Query 034777
Match_columns 84
No_of_seqs 105 out of 431
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.4 2.9E-12 1E-16 82.8 8.5 74 4-77 33-106 (110)
2 2i68_A Protein EMRE; transmemb 99.3 1.6E-12 5.6E-17 87.7 6.4 73 4-76 33-105 (137)
3 3bz1_X Photosystem II PSBX pro 49.7 32 0.0011 19.2 4.9 44 25-80 5-48 (50)
4 3rko_J NADH-quinone oxidoreduc 41.1 37 0.0013 23.3 4.2 36 43-78 127-164 (184)
5 2ls4_A High affinity copper up 31.6 15 0.0005 17.9 0.0 18 38-55 8-25 (26)
6 3j01_B Preprotein translocase 23.8 16 0.00054 23.4 -0.1 25 39-63 14-38 (116)
7 2ks1_B Epidermal growth factor 19.9 1E+02 0.0035 16.4 2.7 16 64-79 26-41 (44)
8 3arc_X Photosystem II PSBX pro 19.0 1.2E+02 0.004 16.0 4.2 15 35-49 5-19 (39)
9 4dx5_A Acriflavine resistance 17.4 1.9E+02 0.0065 23.9 5.0 28 41-69 910-937 (1057)
10 2l2t_A Receptor tyrosine-prote 16.1 1.5E+02 0.005 15.8 3.0 17 62-78 23-39 (44)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.37 E-value=2.9e-12 Score=82.83 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCC
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSI 77 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~ 77 (84)
..+.+++..+.+.++.+|+|..|..+|...-.+.+++++++.|+++|||++|+++++|+.+|+.|+++++..++
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~ 106 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677889999999999999998877777766788999999999999999999999999999999999988653
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.34 E-value=1.6e-12 Score=87.66 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCC
Q 034777 4 YGLVILFNVAMWGCYINSLRVLSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSS 76 (84)
Q Consensus 4 ~~l~~~~n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~ 76 (84)
..+.+++.++.+.++.+|+|..|..+|...-.++++++++++|+++|||++|+++++|+++|++|++++++.+
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3577889999999999999998877777765577899999999999999999999999999999999997753
No 3
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=49.73 E-value=32 Score=19.20 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=26.0
Q ss_pred cCceeeeehhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHccCCCccc
Q 034777 25 LSSLQATVTNFATNFLSSGLAGFFLFEEQLSFQWFAGALFIVVGVLILSKSSIEMK 80 (84)
Q Consensus 25 ~~s~~ati~~~s~n~v~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv~ll~~~~~~~~ 80 (84)
.++..++++....||+.+.+.|-++. ..|..+++.+++.++-++
T Consensus 5 ~~~~l~~mTpSL~NFl~SlvaG~vVv------------v~i~~aLi~VSq~D~v~R 48 (50)
T 3bz1_X 5 ASSLLLTITPSLKGFFIGLLSGAVVL------------GLTFAVLIAISQIDKVQR 48 (50)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHTTCCCC-
T ss_pred hhhHHhhcCHHHHHHHHHHHHHHHHH------------HHHHHHheeeeccCcccc
Confidence 34567778888889999998886652 225566667777655444
No 4
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=41.06 E-value=37 Score=23.30 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHH--HHHHHHHccCCCc
Q 034777 43 GLAGFFLFEEQLSFQWFAGALFI--VVGVLILSKSSIE 78 (84)
Q Consensus 43 ~l~g~~~f~E~l~~~~~~G~~lI--i~Gv~ll~~~~~~ 78 (84)
--+|..+|++.+=|-...++.|. ++|.+.++++.++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~~~ 164 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERA 164 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45788999999999999999988 5688888887444
No 5
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=31.61 E-value=15 Score=17.88 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhccccc
Q 034777 38 NFLSSGLAGFFLFEEQLS 55 (84)
Q Consensus 38 n~v~t~l~g~~~f~E~l~ 55 (84)
..++.+.+|+++|+.+-+
T Consensus 8 avvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 8 AVAAGAGTGYFLFSWKKX 25 (26)
Confidence 357788899999987643
No 6
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=23.80 E-value=16 Score=23.40 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHH
Q 034777 39 FLSSGLAGFFLFEEQLSFQWFAGAL 63 (84)
Q Consensus 39 ~v~t~l~g~~~f~E~l~~~~~~G~~ 63 (84)
.+..+++|+..|.|.-.+.+..+..
T Consensus 14 l~~~~v~g~~~~~~~~~~~R~~~~~ 38 (116)
T 3j01_B 14 LLLVAIVGNYLYRDIMLPLRALAVV 38 (116)
T ss_dssp HHTTHHHHHHHTTTCCSCSSCCCTH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 5667889999999877777776655
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.86 E-value=1e+02 Score=16.42 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=6.2
Q ss_pred HHHHHHHHHccCCCcc
Q 034777 64 FIVVGVLILSKSSIEM 79 (84)
Q Consensus 64 lIi~Gv~ll~~~~~~~ 79 (84)
.|..++++.-+..+++
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 3444444433333333
No 8
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=19.00 E-value=1.2e+02 Score=15.98 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHH
Q 034777 35 FATNFLSSGLAGFFL 49 (84)
Q Consensus 35 ~s~n~v~t~l~g~~~ 49 (84)
...||+.+.+.|-++
T Consensus 5 SL~nFl~Sl~aG~vv 19 (39)
T 3arc_X 5 SLKGFFIGLLSGAVV 19 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 345777777776544
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=17.44 E-value=1.9e+02 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 034777 41 SSGLAGFFLFEEQLSFQWFAGALFIVVGV 69 (84)
Q Consensus 41 ~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv 69 (84)
..++.+..+++.+++..-.+|+.++ +|+
T Consensus 910 ~~~~~~l~~~g~~l~~~~~~g~i~l-~Gi 937 (1057)
T 4dx5_A 910 IGALLAATFRGLTNDVYFQVGLLTT-IGL 937 (1057)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHH-HHH
Confidence 4456677889999999999998765 443
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=16.09 E-value=1.5e+02 Score=15.82 Aligned_cols=17 Identities=0% Similarity=0.026 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHccCCCc
Q 034777 62 ALFIVVGVLILSKSSIE 78 (84)
Q Consensus 62 ~~lIi~Gv~ll~~~~~~ 78 (84)
++.|..++++.-+..++
T Consensus 23 v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 33444444444343333
Done!