Query 034777
Match_columns 84
No_of_seqs 105 out of 431
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 10:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034777.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034777hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 15.3 1.3E+02 0.0094 18.6 5.1 29 41-69 96-124 (222)
2 d1ppjw_ f.23.14.1 (W:) Subunit 13.8 25 0.0018 19.0 0.6 18 37-54 18-35 (62)
3 d2p7tc1 f.14.1.1 (C:86-119) Po 8.5 1.2E+02 0.0086 14.0 2.0 17 36-52 17-33 (34)
4 d1rh5b_ f.23.28.1 (B:) Preprot 7.1 1.8E+02 0.013 15.0 2.6 23 28-50 23-45 (56)
5 d1deeg_ a.8.1.1 (G:) Immunoglo 5.4 58 0.0042 16.8 -0.2 19 16-34 21-39 (51)
6 d1fc2c_ a.8.1.1 (C:) Immunoglo 5.3 68 0.0049 16.0 0.1 17 16-32 24-40 (44)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 4.6 2.2E+02 0.016 13.2 2.3 16 37-52 11-26 (34)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 4.5 2.8E+02 0.02 14.7 2.6 24 50-73 57-83 (103)
9 d1bu2a2 a.74.1.1 (A:149-250) V 4.4 76 0.0056 18.1 -0.2 26 11-43 65-90 (102)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 4.2 2.5E+02 0.018 13.2 2.0 12 39-50 25-36 (37)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.29 E-value=1.3e+02 Score=18.59 Aligned_cols=29 Identities=10% Similarity=-0.099 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 034777 41 SSGLAGFFLFEEQLSFQWFAGALFIVVGV 69 (84)
Q Consensus 41 ~t~l~g~~~f~E~l~~~~~~G~~lIi~Gv 69 (84)
..++.+.++++.+++..-..|..+.+...
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhh
Confidence 45677788899999999998888765543
No 2
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.83 E-value=25 Score=18.98 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhcccc
Q 034777 37 TNFLSSGLAGFFLFEEQL 54 (84)
Q Consensus 37 ~n~v~t~l~g~~~f~E~l 54 (84)
.-|+.+.+.|.++|....
T Consensus 18 Stf~~tI~~gAf~fE~~f 35 (62)
T d1ppjw_ 18 STFALTIVVGALFFERAF 35 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 347888888888776543
No 3
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=8.50 E-value=1.2e+02 Score=14.03 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHhcc
Q 034777 36 ATNFLSSGLAGFFLFEE 52 (84)
Q Consensus 36 s~n~v~t~l~g~~~f~E 52 (84)
|.+.+..++..|++=+|
T Consensus 17 s~glv~aa~atwfvgre 33 (34)
T d2p7tc1 17 SFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhccc
Confidence 33457777777766444
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.10 E-value=1.8e+02 Score=14.97 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.0
Q ss_pred eeeeehhhhHHHHHHHHHHHHHh
Q 034777 28 LQATVTNFATNFLSSGLAGFFLF 50 (84)
Q Consensus 28 ~~ati~~~s~n~v~t~l~g~~~f 50 (84)
..-+...++.|+.+..+.|++++
T Consensus 23 f~~ia~v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 23 YLAVAKVTALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777888888888764
No 5
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=5.38 E-value=58 Score=16.78 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=13.2
Q ss_pred HHHHHHhcccCceeeeehh
Q 034777 16 GCYINSLRVLSSLQATVTN 34 (84)
Q Consensus 16 ~~y~kaL~~~~s~~ati~~ 34 (84)
.-|.++||..||..+-+.+
T Consensus 21 n~fI~sLkddPs~sanvl~ 39 (51)
T d1deeg_ 21 NGFIQSLKDDPSQSTNVLG 39 (51)
T ss_dssp HHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHH
Confidence 3588899998876555443
No 6
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=5.30 E-value=68 Score=16.02 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=11.8
Q ss_pred HHHHHHhcccCceeeee
Q 034777 16 GCYINSLRVLSSLQATV 32 (84)
Q Consensus 16 ~~y~kaL~~~~s~~ati 32 (84)
.-|..+||..||.-+-+
T Consensus 24 n~fI~SLkDDPsqSan~ 40 (44)
T d1fc2c_ 24 NGFIQSLKDDPSQSANL 40 (44)
T ss_dssp HHHHHHHHHCTTTTTCC
T ss_pred HHHHHHhccCchhhHHH
Confidence 35788899887755443
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.61 E-value=2.2e+02 Score=13.19 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhcc
Q 034777 37 TNFLSSGLAGFFLFEE 52 (84)
Q Consensus 37 ~n~v~t~l~g~~~f~E 52 (84)
.+...-.+.|.|+++.
T Consensus 11 ~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 11 AGMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhhhhHhheeeeeeee
Confidence 3455666777777764
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.54 E-value=2.8e+02 Score=14.68 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=16.9
Q ss_pred hcccc---cHHHHHHHHHHHHHHHHHc
Q 034777 50 FEEQL---SFQWFAGALFIVVGVLILS 73 (84)
Q Consensus 50 f~E~l---~~~~~~G~~lIi~Gv~ll~ 73 (84)
|||-. ++-+++.+..++.|+.+.+
T Consensus 57 YGDi~P~t~~gr~~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 57 YGDLYPVTLWGRCVAVVVMVAGITSFG 83 (103)
T ss_dssp CSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccCChhHHHHHHHHHHHHHHHHH
Confidence 57732 3457888888898887654
No 9
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=4.41 E-value=76 Score=18.12 Aligned_cols=26 Identities=35% Similarity=0.773 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcccCceeeeehhhhHHHHHHH
Q 034777 11 NVAMWGCYINSLRVLSSLQATVTNFATNFLSSG 43 (84)
Q Consensus 11 n~~mw~~y~kaL~~~~s~~ati~~~s~n~v~t~ 43 (84)
|.-.|.+|.+-|. .|.|+|.|.+=++
T Consensus 65 n~~~wt~yledl~-------~ilnfstntirt~ 90 (102)
T d1bu2a2 65 NCRPWTCYLEDLS-------SILNFSTNTVRTV 90 (102)
T ss_dssp SCSTHHHHGGGTT-------TCSSHHHHHHHHH
T ss_pred CccchHHHHHhhH-------HHhccccchhhHH
Confidence 4456888875442 4678888877554
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.18 E-value=2.5e+02 Score=13.18 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHh
Q 034777 39 FLSSGLAGFFLF 50 (84)
Q Consensus 39 ~v~t~l~g~~~f 50 (84)
|++..+++-.+|
T Consensus 25 fvl~vLFssYfF 36 (37)
T d2axtl1 25 LVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 445555555554
Done!