BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034779
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14056|COX19_SCHPO Cytochrome c oxidase assembly protein cox19, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox19 PE=3 SV=2
Length = 112
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 6 AFGGNRGARPV----PPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLE 61
+FG G+ P+ PPE+G FPLDH +C K Y+ C+K E CR+ +KKYL+
Sbjct: 2 SFGAAGGSLPMTTREPPERGSFPLDHFGECTHVMKQYLECIKVKRENQEECRLLAKKYLQ 61
Query: 62 CRM 64
CRM
Sbjct: 62 CRM 64
>sp|Q6FVQ3|COX19_CANGA Cytochrome c oxidase assembly protein COX19 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=COX19 PE=3 SV=1
Length = 86
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQ-SENCRIFSKKY 59
MS+G G R P PPE+G FPLDH +C + Y+ C++ + ++ + NCR+ +K Y
Sbjct: 1 MSSGNPGGALRALSPTPPERGSFPLDHDGECAEYMQKYLQCMRLAANENAHNCRLLAKDY 60
Query: 60 LECRM 64
L+CRM
Sbjct: 61 LKCRM 65
>sp|A8E4L1|COX19_BOVIN Cytochrome c oxidase assembly protein COX19 OS=Bos taurus
GN=COX19 PE=2 SV=1
Length = 89
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60
MS FG ++ +P PP+KG FPLDH +C K+ ++ CL+ + ++ CR SK+YL
Sbjct: 1 MSTAMNFG-SKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYL 59
Query: 61 ECRMAKNAQSMHSL 74
ECRM + + L
Sbjct: 60 ECRMERQLMAQEPL 73
>sp|Q6CS47|COX19_KLULA Cytochrome c oxidase assembly protein COX19 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=COX19 PE=3 SV=1
Length = 99
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 11 RGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRM 64
+ P PPE+G FPLDH C + ++Y+ C+K G + NCR+ +K+YL+CRM
Sbjct: 10 KALSPTPPERGSFPLDHDGDCTKQMQEYLSCIKLVKGENAPNCRLLAKEYLKCRM 64
>sp|P0CM86|COX19_CRYNJ Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=COX19 PE=3 SV=1
Length = 115
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 14 RPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAK 66
+P PP +G FPLDH +C Y+ C+K + + + CR+FSK+YLECRM K
Sbjct: 13 KPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLECRMDK 65
>sp|P0CM87|COX19_CRYNB Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=COX19 PE=3 SV=1
Length = 115
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 14 RPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAK 66
+P PP +G FPLDH +C Y+ C+K + + + CR+FSK+YLECRM K
Sbjct: 13 KPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLECRMDK 65
>sp|Q5AL10|COX19_CANAL Cytochrome c oxidase assembly protein COX19 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=COX19 PE=3 SV=1
Length = 133
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 7 FGGN-RGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRM 64
GGN R P PPE+G FPLDH +C Y+ C+K + + NCRI +K+YL+CRM
Sbjct: 7 IGGNFRTWTPTPPERGSFPLDHDGECKEYMTKYLTCMKFTENKNAPNCRILAKQYLKCRM 66
>sp|Q49B96|COX19_HUMAN Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens
GN=COX19 PE=1 SV=1
Length = 90
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60
MS FG + +P PP+KG FPLDH+ +C K+ ++ CL ++ ++ CR SK+YL
Sbjct: 1 MSTAMNFG-TKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYL 59
Query: 61 ECRMAK 66
ECRM +
Sbjct: 60 ECRMER 65
>sp|Q462Q7|COX19_PARBR Cytochrome c oxidase assembly protein COX19 OS=Paracoccidioides
brasiliensis GN=COX19 PE=3 SV=1
Length = 107
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGH-QSENCRIFSKKY 59
MS G G + +P PPE+G FPLDH +C Y+ CLK G E CR +K Y
Sbjct: 1 MSFGSPGGRSVNIKPKPPERGSFPLDHDGECKFIISSYLQCLKKGGGVNDETCRKLAKSY 60
Query: 60 LECRMAKN 67
L CRM N
Sbjct: 61 LSCRMDHN 68
>sp|Q75AF9|COX19_ASHGO Cytochrome c oxidase assembly protein COX19 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COX19 PE=3 SV=2
Length = 99
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 15 PVPPEKGVFPLDHMHQCDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRM 64
P PPE+G FPLDH +C + +Y+ C+K G + NCR+ ++ YL+CRM
Sbjct: 14 PTPPERGSFPLDHEGECTAQMMEYLNCMKLVRGENAPNCRLLARNYLKCRM 64
>sp|Q8K0C8|COX19_MOUSE Cytochrome c oxidase assembly protein COX19 OS=Mus musculus
GN=Cox19 PE=3 SV=1
Length = 92
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60
MS FG + +P PP+KG FPLDH +C K+ ++ CL+ +++ CR SK+YL
Sbjct: 1 MSTAMNFG-TKSFQPRPPDKGSFPLDHFGECKSFKEKFMRCLRDKNYENALCRNESKEYL 59
Query: 61 ECRMAKNAQSMHSL 74
CRM + + L
Sbjct: 60 MCRMQRQLMAPEPL 73
>sp|Q54IA0|COX19_DICDI Cytochrome c oxidase assembly protein COX19 OS=Dictyostelium
discoideum GN=cox19 PE=3 SV=1
Length = 106
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 14 RPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNAQSMHS 73
+P PP+KG FPLDH +C Y+ CL + S C FSK+YL+CRM N +
Sbjct: 11 KPTPPDKGSFPLDHDSECSKPMLAYVNCLSENNGLSRFCMEFSKEYLKCRMDNNLMAKED 70
Query: 74 LVHW 77
+ ++
Sbjct: 71 MDNF 74
>sp|Q3E731|COX19_YEAST Cytochrome c oxidase assembly protein COX19 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX19 PE=1
SV=1
Length = 98
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 7 FGGNRGA-----RPVPPEKGVFPLDHMHQCDLEKKDYIGCLK-SSGHQSENCRIFSKKYL 60
GN G+ RP PPE+G FPLDH +C ++Y+ C++ + NCR+ +K YL
Sbjct: 1 MSGNPGSSLSALRPTPPERGSFPLDHDGECTKYMQEYLKCMQLVQNENAMNCRLLAKDYL 60
Query: 61 ECRM 64
CRM
Sbjct: 61 RCRM 64
>sp|Q4P821|COX19_USTMA Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=COX19 PE=3 SV=1
Length = 197
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 17 PPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAK 66
PPE+G FPLDH +C ++Y+ C+K + + + CR S+ YL+CRM K
Sbjct: 16 PPERGSFPLDHDGECKSVMQEYMNCIKYNRNDNGKCRHLSRAYLQCRMDK 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,491,104
Number of Sequences: 539616
Number of extensions: 1170231
Number of successful extensions: 2307
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2278
Number of HSP's gapped (non-prelim): 23
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)