 ~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
..-+-|+...| +.++|.-..+ .+.+++++.+++||+++.+-+.|..+++.|..++...
T Consensus 65 ~~~~~Al~~ap~slv~Plg~~~--lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 65 ILNFVALGFAPASLVAPLGALS--LVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHHHHHHhhhHHHHHHHHhhh--hhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 34445666665 5777776655 6999999999999999999999999999999976544
No 46
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.88 E-value=0.00073 Score=52.15 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 9 LFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 9 ~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
-++++|-.|| |++..+-.-|+++.++. .+++.+++|.+++|+.|+...+|...-+.||+++.|.
T Consensus 107 G~tgvmlmyy--a~~~mslaDA~vItFss-Pvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 107 GFTGVMLMYY--ALMYMSLADAVVITFSS-PVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred hhhHHHHHHH--HHhhcchhheEEEEecC-hHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 3456665555 45665555667777765 8999999999999999999999999999999999876
No 47
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.41 E-value=0.0011 Score=46.79 Aligned_cols=61 Identities=26% Similarity=0.378 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 034777 8 ILFNVAMWGCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 8 ~~~n~~mw~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
+++|+..-.+..-.+|..+ .....+. +.+.++++++++++|||++++..|.|+.++..|+.
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~--~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVT--ALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHH--HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 3444444444444444433 3333333 44579999999999999999999999999998864
No 48
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.38 E-value=0.014 Score=44.54 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCc-eeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 034777 3 RYGLVILFNVAMWGCYINSLRVLSS-LQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 3 ~~~l~~~~n~~mw~~y~kaL~~~~s-~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
.+++.++..++.|.+=--||+.-|. .-++.. |+-..+.++.|+.++||.+|+.+|+|+.+|+.+..
T Consensus 212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~Ll--SLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLL--SLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHhcccchHHHHHHHhhCChhHHHHHH--HhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 4556677888889888889988653 444443 44589999999999999999999999999999887
No 49
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.45 E-value=0.058 Score=41.46 Aligned_cols=65 Identities=26% Similarity=0.292 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777 8 ILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 8 ~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
.+.=...|..|.=|...+....|+.-=. +|..++.++|.++|||++++.+|+-+.+-.+||....
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~-InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~ 143 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYF-INPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT 143 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 3344556888888888776555543332 4678899999999999999999999999999998643
No 50
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=95.39 E-value=0.045 Score=37.09 Aligned_cols=63 Identities=27% Similarity=0.291 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhcccC-ceeeeehhhhHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHH
Q 034777 8 ILFNVAMWGCYINSLRVLS-SLQATVTNFATNFLSSGLAGFFLFEEQL-SFQWFAGALFIVVGVLIL 72 (84)
Q Consensus 8 ~~~n~~mw~~y~kaL~~~~-s~~ati~~~s~n~v~t~l~g~~~f~E~l-~~~~~~G~~lIi~Gv~ll 72 (84)
++.|...-..|+--|+..+ |+..++.| |+.|++++.+|..+ ||+. --+..+|+.+++.|+.+.
T Consensus 59 FllNqcgSaly~~tLa~a~islavpv~n-sltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 59 FLLNQCGSALYYLTLASAPISLAVPVTN-SLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHhhHHHHHHHHhcCCceeeeeecc-hhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence 6778888899999998876 66666666 45599999999776 6655 456789999999999874
No 51
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.0047 Score=47.06 Aligned_cols=70 Identities=21% Similarity=0.417 Sum_probs=52.9
Q ss_pred HHHHHHHHHH----HHHHhcccCceeeeehhhhHHHHHHHHHHHHHhccccc-HHHHHH---HHHHHHHHHHHccCCC
Q 034777 8 ILFNVAMWGC----YINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLS-FQWFAG---ALFIVVGVLILSKSSI 77 (84)
Q Consensus 8 ~~~n~~mw~~----y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~-~~~~~G---~~lIi~Gv~ll~~~~~ 77 (84)
.+....-|.+ =+||++.....+|.-.+++.-.+.+.++|.+.|||=-+ .+..+| +++|+.|+.+-+.+++
T Consensus 62 ~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 62 GFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred HHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 3444555543 57888887778888889999999999999999999544 445555 5688889988777654
No 52
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.95 E-value=0.098 Score=40.77 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHHcc
Q 034777 12 VAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQL-------SFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 12 ~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l-------~~~~~~G~~lIi~Gv~ll~~ 74 (84)
+..=..+.+++|.-.-..+.-+++++-.++.++++.++|||=- -..-.+|++++++|+++.+.
T Consensus 84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3344578899998666667777888889999999999999732 23467899999999999988
No 53
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.0095 Score=46.43 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC-CCccc
Q 034777 3 RYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS-SIEMK 80 (84)
Q Consensus 3 ~~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~-~~~~~ 80 (84)
+...|++-++.-+..|.=| -.+++++.-..| ++.+++++..+++|++++.-.+|..+.++|-.++-.. +||+|
T Consensus 70 G~ltm~vGei~NFaAYaFA---PasLVtPLGAls--vi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFA---PASLVTPLGALS--VIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHHHHHHHhHhhHHHHhhc---hHhhhccchhHH--HHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 4556777777777777632 235677777777 5999999999999999999999999999999976554 44443
No 54
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.87 E-value=0.012 Score=44.13 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=54.9
Q ss_pred HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCccccCC
Q 034777 16 GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKDSI 83 (84)
Q Consensus 16 ~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~~~ 83 (84)
..|.+||++-+...++-. +..|-.++-++++.++|++....+.+...+-+.|+++++..++|.+.|+
T Consensus 68 Y~Yl~AL~~is~s~asai-~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~ 134 (290)
T KOG4314|consen 68 YLYLLALKKISASDASAI-FACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEI 134 (290)
T ss_pred cHHHHHHHhcChhhhHHH-HHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhh
Confidence 368999998654444443 3567788889999999999999999999999999999998888876653
No 55
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.55 E-value=0.3 Score=37.55 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
+..+|.++.=.|-++-..+-+.+.++|..+-= =.++.+++.++|+.++++++|+|..++..|+..
T Consensus 246 l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTR-KfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 246 LLAIASCLGQWFIFKTVEEFGPLTCSIVTTTR-KFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCeeEEEEeehH-HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 34455555555555555553334444443322 367899999999999999999999999999886
No 56
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.55 E-value=0.13 Score=39.50 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 3 RYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 3 ~~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.+.+.+..|++...+|..|-|.-|-.+--+..- ....+..+.|.++|||+++.-++..-++|-.|+++.+.+
T Consensus 213 LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqY-i~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 213 LLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQY-IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999998865221111221 225667889999999999999999999999999987766
No 57
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=93.74 E-value=0.48 Score=37.23 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=45.3
Q ss_pred HHHHHhcccCceeeeeh-hhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777 17 CYINSLRVLSSLQATVT-NFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 17 ~y~kaL~~~~s~~ati~-~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
.++-++...|+.+-.|+ ++- +..|+++..++++++++.++|.-..+...|+.+.+
T Consensus 108 l~yval~~ldaatyqVt~qlK--I~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 108 LQYVALSNLDAATYQVTYQLK--ILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHhcCCchhhhhhhhHH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 56667777665444444 334 58899999999999999999999999999999998
No 58
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=93.05 E-value=0.15 Score=39.91 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 39 FLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 39 ~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
++++.+++.-+++.++++.+|+|+..+++|++.+...
T Consensus 123 iIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 123 IIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred hhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 6899999999999999999999999999999976543
No 59
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=92.22 E-value=0.49 Score=36.85 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhcc----cCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 7 VILFNVAMWGCYINSLRV----LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 7 ~~~~n~~mw~~y~kaL~~----~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.+.+|++-=.+=.|+.-. .+|+..|++-+-= =.++.+++...|+.+.+++.|+|..++..|.++-+..
T Consensus 244 yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlR-KFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 244 YLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLR-KFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHH-HHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356666665555565532 3455555543322 2467889999999999999999999999999986544
No 60
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.96 E-value=0.1 Score=41.76 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=46.5
Q ss_pred HHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 16 GCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 16 ~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.+|-.||+..+..--||.+... -.++.++|..+-+|++|+.+.++.++=+.|+++++..
T Consensus 174 l~~naALa~TsVAS~TilSStS-s~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765|consen 174 LTSNAALAFTSVASTTILSSTS-SFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred HHHHHHhhhhhhhhhhhhhhcc-hHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence 3577788876655555665443 3677888888889999999999999999999998876
No 61
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=91.75 E-value=2.4 Score=29.60 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCccccCC
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKDSI 83 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~~~ 83 (84)
+++..+++.....++.+ .-.+.+++++.+.-+..+++.+--.+++.+..|+.++..=+.+.=...++||.|.
T Consensus 54 ~~ll~~~T~G~~~~lm~--------~kgi~rm~lG~~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QRS~ 125 (144)
T PF01350_consen 54 VVLLGVMTLGVFWFLMR--------RKGIGRMSLGMLVMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQRSQ 125 (144)
T ss_pred HHHHHHHHHHHHHhhhc--------CCCcchhhHHHHHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCcCCc
Confidence 34455555554444432 2347789999999999999999999999999999999887776666677777654
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.62 Score=36.51 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccc-CceeeeehhhhHHHHHHHHHHHHHhcc--cccHH----HHHHHHHHHHHHHHHccC
Q 034777 3 RYGLVILFNVAMWGCYINSLRVL-SSLQATVTNFATNFLSSGLAGFFLFEE--QLSFQ----WFAGALFIVVGVLILSKS 75 (84)
Q Consensus 3 ~~~l~~~~n~~mw~~y~kaL~~~-~s~~ati~~~s~n~v~t~l~g~~~f~E--~l~~~----~~~G~~lIi~Gv~ll~~~ 75 (84)
++..+..|...-..+--|||+.. .+.+.|+--.-. .-++.+.|...|+| ..+.. -.+|...++.|++++++.
T Consensus 229 ~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~f-Ttl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~ 307 (335)
T KOG2922|consen 229 FLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMF-TTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRT 307 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHH-HHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeee
Confidence 34455666666667778999995 456666654433 56777888899998 44443 467889999999999765
No 63
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=89.76 E-value=1.2 Score=32.74 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777 8 ILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 8 ~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
..+......+++.|+|..++..+++.... +.+.+++++ +|+. .++.++.+.++|+.++..
T Consensus 78 g~~~~~~~~~~~~al~~~~~~~a~~l~~t-~Pi~~~ll~----~~~~--~~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 78 GVSLGGMNYLFYLSIQTVPLGIAVALEFT-GPLAVALFS----SRRP--VDFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHHHHh----cCCh--HHHHHHHHHHHHHheeee
Confidence 34566677788899999887777766643 467776665 2543 456777888999988754
No 64
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=89.46 E-value=0.48 Score=31.71 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 034777 40 LSSGLAGFFLFEEQLSFQWFAGALFIVVGVLIL 72 (84)
Q Consensus 40 v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll 72 (84)
.+-+.++.+.+||++++....|..+++.++..+
T Consensus 74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred heeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 344677889999999999999999999988754
No 65
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=89.11 E-value=0.38 Score=36.44 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=36.5
Q ss_pred HHHHHhcc-cCceeeeehhhhHHHHHHHHHHHHHhcccccHH----HHHHHHHHHHHHHH
Q 034777 17 CYINSLRV-LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQ----WFAGALFIVVGVLI 71 (84)
Q Consensus 17 ~y~kaL~~-~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~----~~~G~~lIi~Gv~l 71 (84)
+|+-|.+. +.+.--+..-++ .+.+++-|.++|||+=+.+ .++|..+|+.|.++
T Consensus 211 ~~~is~~~~G~a~af~lSQ~~--vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 211 FYLISAQKNGVATAFTLSQLG--VVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHhHHhccchhhhhHHhHH--HHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 45555555 323333333334 7999999999999987765 56788999888765
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=88.24 E-value=3 Score=32.63 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=42.7
Q ss_pred HHHHHHhcccCceeeee---hhhhHHHHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHccC
Q 034777 16 GCYINSLRVLSSLQATV---TNFATNFLSSGLAGFFLFEEQLS------FQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 16 ~~y~kaL~~~~s~~ati---~~~s~n~v~t~l~g~~~f~E~l~------~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.+|.-+-+......+.+ ...+.+.+++++-|. ++||.=+ ..-++|.++++.|.+++...
T Consensus 275 ~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 275 FFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 34555444433333334 666777888999897 5999877 56699999999999998765
No 67
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.32 E-value=3.6 Score=32.05 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=46.9
Q ss_pred cccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777 23 RVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76 (84)
Q Consensus 23 ~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~ 76 (84)
|..|++.-|+.- ..|-..+.+.+.++++++.++...+|+.+=+.|-++=+...
T Consensus 250 ~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 250 RVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred hhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 567888888888 99999999999999999999999999999888888776664
No 68
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=84.81 E-value=4.8 Score=31.60 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=38.5
Q ss_pred cCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 25 LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 25 ~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
+....|||+..- =.+|.++++++|..++|.|..-|..+++.|+.+
T Consensus 285 GA~~aatvTTaR--KavTi~lSfllFsKPfT~qy~~~gllv~lgI~L 329 (367)
T KOG1582|consen 285 GALIAATVTTAR--KAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYL 329 (367)
T ss_pred chhHHHHHHHhH--hHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHh
Confidence 344667777666 378899999999999999999999999999986
No 69
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=84.02 E-value=0.51 Score=36.44 Aligned_cols=40 Identities=18% Similarity=0.406 Sum_probs=33.7
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcccc
Q 034777 42 SGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMKD 81 (84)
Q Consensus 42 t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~ 81 (84)
....|+++|+|++|+...+|+++=+.|+++=++....+++
T Consensus 275 vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 275 VIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred EEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3456889999999999999999999999998887555443
No 70
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.89 E-value=2.5 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777 40 LSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 40 v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
..=+.++.+.++|++.+..+.|..+|..|+.++=+
T Consensus 81 ~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 81 AIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 33467889999999999999999999999987643
No 71
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=81.48 E-value=5.6 Score=31.33 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777 35 FATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI 77 (84)
Q Consensus 35 ~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~ 77 (84)
.++.++++++.++.+|+-++|..-.+|+.+++..+.+=+..++
T Consensus 283 ~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 283 TSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred HHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 3556799999999999999999999999999999999885544
No 72
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.52 E-value=2.7 Score=29.40 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=21.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHccCCC
Q 034777 52 EQLSFQWFAGALFIVVGVLILSKSSI 77 (84)
Q Consensus 52 E~l~~~~~~G~~lIi~Gv~ll~~~~~ 77 (84)
.++++++++|++++++|++++.++.+
T Consensus 124 ~~~~~~r~lgi~L~l~gil~~~~~~~ 149 (150)
T COG3238 124 RPLNLPRILGILLVLAGILLARRFGA 149 (150)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccccc
Confidence 58999999999999999777766543
No 73
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=78.07 E-value=1.5 Score=30.76 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=35.8
Q ss_pred eeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777 29 QATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 29 ~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
.+.+..-+.+.+.+++.++..++|+.+..+++.++++..|++.-.
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ 49 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVAS 49 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhH
Confidence 344455566778889999999999999999999999999987533
No 74
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=78.00 E-value=3.1 Score=25.74 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHccCCCccc
Q 034777 58 WFAGALFIVVGVLILSKSSIEMK 80 (84)
Q Consensus 58 ~~~G~~lIi~Gv~ll~~~~~~~~ 80 (84)
-.+|+++|++|-++|+.+..+.+
T Consensus 11 l~iG~~vIilGfilMsg~~s~dp 33 (69)
T PF11297_consen 11 LAIGIAVIILGFILMSGGGSDDP 33 (69)
T ss_pred HHHHHHHHHHHHHheeCCCCCCc
Confidence 35799999999999998866554
No 75
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=76.39 E-value=5.3 Score=28.40 Aligned_cols=43 Identities=14% Similarity=-0.025 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHH
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFL 49 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~ 49 (84)
+..+++...+.+|.+|+|+-|+.++.+..... .+.++++|.++
T Consensus 213 ~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~-Pv~~~~~~~~~ 255 (256)
T TIGR00688 213 LAGLITGTPLLAFVIAANRLPLNLLGLLQYIG-PTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHHHHHHHHh
Confidence 44556889999999999997654444444433 88888888764
No 76
>PRK02237 hypothetical protein; Provisional
Probab=75.45 E-value=8.1 Score=25.89 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777 39 FLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76 (84)
Q Consensus 39 ~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~ 76 (84)
++.+.+-++++-|++++..-++|..+.++|+.++-..+
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 34556889999999999999999999999998775443
No 77
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=75.20 E-value=10 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=18.8
Q ss_pred cccccHHHHHHHHHHHHHHHH
Q 034777 51 EEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 51 ~E~l~~~~~~G~~lIi~Gv~l 71 (84)
++++++.+.+|+.+++.|+++
T Consensus 118 ~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 118 KRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred CCCCCHHHHHHHHHHHHHHhC
Confidence 468999999999999999874
No 78
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=74.30 E-value=10 Score=29.57 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHH----HHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCccc
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSS----GLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMK 80 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t----~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~ 80 (84)
+.+.+...|+.+|.-+=-.-...-||..|.|+ .-+ .+. ..||-+.+|...+-.+.|+.|.++-+.+.++|+
T Consensus 231 ~yl~f~L~MFllYsl~pil~k~~~aT~~nlsl--LTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~ 305 (336)
T KOG2766|consen 231 LYLRFALTMFLLYSLAPILIKTNSATMFNLSL--LTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEE 305 (336)
T ss_pred HHHHHHHHHHHHHHhhHHheecCCceEEEhhH--hHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcH
Confidence 33445566777776542112223456666663 222 222 678888999999999999999999876644433
No 79
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=73.62 E-value=2.4 Score=33.15 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhcc-cCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 6 LVILFNVAMWGCYINSLRV-LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~-~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
+.-.|++++=.|-+--++. ++-+-++|+.+-= .++..++.+.|+.+++..+|.|+..+..|+.+
T Consensus 246 l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk--~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 246 LYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRK--MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHhhhhhhheehhhHhhcccHHHHHHHHHHH--HHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 4455666665554444554 6656666666653 67788899999999999999999999999874
No 80
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=72.67 E-value=3.7 Score=32.08 Aligned_cols=65 Identities=9% Similarity=0.110 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 10 FNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 10 ~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
+....=.+-++++|...+-...+.+..= .+...+.-..+|||-.|+.-|+|+++|+...+.....
T Consensus 262 fgfigQIllTm~lQiErAGpvaim~~~d-vvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 262 FGFIGQILLTMGLQIERAGPVAIMTYTD-VVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred hhhHHHHHHHHHhhhhccCCeehhhHHH-HHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence 3344556788999876554444444332 5778888899999999999999999999988865543
No 81
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=72.22 E-value=4.7 Score=29.52 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHH
Q 034777 7 VILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALF 64 (84)
Q Consensus 7 ~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~l 64 (84)
.++.|+.+-..-.-.+|..++.. --...+.+.++++++++++|+.++|..-.+|..+
T Consensus 187 ~i~~~a~gGllva~v~KyadnI~-K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 187 VIFLQAIGGLLVAFVLKYADNIV-KGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHhhHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 34455555555555556544321 1123456689999999999999999999999765
No 82
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=68.35 E-value=12 Score=24.95 Aligned_cols=73 Identities=21% Similarity=0.093 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCce---eeeeh--------------hh--------hHHHHHHHHHHHHHhcccccHHH
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSL---QATVT--------------NF--------ATNFLSSGLAGFFLFEEQLSFQW 58 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~---~ati~--------------~~--------s~n~v~t~l~g~~~f~E~l~~~~ 58 (84)
+.+..+|-.....++.+-||++.+. ..-.. ++ +.=++.+.+-++++-|++++..-
T Consensus 8 F~lAalaEIgG~yl~W~wlR~~k~~~~~~~G~~~L~lfg~l~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D 87 (107)
T PF02694_consen 8 FVLAALAEIGGCYLVWLWLREGKSPWWLLPGALSLALFGWLLTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWD 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeeeHhhHHHHHHHHHHHhhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHH
Confidence 4455667777777777777775431 11111 11 23346677889999999999999
Q ss_pred HHHHHHHHHHHHHHccCC
Q 034777 59 FAGALFIVVGVLILSKSS 76 (84)
Q Consensus 59 ~~G~~lIi~Gv~ll~~~~ 76 (84)
++|..+.+.|+.++-..+
T Consensus 88 ~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 88 WIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHhHHHHHHhHHheEecC
Confidence 999999999999876554
No 83
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=67.08 E-value=21 Score=22.27 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhccc
Q 034777 12 VAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQ 53 (84)
Q Consensus 12 ~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~ 53 (84)
.....+..|.+. ++.+.-+.-|++++....+++++++..|+
T Consensus 34 iG~~i~~~rl~a-~~~l~~~l~nlaI~igava~~~~L~~~d~ 74 (75)
T PF11998_consen 34 IGLFIFLFRLIA-GPDLNEALPNLAIQIGAVALFAFLFRWDR 74 (75)
T ss_pred HHHHHHHHHHHc-CccHHHHhhhHhHHHHHHHHHHHHHHHhc
Confidence 334444555555 56666788899999999999999998874
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=58.87 E-value=1.6 Score=33.46 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=36.0
Q ss_pred eeeeehhhh-HHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHHcc
Q 034777 28 LQATVTNFA-TNFLSSGLAGFFLFEEQLSFQW----FAGALFIVVGVLILSK 74 (84)
Q Consensus 28 ~~ati~~~s-~n~v~t~l~g~~~f~E~l~~~~----~~G~~lIi~Gv~ll~~ 74 (84)
-+||-.++| .+.+.+++-|.++++|+=|.+. +.|+.+|+.|.+++..
T Consensus 234 GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 234 GVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred ceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 355555443 3468889999999999988876 4689999999988764
No 85
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=58.31 E-value=9.6 Score=23.71 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.7
Q ss_pred ceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHH
Q 034777 27 SLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGAL 63 (84)
Q Consensus 27 s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~ 63 (84)
++.-++.+++.++...++++.++|+- -.++-|+|..
T Consensus 25 cl~~~l~k~~~G~~~G~~~s~l~frr-R~~pv~lG~G 60 (75)
T PF04418_consen 25 CLSDTLVKTGLGFGIGVVFSLLFFRR-RAWPVALGAG 60 (75)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHcc-chHHHHhhcc
Confidence 45567788999999999999999998 4455566653
No 86
>PF14007 YtpI: YtpI-like protein
Probab=56.01 E-value=44 Score=21.40 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=31.2
Q ss_pred eeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 034777 30 ATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLIL 72 (84)
Q Consensus 30 ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll 72 (84)
++=.|.++|..+..+.-.-.+-..-+....+|+++++.|+.-+
T Consensus 32 ~aka~ialG~fl~~fgiNQ~~~~~st~~~iV~~ifl~lG~~n~ 74 (89)
T PF14007_consen 32 SAKANIALGIFLILFGINQMFLFGSTVRLIVGAIFLVLGLFNL 74 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHH
Confidence 3344666666666665555555788899999999999999843
No 87
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=51.65 E-value=68 Score=22.37 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Q 034777 8 ILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVV 67 (84)
Q Consensus 8 ~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~ 67 (84)
+.......+-|.-+-|..+...+.+.+... ++...++...+ +.+...+..+.++..
T Consensus 57 ~~~~f~~lR~~aGG~Ha~t~~~C~i~S~~~-~~~~~~l~~~~---~~~~~~~~ii~i~s~ 112 (184)
T smart00793 57 VHLSFLFLRRFAGGAHAKSSLLCTLLSIII-FVGIPFLIKFL---DLNLPFILGLFLIGL 112 (184)
T ss_pred HHHHHHHHHhhCCceecCCcHHHHHHHHHH-HHHHHHHHHHc---ChhHHHHHHHHHHHH
Confidence 333344444455555556668888887765 45444444332 255555665544433
No 88
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=51.50 E-value=21 Score=28.21 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHHhcc-cCceeeeehhhhHHHHHHHHHHHHH-------hcccccHHHHHHHHHHHHHHHHHccCCCccccC
Q 034777 16 GCYINSLRV-LSSLQATVTNFATNFLSSGLAGFFL-------FEEQLSFQWFAGALFIVVGVLILSKSSIEMKDS 82 (84)
Q Consensus 16 ~~y~kaL~~-~~s~~ati~~~s~n~v~t~l~g~~~-------f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~~~ 82 (84)
..|-+++|. +-|+. +-++.++.-++.++.--.+ ++++-...-++|+++.++|+.+.++..+.|+|+
T Consensus 88 ltfGl~mryLGvSLG-~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~ 161 (344)
T PF06379_consen 88 LTFGLAMRYLGVSLG-QSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE 161 (344)
T ss_pred hhHhHHHHHHhHHHH-HHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence 567788887 33322 2223333344444444333 233334567899999999999998886555543
No 89
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=50.92 E-value=33 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=20.4
Q ss_pred Hhccc-----ccHHHHHHHHHHHHHHHHHccC
Q 034777 49 LFEEQ-----LSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 49 ~f~E~-----l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
+||++ -++..++|++++++|..+...-
T Consensus 104 lFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 104 LFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred eccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 66553 4567899999999999976543
No 90
>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function.
Probab=49.90 E-value=25 Score=25.29 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcccccH-----HHHHHHHHHHHHHHHH
Q 034777 37 TNFLSSGLAGFFLFEEQLSF-----QWFAGALFIVVGVLIL 72 (84)
Q Consensus 37 ~n~v~t~l~g~~~f~E~l~~-----~~~~G~~lIi~Gv~ll 72 (84)
.|..--+.++.+++-||+.+ .+..|.+++..|+.++
T Consensus 151 mnl~wMa~lt~~~~~EK~~p~g~~l~r~~G~~l~~~g~~ll 191 (191)
T PF09948_consen 151 MNLAWMAALTALMFAEKLLPWGRRLSRAVGVALIVWGVLLL 191 (191)
T ss_pred ccHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHC
Confidence 34566778888999999765 5789999999998764
No 91
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=48.61 E-value=37 Score=18.82 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 40 LSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 40 v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
+.+.+.|.+++=-+-=..+.+|+-+|+.|+.=
T Consensus 2 i~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 2 ILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777889999999999873
No 92
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=48.26 E-value=56 Score=26.52 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCcc
Q 034777 8 ILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEM 79 (84)
Q Consensus 8 ~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~ 79 (84)
..-|.++=.+..+|+=..+++++|+- +++.+=++.++=.++=+.+.|+...+|.+.|..|-+.++..+++.
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~Tlg-mSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLG-MSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheee-eeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 34455566666677766666666543 233345556666555577999999999999999999998875553
No 93
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=46.69 E-value=22 Score=21.60 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034777 56 FQWFAGALFIVVGVLIL 72 (84)
Q Consensus 56 ~~~~~G~~lIi~Gv~ll 72 (84)
=+||+ ++++++|+++=
T Consensus 6 dYWWi-iLl~lvG~i~n 21 (63)
T PF13980_consen 6 DYWWI-ILLILVGMIIN 21 (63)
T ss_pred HHHHH-HHHHHHHHHHH
Confidence 36888 99999999863
No 94
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=46.18 E-value=34 Score=24.23 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=29.0
Q ss_pred HHHHHHHhcccccHHHHHHHHHHH--HHHHHHccCCCc
Q 034777 43 GLAGFFLFEEQLSFQWFAGALFIV--VGVLILSKSSIE 78 (84)
Q Consensus 43 ~l~g~~~f~E~l~~~~~~G~~lIi--~Gv~ll~~~~~~ 78 (84)
-.+|..+|.|..-+-...|+.|.+ .|.+.++++.++
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~~~~ 169 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTHDLII 169 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 567999999999999999998875 578888876443
No 95
>COG2119 Predicted membrane protein [Function unknown]
Probab=45.83 E-value=62 Score=23.61 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=40.8
Q ss_pred HhcccC--ceeeeehhhhHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHccCCCccc
Q 034777 21 SLRVLS--SLQATVTNFATNFLSSGLAGFFLFEE--QLSFQWFAGALFIVVGVLILSKSSIEMK 80 (84)
Q Consensus 21 aL~~~~--s~~ati~~~s~n~v~t~l~g~~~f~E--~l~~~~~~G~~lIi~Gv~ll~~~~~~~~ 80 (84)
|+|..+ -.......+..|-.+++++|.+.-.= +-...|..|..+++.|+.++-.++++++
T Consensus 28 A~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~ 91 (190)
T COG2119 28 AMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDE 91 (190)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 456553 34555567777888888888776433 2245677888899999998876654443
No 96
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=45.66 E-value=36 Score=25.75 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHHHHc
Q 034777 34 NFATNFLSSGLAGFFLFEEQL----SFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 34 ~~s~n~v~t~l~g~~~f~E~l----~~~~~~G~~lIi~Gv~ll~ 73 (84)
+...+++-++++|.++ ++.+ ..+..+|..+|+.|+++.-
T Consensus 90 ~iivatiP~~i~Gl~l-~~~i~~~~~~~~~i~~~Lii~GilL~~ 132 (276)
T PRK12554 90 YIIIGTIPAGVLGLLF-KDRIETVLRDLRIVAIALIVTGVLLWL 132 (276)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3456667777788554 3332 3356899999999999743
No 97
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=44.72 E-value=56 Score=21.33 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 40 LSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 40 v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
++.+++|.+ ++|+.....+.=+.++++|+++
T Consensus 57 l~G~~lG~W-LD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 57 LLGVAVGIW-LDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHH-HHhhcCCCcHHHHHHHHHHHHH
Confidence 334444543 4777765445556688888874
No 98
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=44.67 E-value=35 Score=25.48 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=30.4
Q ss_pred ehhhhHHHHHHHHHHHHHhc--cc-c-cHHHHHHHHHHHHHHHHHccC
Q 034777 32 VTNFATNFLSSGLAGFFLFE--EQ-L-SFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 32 i~~~s~n~v~t~l~g~~~f~--E~-l-~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
......+.+-++++|..+-+ |+ . +-++.+|..+++.|++++-.+
T Consensus 82 ~~~iiiatip~~v~G~~~~~~i~~~~~~~~~~v~~~Li~~g~lL~~~~ 129 (259)
T PF02673_consen 82 LLLIIIATIPTGVVGLLFKDFIEALFFSSPLVVAIALIITGLLLWLAD 129 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Confidence 33456667777888866533 33 3 367889999999999986443
No 99
>COG4267 Predicted membrane protein [Function unknown]
Probab=44.45 E-value=1e+02 Score=25.35 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHH
Q 034777 5 GLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSF---QWFAGALFIVVGVL 70 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~---~~~~G~~lIi~Gv~ 70 (84)
.-.+.||.+--.-|..+||+. ...+.++..|++.+.++|+++.+-+... .--+|+..++.+..
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y---~~iv~sF~iG~~~sv~La~~~~~~~ie~lLL~~~IGi~~i~~l~~ 205 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKY---KLIVLSFFIGYVVSVLLARLFLKSPIEGLLLTLDIGIFIILFLLN 205 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 345677877777899999887 5667889999999999999988764333 23467777777765
No 100
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=42.19 E-value=28 Score=20.60 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=13.5
Q ss_pred HHHHHHHHHccCCCccccC
Q 034777 64 FIVVGVLILSKSSIEMKDS 82 (84)
Q Consensus 64 lIi~Gv~ll~~~~~~~~~~ 82 (84)
..++|+.++...+++.++|
T Consensus 36 ylilGi~L~yis~~~~~~~ 54 (54)
T PF04835_consen 36 YLILGIALIYISSNDDKKN 54 (54)
T ss_pred HHHHHHHHhhhccCccccC
Confidence 4577888888777766654
No 101
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=41.95 E-value=8.8 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=23.4
Q ss_pred HHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 48 FLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 48 ~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
+-|++..+....+|.++...|++++.-+
T Consensus 71 ys~n~~~si~~~~G~vlLs~GLmlL~~~ 98 (129)
T PF15099_consen 71 YSFNSHGSIISIFGPVLLSLGLMLLACS 98 (129)
T ss_pred EeecCCcchhhhehHHHHHHHHHHHHhh
Confidence 3468899999999999999999986543
No 102
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=41.36 E-value=55 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHhc---ccc-cHHHHHHHHHHHHHHHHHc
Q 034777 34 NFATNFLSSGLAGFFLFE---EQL-SFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 34 ~~s~n~v~t~l~g~~~f~---E~l-~~~~~~G~~lIi~Gv~ll~ 73 (84)
....+.+-++++|.++-+ |.+ +.++.+|..+|+.|+++.-
T Consensus 83 ~iii~tiP~~i~Gl~~~~~i~~~l~~~~~~v~~~Lii~gilL~~ 126 (255)
T TIGR00753 83 LILLGLIPTVVLGLLFKDLIKSLLFNFLLTVVIALIVGAGLLIL 126 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 445667777888865533 213 3357899999999999753
No 103
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=40.43 E-value=54 Score=24.66 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHc
Q 034777 34 NFATNFLSSGLAGFFLFEEQ----LSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 34 ~~s~n~v~t~l~g~~~f~E~----l~~~~~~G~~lIi~Gv~ll~ 73 (84)
....+.+-++++|.++ ++. +.....+|..+|+.|+++.-
T Consensus 89 ~iii~tiP~~i~Gl~~-~~~i~~~l~~~~~v~~~Lii~gilL~~ 131 (268)
T PRK00281 89 LVIVATIPAGVLGLLF-KDFIKEHLFSPIVVAIALIVGGILLLW 131 (268)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4466677788888654 332 32346899999999999743
No 104
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=39.66 E-value=21 Score=24.89 Aligned_cols=43 Identities=28% Similarity=0.583 Sum_probs=32.4
Q ss_pred eeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 28 LQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 28 ~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
+-.||-++-++++-..-.| .+|.|+--..|.+|+..++.|..+
T Consensus 23 lfiticsfflgiiaigyyg-yifteraiafwvcgisvvvfgtll 65 (175)
T PF13295_consen 23 LFITICSFFLGIIAIGYYG-YIFTERAIAFWVCGISVVVFGTLL 65 (175)
T ss_pred eHHHHHHHHHHHHHHhhhh-eeehhHHHHHHhhchhhhhHhHHH
Confidence 4455666666666555555 478999999999999999999875
No 105
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=38.92 E-value=43 Score=21.95 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=22.1
Q ss_pred HHHHHHHhcccccHHHHH-----HHHHHHHHHHHH
Q 034777 43 GLAGFFLFEEQLSFQWFA-----GALFIVVGVLIL 72 (84)
Q Consensus 43 ~l~g~~~f~E~l~~~~~~-----G~~lIi~Gv~ll 72 (84)
...+++-+++.++.++++ ++.+|++|+.+|
T Consensus 22 Lv~a~Lsin~~l~LP~~l~~~~aai~MIf~Gi~lM 56 (96)
T PF07214_consen 22 LVLAYLSINDYLSLPAPLSTPTAAIAMIFVGIGLM 56 (96)
T ss_pred HHHHHHHHcccccCcccccCchHHHHHHHHHHHHH
Confidence 345667788988887654 578888888765
No 106
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=38.86 E-value=97 Score=19.87 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHHHHHcc
Q 034777 55 SFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 55 ~~~~~~G~~lIi~Gv~ll~~ 74 (84)
..++.++..+++.|+.++-+
T Consensus 36 ~fP~~l~~~l~~~~~~l~~~ 55 (141)
T PF07331_consen 36 FFPRLLGILLLILSLLLLVR 55 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665433
No 107
>COG1971 Predicted membrane protein [Function unknown]
Probab=38.40 E-value=61 Score=23.56 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHccC
Q 034777 36 ATNFLSSGLAGFFLFEE-----QLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 36 s~n~v~t~l~g~~~f~E-----~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
+.--..+-++||+.=+. +...+|..++.+++.|+-++-..
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~ 88 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEG 88 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566677655222 33467888899999999987655
No 108
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=38.13 E-value=27 Score=27.66 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCc
Q 034777 36 ATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIE 78 (84)
Q Consensus 36 s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~ 78 (84)
|...++..++|..+==|+.++.-.+=+.+|-.|++++..++.+
T Consensus 118 SSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq 160 (349)
T KOG1443|consen 118 SSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ 160 (349)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence 3348999999987777999999999999999999998876543
No 109
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=38.06 E-value=43 Score=22.46 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=25.8
Q ss_pred eeeeehhhhHHHHHHHHHHHHHhc-----ccccHHHHHHHHHHHH
Q 034777 28 LQATVTNFATNFLSSGLAGFFLFE-----EQLSFQWFAGALFIVV 67 (84)
Q Consensus 28 ~~ati~~~s~n~v~t~l~g~~~f~-----E~l~~~~~~G~~lIi~ 67 (84)
...++.|+.+..+.+.++||++-+ .+...+-.+|++.=++
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~ 122 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALL 122 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 456777888877777888874443 4566666666554333
No 110
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=36.52 E-value=89 Score=18.18 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHHHHHHHHHc
Q 034777 54 LSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 54 l~~~~~~G~~lIi~Gv~ll~ 73 (84)
-.....+|.+++..|+..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~ 61 (73)
T PF02656_consen 42 RRVSKVLGLLLIVLGLLTLI 61 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999988754
No 111
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=35.20 E-value=13 Score=22.24 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHccC
Q 034777 58 WFAGALFIVVGVLILSKS 75 (84)
Q Consensus 58 ~~~G~~lIi~Gv~ll~~~ 75 (84)
+.+|++|++.|++++-..
T Consensus 1 kiigi~Llv~GivLl~~G 18 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFG 18 (59)
T ss_pred CeeeehHHHHHHHHHHhh
Confidence 357899999999987433
No 112
>PRK10591 hypothetical protein; Provisional
Probab=34.20 E-value=61 Score=21.10 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=21.8
Q ss_pred HHHHHHHhcccccHHHHHH-----HHHHHHHHHHH
Q 034777 43 GLAGFFLFEEQLSFQWFAG-----ALFIVVGVLIL 72 (84)
Q Consensus 43 ~l~g~~~f~E~l~~~~~~G-----~~lIi~Gv~ll 72 (84)
...+++-.+|.++.++++| +.+|++|+.+|
T Consensus 22 Lv~a~Lsindyl~lP~~l~~~~aai~mif~Gi~lm 56 (92)
T PRK10591 22 LVVAYLSLNDYLSLPEPLSTPTAAILMIFLGVLLM 56 (92)
T ss_pred HHHHHHHHcccccCCccccCchHHHHHHHHHHHHh
Confidence 4456778899888887765 67777887665
No 113
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=34.19 E-value=66 Score=15.96 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=11.3
Q ss_pred cccHHHHHHHHHHHHHHHHHc
Q 034777 53 QLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 53 ~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
.-+..-++|++++..+.++..
T Consensus 9 ~~~~~~~~G~~l~~~~~~~~~ 29 (34)
T TIGR01167 9 GNSLLLLLGLLLLGLGGLLLR 29 (34)
T ss_pred ccHHHHHHHHHHHHHHHHHhe
Confidence 345556677755555444433
No 114
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.86 E-value=16 Score=28.70 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 36 ATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 36 s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
|+-.+++.++.+++++|+-+..-..+-.+|+.|--+
T Consensus 136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred chhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 445688999999999999999999999999888654
No 115
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=33.80 E-value=37 Score=26.17 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 36 ATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 36 s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
++|=...++.|..+|+|+.+.+....+.+=...-++
T Consensus 258 ALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 258 ALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred HhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 456666789999999999999999887764443333
No 116
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=33.53 E-value=68 Score=22.84 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=27.7
Q ss_pred HHHHHHHhcccccHHHHHHHHHHH--HHHHHHccCCC
Q 034777 43 GLAGFFLFEEQLSFQWFAGALFIV--VGVLILSKSSI 77 (84)
Q Consensus 43 ~l~g~~~f~E~l~~~~~~G~~lIi--~Gv~ll~~~~~ 77 (84)
.-+|..+|.|..=+....|+.|.+ .|.+.++++.+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~~ 169 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRER 169 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 556888999988888899988874 68888887643
No 117
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=81 Score=25.74 Aligned_cols=15 Identities=27% Similarity=0.778 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHc
Q 034777 59 FAGALFIVVGVLILS 73 (84)
Q Consensus 59 ~~G~~lIi~Gv~ll~ 73 (84)
..|+.+++.|.+++.
T Consensus 309 l~Gii~~iiG~~~L~ 323 (436)
T COG1030 309 LLGIILFIIGLLLLF 323 (436)
T ss_pred HHHHHHHHHhhhhcc
Confidence 334444444444443
No 118
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=32.91 E-value=85 Score=24.75 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
+.-..|.++=.+=++|||.-+=. +.+..=+.-.+-+.+.|.++.+.+.+++..+=..+|-.|+.+-...
T Consensus 88 ~is~tn~~s~~~~yeaLKyvSyP-tq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~ 156 (327)
T KOG1581|consen 88 LISFTNTLSSWCGYEALKYVSYP-TQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLF 156 (327)
T ss_pred HHHHHhhcchHHHHHHHHhccch-HHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEe
Confidence 34456666666777888874322 2233334457788999999999999999999999999999875444
No 119
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=32.83 E-value=58 Score=19.02 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 034777 3 RYGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLIL 72 (84)
Q Consensus 3 ~~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll 72 (84)
.++++.+.-++++..+=+.+|..- .-+-+.+-+..++.|...++.|++++
T Consensus 4 algLvliiEGl~~~l~P~~~r~~l--------------------~~l~~~p~~~lR~~Gl~~~~~Gl~ll 53 (57)
T PF09838_consen 4 ALGLVLIIEGLLPFLAPERWRRML--------------------RQLAQLPDRQLRRIGLVSMVIGLVLL 53 (57)
T ss_pred HHHHHHHHHhhHHHhCHHHHHHHH--------------------HHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666665420 01225566778899999999999875
No 120
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=32.54 E-value=93 Score=20.56 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=21.6
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 034777 43 GLAGFFLFEEQLSFQWFAGALFIVVGVLIL 72 (84)
Q Consensus 43 ~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll 72 (84)
.+.|.+.+++ -...+..|..+++.|++-+
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence 4466677777 5567788999999998854
No 121
>COG2034 Predicted membrane protein [Function unknown]
Probab=31.98 E-value=69 Score=20.56 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHccCCCc
Q 034777 57 QWFAGALFIVVGVLILSKSSIE 78 (84)
Q Consensus 57 ~~~~G~~lIi~Gv~ll~~~~~~ 78 (84)
.-.+|..++..|+.+...++.+
T Consensus 14 li~iGf~LifLGi~l~~~~~~~ 35 (85)
T COG2034 14 LIFIGFLLIFLGIVLPAFSPFA 35 (85)
T ss_pred HHHHHHHHHHHHHHHHhcCCcc
Confidence 3468999999999998877443
No 122
>PRK14774 lipoprotein signal peptidase; Provisional
Probab=31.72 E-value=1.5e+02 Score=21.21 Aligned_cols=26 Identities=8% Similarity=0.017 Sum_probs=16.8
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHH
Q 034777 45 AGFFLFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 45 ~g~~~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
+.++..+++-+...-+|..+|+.|.+
T Consensus 78 i~~~~~~~~~~~~~~ial~LIlgGAl 103 (185)
T PRK14774 78 VWRWVWRSTPTRLARISGGLLIGGAL 103 (185)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHH
Confidence 33444455555555688999988876
No 123
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=31.62 E-value=81 Score=25.85 Aligned_cols=35 Identities=14% Similarity=-0.054 Sum_probs=26.8
Q ss_pred HHhcccC---ceeeeehhhhHHHHHHHHHHHHHhcccc
Q 034777 20 NSLRVLS---SLQATVTNFATNFLSSGLAGFFLFEEQL 54 (84)
Q Consensus 20 kaL~~~~---s~~ati~~~s~n~v~t~l~g~~~f~E~l 54 (84)
++++-.+ .+..+.-|+++++...++++++++.|.=
T Consensus 224 ~a~aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e~k 261 (453)
T PLN03098 224 RAIQGGDGAPDVLETAGNAAINIGGIVAFVSLFLWENK 261 (453)
T ss_pred HHhcCCCCCccHhHhhcccchHHHHHHHHHHHHHHHhc
Confidence 5555432 3556778999999999999999998853
No 124
>PF14329 DUF4386: Domain of unknown function (DUF4386)
Probab=31.54 E-value=1e+02 Score=21.52 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777 41 SSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 41 ~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
-..++|+.+++.++ .++|+|...++.|...+.
T Consensus 145 ~~lllg~l~~rs~~-~Pr~l~~lg~v~g~~~l~ 176 (215)
T PF14329_consen 145 WLLLLGYLLLRSRL-LPRWLGALGLVAGIGYLA 176 (215)
T ss_pred HHHHHHHHHHHcCc-hhHHHHHHHHHHHHHHHH
Confidence 34678888998885 567888888888877554
No 125
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=31.15 E-value=90 Score=24.80 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 034777 40 LSSGLAGFFLFEEQLSFQWFAGALFIVVGVLIL 72 (84)
Q Consensus 40 v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll 72 (84)
+.+.++|..+.+|+++...|+|......|+..=
T Consensus 281 l~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 281 VCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999886
No 126
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=30.92 E-value=2e+02 Score=20.56 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHH
Q 034777 6 LVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAG 46 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g 46 (84)
+.+.......+-|.-+.|..++..+++.+... +++...+.
T Consensus 67 li~~l~f~~lR~~aGG~Ha~s~~~C~I~S~ii-fv~~~~l~ 106 (210)
T PRK01100 67 VTVHLSFLWLRRYSFGLHATNSINCTLISLTM-FVLGAFIF 106 (210)
T ss_pred HHHHHHHHHHHhccCceecCCCcHHHHHHHHH-HHHHHHHH
Confidence 33444455556666666677788998877765 44444333
No 127
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=30.84 E-value=60 Score=25.23 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccC
Q 034777 37 TNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 37 ~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
.-.+=+.++|.++-+.+-+|++.+=+.+|+.||.+--.+
T Consensus 120 cKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 120 CKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred CCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 334455688999999999999999999999999986544
No 128
>PRK14782 lipoprotein signal peptidase; Provisional
Probab=30.82 E-value=1.5e+02 Score=20.33 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=16.8
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHHH
Q 034777 44 LAGFFLFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 44 l~g~~~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
.+.++..+++-+.....|..+|+.|.+
T Consensus 77 ~i~~~~~~~~~~~~~~~~l~lI~gGal 103 (157)
T PRK14782 77 GVVIWVRRSGGSRWMLISAGLLIGGAL 103 (157)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 333445555545544578888888876
No 129
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=30.17 E-value=1.1e+02 Score=17.08 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 034777 35 FATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 35 ~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
+..+.+....+|+++ +|+.....|.=+..++.|++
T Consensus 10 ~~~~i~~g~~~G~~l-D~~~~t~p~~~~~g~llG~~ 44 (55)
T PF09527_consen 10 MAAPILVGFFLGYWL-DKWFGTSPWFTLIGLLLGIA 44 (55)
T ss_pred HHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHH
Confidence 344556666777555 77777655555555666654
No 130
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=28.45 E-value=4.6 Score=31.21 Aligned_cols=36 Identities=28% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcc
Q 034777 39 FLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSK 74 (84)
Q Consensus 39 ~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~ 74 (84)
...+.++++++++|+.+..-++-+..|+.|+.+-+.
T Consensus 120 P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 120 PPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred chhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 678899999999999998777666666666655443
No 131
>PF14927 Neurensin: Neurensin
Probab=28.42 E-value=58 Score=22.55 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.2
Q ss_pred HHhcccccHHHHHHHHHHHHHHHHHc
Q 034777 48 FLFEEQLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 48 ~~f~E~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
.-|+..++.-+..|+.+.++|-++++
T Consensus 89 ~~~n~~Ld~c~laG~~L~~lGg~lla 114 (140)
T PF14927_consen 89 ARFNNALDTCKLAGLILLCLGGILLA 114 (140)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999988765
No 132
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=28.15 E-value=77 Score=21.67 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHH
Q 034777 34 NFATNFLSSGLAGFFLFEEQ----LSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 34 ~~s~n~v~t~l~g~~~f~E~----l~~~~~~G~~lIi~Gv~l 71 (84)
|.-++....++.++..++++ .+...-.|..+-+..+++
T Consensus 87 nill~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lp~vaii~ 128 (149)
T PF14126_consen 87 NILLNVGLYGLFAYFSLNLSGELGATFSFGIGFFLPLVAIIF 128 (149)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 34444444444455544443 455555666666666553
No 133
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.01 E-value=12 Score=29.30 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhccc--CceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Q 034777 6 LVILFNVAMWGCYINSLRVL--SSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 6 l~~~~n~~mw~~y~kaL~~~--~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
+..++|-.| =|..+.|.. +.++=-|- -..--...++++..+++|..+..||-|..+++.|-..-.
T Consensus 260 LsglfgF~m--gyvTg~QIK~TSplThnIS-gTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 260 LSGLFGFAM--GYVTGWQIKVTSPLTHNIS-GTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT 326 (347)
T ss_pred HHHHHHHHh--hheeeEEEEecccceeeec-HhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence 445555443 245555542 22222222 222235678889999999999999999999999988644
No 134
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.11 E-value=22 Score=23.00 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcccCc---eeeeehhhhHHHHHHHHHHH
Q 034777 11 NVAMWGCYINSLRVLSS---LQATVTNFATNFLSSGLAGF 47 (84)
Q Consensus 11 n~~mw~~y~kaL~~~~s---~~ati~~~s~n~v~t~l~g~ 47 (84)
|.-||+||+ ++.+- -...|.-+|++|+.+.+.=.
T Consensus 42 t~~mlkfYT---Dda~GlKV~PvvVLvmSvgFIasV~~LH 78 (88)
T KOG3457|consen 42 TGGMLKFYT---DDAPGLKVDPVVVLVMSVGFIASVFALH 78 (88)
T ss_pred CCceeEEee---cCCCCceeCCeeehhhhHHHHHHHHHHH
Confidence 455888998 33221 23456677888888776543
No 135
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=26.92 E-value=33 Score=21.44 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=19.1
Q ss_pred HHhcccccHHHHHHHHHHHHHHHHHc
Q 034777 48 FLFEEQLSFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 48 ~~f~E~l~~~~~~G~~lIi~Gv~ll~ 73 (84)
-++...+|+-++.|+..++.+.++-.
T Consensus 46 ~v~~G~~t~g~~~g~~~~~~~~~l~~ 71 (91)
T PF04341_consen 46 PVFPGSLTLGIVLGLGQIVFAWVLTW 71 (91)
T ss_pred cccCCCcCHHHHHHHHHHHHHHHHHH
Confidence 35522788889999999988877643
No 136
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=26.84 E-value=1.1e+02 Score=21.77 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=17.5
Q ss_pred hcccccH---HHHHHHHHHHHHHHHHc
Q 034777 50 FEEQLSF---QWFAGALFIVVGVLILS 73 (84)
Q Consensus 50 f~E~l~~---~~~~G~~lIi~Gv~ll~ 73 (84)
+++.++. +|+.|..|+..|..++-
T Consensus 54 ~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 54 LAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 4555533 58888899999999774
No 137
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=26.07 E-value=1.1e+02 Score=15.84 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHHHHHHc
Q 034777 55 SFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 55 ~~~~~~G~~lIi~Gv~ll~ 73 (84)
++.++.++.++..|++++-
T Consensus 8 a~i~ly~~l~~~s~~~Li~ 26 (29)
T TIGR03063 8 AQIGLYAVLFLGSGLFLIR 26 (29)
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 3457778888888888874
No 138
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=25.19 E-value=2.4e+02 Score=23.93 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 034777 33 TNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 33 ~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
.....|.+++..+=.+++|-.+|.+-+.|+++.+ |..
T Consensus 470 iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtI-Gma 506 (604)
T PRK12933 470 VALIANMVCLFGLLALIPGAVLTLPGIAGLVLTV-GMA 506 (604)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH-Hhh
Confidence 3444444444333333348999999999988776 554
No 139
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=24.48 E-value=96 Score=21.21 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777 35 FATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI 77 (84)
Q Consensus 35 ~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~ 77 (84)
++.++.+-..-.+.+|+. +.-..|-.+.+.|+.+++.+++
T Consensus 14 t~~Gflffl~Gif~ffDr---aLl~lGNlL~iiG~fliags~k 53 (129)
T COG5120 14 TSIGFLFFLVGIFLFFDR---ALLILGNLLMIIGIFLIAGSRK 53 (129)
T ss_pred eehhHHHHHHHHHHHhhh---HHHHhcCHHHHHHHHHHhcccc
Confidence 344555544444455554 3567899999999999987753
No 140
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=24.30 E-value=1.5e+02 Score=16.95 Aligned_cols=13 Identities=31% Similarity=1.012 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 034777 56 FQWFAGALFIVVG 68 (84)
Q Consensus 56 ~~~~~G~~lIi~G 68 (84)
..|..|+.|+..|
T Consensus 55 ~~~igg~iLi~iG 67 (67)
T PF02659_consen 55 AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHC
Confidence 5566667776655
No 141
>PRK09577 multidrug efflux protein; Reviewed
Probab=24.24 E-value=1.4e+02 Score=26.39 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 034777 41 SSGLAGFFLFEEQLSFQWFAGALFIVVGVLI 71 (84)
Q Consensus 41 ~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~l 71 (84)
..++.|.+++|.+++....+|++ +++|++.
T Consensus 904 ~G~~~~l~l~g~~l~~~s~~G~i-~L~GivV 933 (1032)
T PRK09577 904 IGAVLGVTLRGMPNDIYFKVGLI-ATIGLSA 933 (1032)
T ss_pred HHHHHHHHHhCCCccHHHHHHHH-HHHHHHH
Confidence 35678899999999999999998 6777763
No 142
>PRK13664 hypothetical protein; Provisional
Probab=24.15 E-value=94 Score=18.76 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 034777 56 FQWFAGALFIVVGVLI 71 (84)
Q Consensus 56 ~~~~~G~~lIi~Gv~l 71 (84)
=.||+=++++++|+++
T Consensus 6 dyWWilill~lvG~i~ 21 (62)
T PRK13664 6 KYWWILVLVFLVGVLL 21 (62)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689989999999986
No 143
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.00 E-value=65 Score=23.93 Aligned_cols=19 Identities=16% Similarity=0.506 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 034777 54 LSFQWFAGALFIVVGVLIL 72 (84)
Q Consensus 54 l~~~~~~G~~lIi~Gv~ll 72 (84)
+|..+|+.+.+++.|+.++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~ 253 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILI 253 (269)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 6888999999999999876
No 144
>PRK14791 lipoprotein signal peptidase; Provisional
Probab=23.74 E-value=2.4e+02 Score=19.07 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=18.1
Q ss_pred HHHHHHHhc-ccccHHHHHHHHHHHHHHH
Q 034777 43 GLAGFFLFE-EQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 43 ~l~g~~~f~-E~l~~~~~~G~~lIi~Gv~ 70 (84)
....+++++ ++-+..+..|..+|+.|.+
T Consensus 68 ~~i~~~~~~~~~~~~~~~~~l~lilgGal 96 (146)
T PRK14791 68 LGLIYYIIKYKPTSKLYKISLSLIISGAI 96 (146)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhHh
Confidence 334444544 3556666688899888876
No 145
>PRK00376 lspA lipoprotein signal peptidase; Reviewed
Probab=23.42 E-value=2.5e+02 Score=19.24 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHHHH
Q 034777 41 SSGLAGFFLFEE-QLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 41 ~t~l~g~~~f~E-~l~~~~~~G~~lIi~Gv~ 70 (84)
....+.+++.+. +.+...-+|..+|+.|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~li~gGai 108 (160)
T PRK00376 78 ISVVLVYLLYRSKALQKLNNIAYALILGGAL 108 (160)
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 334444444443 445555688889988876
No 146
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.14 E-value=98 Score=24.90 Aligned_cols=33 Identities=12% Similarity=0.437 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhccccc---------HHHHHHHHHHHHHH
Q 034777 37 TNFLSSGLAGFFLFEEQLS---------FQWFAGALFIVVGV 69 (84)
Q Consensus 37 ~n~v~t~l~g~~~f~E~l~---------~~~~~G~~lIi~Gv 69 (84)
.-|..+++.|++.||++.+ |+|....+-|..=+
T Consensus 273 ~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~ 314 (437)
T KOG1303|consen 273 FLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVL 314 (437)
T ss_pred HHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHH
Confidence 3488889999999999998 88888887555443
No 147
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=23.13 E-value=31 Score=22.00 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.0
Q ss_pred HHHHHhcc-cCceeeeehhhh
Q 034777 17 CYINSLRV-LSSLQATVTNFA 36 (84)
Q Consensus 17 ~y~kaL~~-~~s~~ati~~~s 36 (84)
-|+..|+. .|+.++||.+++
T Consensus 84 ~fi~~Le~~ypstvsTV~RT~ 104 (107)
T PF10288_consen 84 DFIDNLEENYPSTVSTVVRTA 104 (107)
T ss_pred HHHHHHhCcCcchHhHHHHHh
Confidence 47788887 588999998875
No 148
>PRK14796 lipoprotein signal peptidase; Provisional
Probab=22.92 E-value=2.5e+02 Score=19.33 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=15.3
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHH
Q 034777 45 AGFFLFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 45 ~g~~~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
+.+++.+++ +....+|..+|+.|.+
T Consensus 81 ~~~~~~~~~-~~~~~~~l~li~gGal 105 (161)
T PRK14796 81 LAIWMARST-TRLAAIALGLIIGGAI 105 (161)
T ss_pred HHHHHHHcc-cHHHHHHHHHHHHHHH
Confidence 334444443 4555578888888865
No 149
>PRK14770 lipoprotein signal peptidase; Provisional
Probab=22.66 E-value=2.6e+02 Score=19.43 Aligned_cols=27 Identities=22% Similarity=0.087 Sum_probs=15.9
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHH
Q 034777 43 GLAGFFLFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 43 ~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
..+.+++++++ +...-+|..+|+.|.+
T Consensus 84 ~~l~~~~~~~~-~~~~~~~l~lIlgGAl 110 (167)
T PRK14770 84 LLLGVWLTRTP-RPLVAAALGAIMGGAI 110 (167)
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence 33444455554 3444478888888765
No 150
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.52 E-value=2.3e+02 Score=19.25 Aligned_cols=33 Identities=30% Similarity=0.643 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcccccH--HHHHHHHHHHHHHHHH
Q 034777 40 LSSGLAGFFLFEEQLSF--QWFAGALFIVVGVLIL 72 (84)
Q Consensus 40 v~t~l~g~~~f~E~l~~--~~~~G~~lIi~Gv~ll 72 (84)
+.+.+.+..+|.-.+++ .-.+|++++.+|++++
T Consensus 19 i~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~ 53 (191)
T PF04156_consen 19 IASGIAALVLFISGLGALISFILGIALLALGVVLL 53 (191)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433322 3344444454455544
No 151
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=22.37 E-value=1.4e+02 Score=22.82 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=30.8
Q ss_pred ehhhhHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHccC
Q 034777 32 VTNFATNFLSSGLAGFFLFE---EQLSFQWFAGALFIVVGVLILSKS 75 (84)
Q Consensus 32 i~~~s~n~v~t~l~g~~~f~---E~l~~~~~~G~~lIi~Gv~ll~~~ 75 (84)
..+..+.++-++++|.++-+ |.+--.+.+...+|+.|++++-..
T Consensus 87 ~l~ilvatiPa~v~Gl~~~d~i~~~l~~~~~va~~lIv~gi~li~~e 133 (270)
T COG1968 87 WLKILVATIPAVVLGLLFKDFIKSHLFNPRVVAIALIVGGILLILAE 133 (270)
T ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 44556666667788866654 345558899999999999975433
No 152
>PRK14787 lipoprotein signal peptidase; Provisional
Probab=22.25 E-value=2.3e+02 Score=19.47 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=14.3
Q ss_pred cccccHHHHHHHHHHHHHHH
Q 034777 51 EEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 51 ~E~l~~~~~~G~~lIi~Gv~ 70 (84)
..+.+..+-+|..+|+.|.+
T Consensus 80 ~~~~~~~~~~~l~li~gGal 99 (159)
T PRK14787 80 SKNRTPLFLLAFGLILGGGI 99 (159)
T ss_pred ccccchHHHHHHHHHHHHHH
Confidence 34445566689999999876
No 153
>PRK14777 lipoprotein signal peptidase; Provisional
Probab=21.57 E-value=2.8e+02 Score=19.65 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=15.1
Q ss_pred HhcccccHHHHHHHHHHHHHHH
Q 034777 49 LFEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 49 ~f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
++..+-+..+-+|..+|+.|.+
T Consensus 102 ~~~~~~~~~~~~al~LIlgGAi 123 (184)
T PRK14777 102 LLRRPQPRFLTVVLSLIAAGAI 123 (184)
T ss_pred HHHhccchHHHHHHHHHHHHHH
Confidence 3344445666688999999876
No 154
>MTH00021 ND6 NADH dehydrogenase subunit 6; Validated
Probab=21.34 E-value=1.6e+02 Score=20.75 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=27.7
Q ss_pred HHHHHHHhcccccHHHHHHHHHHH--HHHHHHccCC
Q 034777 43 GLAGFFLFEEQLSFQWFAGALFIV--VGVLILSKSS 76 (84)
Q Consensus 43 ~l~g~~~f~E~l~~~~~~G~~lIi--~Gv~ll~~~~ 76 (84)
.-+|..+|.|..-|-...|+.|.+ .|.+.++++.
T Consensus 131 ~~iG~~L~t~y~l~Fel~s~lLLvAmIGAIvLa~~~ 166 (188)
T MTH00021 131 EALGRILYITCYYLFLLASFILLVAMIGAIVLTQEP 166 (188)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567889999988888889988875 5888888864
No 155
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=21.31 E-value=3e+02 Score=19.75 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=18.2
Q ss_pred HHHHHHhcccccHHH---HHHHHHHHHHHH-HHccC
Q 034777 44 LAGFFLFEEQLSFQW---FAGALFIVVGVL-ILSKS 75 (84)
Q Consensus 44 l~g~~~f~E~l~~~~---~~G~~lIi~Gv~-ll~~~ 75 (84)
+.+.+..+ -+++.| ++|..=|..|+- +++++
T Consensus 44 l~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 44 LLGAFGLL-FIPPEWILGLLGLIPIYLGIKALFSGE 78 (191)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333333 444444 488999999997 34434
No 156
>PRK14768 lipoprotein signal peptidase; Provisional
Probab=20.90 E-value=2.8e+02 Score=18.81 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=13.0
Q ss_pred hcccccHHHHHHHHHHHHHHH
Q 034777 50 FEEQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 50 f~E~l~~~~~~G~~lIi~Gv~ 70 (84)
...+-+.....|..+|+.|.+
T Consensus 76 ~~~~~~~~~~~~l~lI~gGa~ 96 (148)
T PRK14768 76 NTRKVHIFGRLGIILIISGAL 96 (148)
T ss_pred HhccccHHHHHHHHHHHHHHH
Confidence 333444555577788887765
No 157
>TIGR00304 conserved hypothetical protein TIGR00304. The member of this family from Pyrococcus horikoshii scores only 13.91 bits, largely because it is at least 15 residues shorter than other members of this family of small proteins and is penalized for not matching to the N-terminal section of the model. Cutoff scores are set so this hit is between noise and trusted cutoffs.
Probab=20.89 E-value=1.5e+02 Score=18.61 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 034777 60 AGALFIVVGVLI 71 (84)
Q Consensus 60 ~G~~lIi~Gv~l 71 (84)
+|..++..|.++
T Consensus 16 iGfilv~lG~~l 27 (77)
T TIGR00304 16 IGFLLTFLGGAL 27 (77)
T ss_pred HHHHHHHHHHHH
Confidence 444444455444
No 158
>PRK14788 lipoprotein signal peptidase; Provisional
Probab=20.42 E-value=2.9e+02 Score=19.98 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=18.4
Q ss_pred HHHHHHHhc---ccccHHHHHHHHHHHHHHH
Q 034777 43 GLAGFFLFE---EQLSFQWFAGALFIVVGVL 70 (84)
Q Consensus 43 ~l~g~~~f~---E~l~~~~~~G~~lIi~Gv~ 70 (84)
+.+.+++++ ++.+...-+|..+|+.|.+
T Consensus 72 ~~i~~~l~~~~~~~~~~~~~ial~LIlGGAi 102 (200)
T PRK14788 72 GGIGYYLWKLVKKNSSKGLIICISLILAGAI 102 (200)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHh
Confidence 334445543 4455666689999999987
No 159
>TIGR03049 PS_I_psaK photosystem I reaction center subunit PsaK. Members of this protein family are the PsaK of the photosystem I reaction center. Photosystems I and II occur together in the same sets of organisms. Photosystem I uses light energy to transfer electrons from plastocyanin to ferredoxin, while photosystem II uses light energy to split water and releases molecular oxygen.
Probab=20.36 E-value=1.7e+02 Score=18.58 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhccc-CceeeeehhhhHHHHHHHHHHHHHhcc
Q 034777 5 GLVILFNVAMWGCYINSLRVL-SSLQATVTNFATNFLSSGLAGFFLFEE 52 (84)
Q Consensus 5 ~l~~~~n~~mw~~y~kaL~~~-~s~~ati~~~s~n~v~t~l~g~~~f~E 52 (84)
..|++||.+....-..+.|.. ....-+.-++--++-...+++---||+
T Consensus 17 iIMI~cNilai~igk~~I~~p~~Gp~lP~~~~f~g~~~~~lLat~s~GH 65 (81)
T TIGR03049 17 IIMILCNVLAIAIGRYTIQYPNVGPKLPNSAFFGGFGLPELLATTSFGH 65 (81)
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCCCCCCChhhhCCCCHHHHHHHhhhHH
Confidence 468999999999988888873 222223333434455556666555553
No 160
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=20.20 E-value=1.1e+02 Score=25.01 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHHHHHc--cCCCccc
Q 034777 54 LSFQWFAGALFIVVGVLILS--KSSIEMK 80 (84)
Q Consensus 54 l~~~~~~G~~lIi~Gv~ll~--~~~~~~~ 80 (84)
++.-+|+.+.++++|++++. ++.++++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~~~~ 282 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGREAP 282 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 67788999999999988764 3344443
Done!