Query 034779
Match_columns 84
No_of_seqs 106 out of 151
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 06:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3477 Putative cytochrome c 100.0 2.9E-44 6.4E-49 243.9 5.5 80 1-81 1-80 (97)
2 PF06747 CHCH: CHCH domain; I 99.0 1.4E-10 2.9E-15 63.7 2.5 35 31-65 1-35 (35)
3 KOG4695 Uncharacterized conser 94.4 0.052 1.1E-06 38.8 3.4 36 28-63 45-80 (122)
4 PF08991 DUF1903: Domain of un 93.3 0.12 2.5E-06 33.1 3.2 35 30-64 3-37 (67)
5 cd00926 Cyt_c_Oxidase_VIb Cyto 91.1 0.38 8.2E-06 31.1 3.6 40 21-60 12-52 (75)
6 PF05676 NDUF_B7: NADH-ubiquin 90.5 0.19 4.1E-06 32.2 1.8 43 23-65 14-56 (66)
7 KOG4618 Uncharacterized conser 85.2 1.2 2.7E-05 29.5 3.2 35 29-63 22-56 (74)
8 PF10203 Pet191_N: Cytochrome 84.5 0.9 2E-05 29.0 2.2 27 38-64 29-56 (68)
9 PF02297 COX6B: Cytochrome oxi 84.1 1.1 2.3E-05 28.4 2.4 33 30-62 11-53 (76)
10 PF10200 Ndufs5: NADH:ubiquino 73.4 6.6 0.00014 26.8 3.8 43 24-66 26-70 (96)
11 KOG3057 Cytochrome c oxidase, 72.3 7.2 0.00016 27.6 3.9 43 18-60 44-87 (112)
12 PF08583 Cmc1: Cytochrome c ox 71.6 3.7 8.1E-05 24.5 2.1 35 29-63 11-46 (69)
13 KOG4090 Uncharacterized conser 67.1 8.1 0.00018 28.8 3.4 46 23-68 110-155 (157)
14 KOG4083 Head-elevated expressi 64.2 5.8 0.00013 30.3 2.2 37 27-63 144-180 (192)
15 PF05051 COX17: Cytochrome C o 63.7 14 0.00031 22.7 3.5 30 31-62 12-41 (49)
16 PF05051 COX17: Cytochrome C o 62.7 9 0.00019 23.5 2.5 18 31-48 31-48 (49)
17 KOG3481 Uncharacterized conser 62.6 14 0.0003 25.2 3.6 47 29-75 11-68 (87)
18 PF10249 NDUFB10: NADH-ubiquin 59.4 15 0.00033 26.2 3.5 26 36-61 68-94 (128)
19 PHA03005 sulfhydryl oxidase; P 55.8 11 0.00023 26.2 2.2 44 23-74 21-65 (96)
20 PLN03079 Uncharacterized prote 52.4 50 0.0011 22.6 5.0 36 30-65 17-60 (91)
21 KOG3458 NADH:ubiquinone oxidor 48.3 15 0.00033 27.6 2.1 37 30-66 77-114 (170)
22 PF07956 DUF1690: Protein of U 44.7 37 0.00079 24.2 3.6 36 27-62 105-140 (142)
23 PF04805 Pox_E10: E10-like pro 43.3 23 0.00051 23.3 2.2 24 48-74 17-40 (70)
24 KOG4114 Cytochrome c oxidase a 39.7 27 0.00058 23.2 2.1 16 48-63 41-56 (73)
25 KOG4110 NADH:ubiquinone oxidor 36.0 64 0.0014 23.1 3.7 50 18-67 22-75 (120)
26 PF05254 UPF0203: Uncharacteri 34.5 68 0.0015 20.3 3.3 36 30-65 8-51 (68)
27 PF01111 CKS: Cyclin-dependent 34.4 15 0.00033 23.9 0.3 25 56-80 21-45 (70)
28 PF02320 UCR_hinge: Ubiquinol- 33.0 71 0.0015 20.0 3.2 35 29-63 15-52 (65)
29 PF15628 RRM_DME: RRM in Demet 32.8 19 0.00041 25.2 0.6 8 19-26 11-18 (103)
30 PLN00010 cyclin-dependent kina 25.9 19 0.00042 24.4 -0.3 16 65-80 32-47 (86)
31 PF07802 GCK: GCK domain; Int 25.1 1.1E+02 0.0023 20.0 3.1 35 28-62 11-50 (76)
32 PF11001 DUF2841: Protein of u 24.7 1.4E+02 0.003 21.1 3.8 26 34-61 9-34 (126)
33 KOG3584 cAMP response element 22.9 34 0.00073 28.3 0.5 21 43-63 297-317 (348)
34 KOG3846 L-kynurenine hydrolase 22.5 36 0.00078 28.8 0.6 17 13-29 149-171 (465)
35 KOG3484 Cyclin-dependent prote 22.4 25 0.00055 24.1 -0.3 16 65-80 34-49 (91)
36 KOG3496 Cytochrome c oxidase a 21.6 86 0.0019 20.7 2.1 20 29-48 52-71 (72)
37 KOG3468 NADH:ubiquinone oxidor 21.3 47 0.001 24.0 0.9 45 24-68 50-94 (128)
No 1
>KOG3477 consensus Putative cytochrome c oxidase, subunit COX19 [Energy production and conversion]
Probab=100.00 E-value=2.9e-44 Score=243.94 Aligned_cols=80 Identities=50% Similarity=0.991 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccccCCCCcccccccccc
Q 034779 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNAQSMHSLVHWERD 80 (84)
Q Consensus 1 Ms~G~pgg~~~~~~ptpPerGSFPLDH~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~LM~kdd~~nlg~~ 80 (84)
|| ++++++.+..+|+||+||||||||+|||+.+|+.||.||+....++++||.+||+||+|||+++||++|||.+|||.
T Consensus 1 MS-~~g~~~~r~lrp~pPekGsFPLDH~geC~~em~eYl~Cl~~k~e~~~eCR~laK~YlqCRMdh~Lmdkdd~~~LG~~ 79 (97)
T KOG3477|consen 1 MS-TGGAGGNRGLRPIPPEKGSFPLDHLGECTAEMKEYLGCLKSKAENSEECRLLAKKYLQCRMDHGLMDKDDMAELGFS 79 (97)
T ss_pred CC-CCCCCCcccccCCCcccCCcCCCcccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccccHHHHHHcCCC
Confidence 78 55668899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 034779 81 N 81 (84)
Q Consensus 81 ~ 81 (84)
.
T Consensus 80 ~ 80 (97)
T KOG3477|consen 80 G 80 (97)
T ss_pred c
Confidence 6
No 2
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=99.04 E-value=1.4e-10 Score=63.69 Aligned_cols=35 Identities=43% Similarity=0.789 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccc
Q 034779 31 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMA 65 (84)
Q Consensus 31 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd 65 (84)
|..+|..|+.||++|+.+.+.||.+++.|++|||+
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~~ 35 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKECRMK 35 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhhC
Confidence 78999999999999999999999999999999985
No 3
>KOG4695 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.052 Score=38.77 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 034779 28 MHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (84)
Q Consensus 28 ~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (84)
+-.|..+|..-+.|||.|...+..||+.-.-|+.|-
T Consensus 45 ~~tC~qEm~vlfaClK~nEF~d~~C~Kei~~f~dC~ 80 (122)
T KOG4695|consen 45 EATCIQEMSVLFACLKQNEFRDDACRKEIQGFLDCA 80 (122)
T ss_pred chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999994
No 4
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=93.34 E-value=0.12 Score=33.09 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHHHhhccc
Q 034779 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRM 64 (84)
Q Consensus 30 eCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRM 64 (84)
.|+.+.-....||..|+.+.++|..+-.+|-+|.-
T Consensus 3 PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cck 37 (67)
T PF08991_consen 3 PCQKEACAIQKCLQRNNYDESKCQDYIDALYECCK 37 (67)
T ss_dssp TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 48888899999999999999999999999999964
No 5
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=91.15 E-value=0.38 Score=31.06 Aligned_cols=40 Identities=28% Similarity=0.638 Sum_probs=31.6
Q ss_pred CCCC-CCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 034779 21 GVFP-LDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60 (84)
Q Consensus 21 GSFP-LDH~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL 60 (84)
=.|| -----.|-..-..|..||++++.+++.|..+.+.|=
T Consensus 12 ~RfP~~nq~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~e 52 (75)
T cd00926 12 PRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYE 52 (75)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3455 233446777788999999999999999999999883
No 6
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=90.51 E-value=0.19 Score=32.17 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccc
Q 034779 23 FPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMA 65 (84)
Q Consensus 23 FPLDH~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd 65 (84)
-||..-..|-.....|++|.+++-...-+|..+--+|-.|+-+
T Consensus 14 lPl~~RDyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~~C~y~ 56 (66)
T PF05676_consen 14 LPLQYRDYCAHLLIPLNKCRRDNFPFPWKCEHERHEYEKCQYD 56 (66)
T ss_pred CChhhhhhHHHHHHHHHHHHHhCCCCcccCCcchhhHHHccHH
Confidence 5888889999999999999999988889999999999999754
No 7
>KOG4618 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.24 E-value=1.2 Score=29.47 Aligned_cols=35 Identities=26% Similarity=0.624 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 034779 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (84)
.-|-+.-..-++||.+|+.+-++|...--.|=+|+
T Consensus 22 nPCl~es~aSfkCLeennyDRsKCq~yFd~YkeCK 56 (74)
T KOG4618|consen 22 NPCLLESSASFKCLEENNYDRSKCQDYFDVYKECK 56 (74)
T ss_pred ChHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 56888889999999999999999999999998885
No 8
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=84.52 E-value=0.9 Score=28.95 Aligned_cols=27 Identities=30% Similarity=0.706 Sum_probs=19.9
Q ss_pred HHHHHHHc-CCCChhHHHHHHHHhhccc
Q 034779 38 YIGCLKSS-GHQSENCRIFSKKYLECRM 64 (84)
Q Consensus 38 Yl~CLk~~-~~~~~~CR~laK~YL~CRM 64 (84)
+-.||+.+ ..-...|..|-+.|.+|+.
T Consensus 29 ~~~Cl~~~~~~~p~eC~~lr~~f~eCKr 56 (68)
T PF10203_consen 29 PKDCLKDPSDELPEECQQLRKAFFECKR 56 (68)
T ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHHhc
Confidence 34455555 4456799999999999985
No 9
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=84.07 E-value=1.1 Score=28.43 Aligned_cols=33 Identities=33% Similarity=0.886 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHHHcCC---------CChhHHHHHHHHhh-c
Q 034779 30 QCDLEKKDYIGCLKSSGH---------QSENCRIFSKKYLE-C 62 (84)
Q Consensus 30 eCk~~m~~Yl~CLk~~~~---------~~~~CR~laK~YL~-C 62 (84)
.|=..-..|..||..++. +...|..+-+.|-+ |
T Consensus 11 ~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~C 53 (76)
T PF02297_consen 11 KCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNC 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhC
Confidence 477778899999999988 88999999999965 6
No 10
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=73.36 E-value=6.6 Score=26.81 Aligned_cols=43 Identities=23% Similarity=0.624 Sum_probs=35.0
Q ss_pred CCCCcccchHHHHHHHHHHHHcCCC--ChhHHHHHHHHhhccccc
Q 034779 24 PLDHMHQCDLEKKDYIGCLKSSGHQ--SENCRIFSKKYLECRMAK 66 (84)
Q Consensus 24 PLDH~geCk~~m~~Yl~CLk~~~~~--~~~CR~laK~YL~CRMd~ 66 (84)
|--..+-|-.+-.+|+.|+...+.. ...|+.+--+|++|-.-.
T Consensus 26 ~~~~~~RC~~FE~e~i~C~~~~G~~r~kKeC~~e~EDy~EClh~~ 70 (96)
T PF10200_consen 26 PYKQPSRCHPFEKEWIECAEAYGQTRGKKECKLELEDYYECLHHT 70 (96)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcccchhhhchhHHhHHHHHHhhH
Confidence 4455678999999999999887553 469999999999997643
No 11
>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]
Probab=72.34 E-value=7.2 Score=27.58 Aligned_cols=43 Identities=30% Similarity=0.682 Sum_probs=33.6
Q ss_pred CCCCCCC-CCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 034779 18 PEKGVFP-LDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60 (84)
Q Consensus 18 PerGSFP-LDH~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL 60 (84)
|--=-|| -..-..|=..-.+|-+|++.++.+...|..+.+.|=
T Consensus 44 p~d~RFP~~nqtrhCf~~y~dyhrC~~~~geD~~~Ck~f~~~y~ 87 (112)
T KOG3057|consen 44 PVDARFPNTNQTRHCFQRYVDYHRCIKAKGEDANPCKKFQKVYR 87 (112)
T ss_pred cccccCCCcchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 3333466 444556777778999999999999999999999994
No 12
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=71.56 E-value=3.7 Score=24.46 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=28.0
Q ss_pred ccchHHHHHHHHHHHHcC-CCChhHHHHHHHHhhcc
Q 034779 29 HQCDLEKKDYIGCLKSSG-HQSENCRIFSKKYLECR 63 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~-~~~~~CR~laK~YL~CR 63 (84)
..|..++..|..|.+... .....||...++.-+|-
T Consensus 11 ~~C~~~i~~~~~C~~~~~~~~~~~C~~~~~~m~~Cl 46 (69)
T PF08583_consen 11 KKCADEIEAFAECHKDRTFKFVGKCREEKKAMNECL 46 (69)
T ss_pred HHhHHHHHHHHHHHhcchHHHHHhhhHHHHHHHHHH
Confidence 579999999999999853 35578999888888773
No 13
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.10 E-value=8.1 Score=28.76 Aligned_cols=46 Identities=17% Similarity=0.504 Sum_probs=38.2
Q ss_pred CCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccccCC
Q 034779 23 FPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNA 68 (84)
Q Consensus 23 FPLDH~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~L 68 (84)
-|----+-|.-+.+.|+.|+..++.+.+.|--+-.--=+|+-.+.|
T Consensus 110 q~~q~~~~C~~e~kqF~dCa~~~~~d~slC~~f~e~Lk~Ck~~~~~ 155 (157)
T KOG4090|consen 110 QPAQQQQPCFIEIKQFLDCAQNQGSDISLCEGYNEMLKQCKKNSGL 155 (157)
T ss_pred chhhhcCchHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcc
Confidence 4445567799999999999999999999999888877788866554
No 14
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=64.25 E-value=5.8 Score=30.33 Aligned_cols=37 Identities=11% Similarity=0.390 Sum_probs=33.0
Q ss_pred CcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 034779 27 HMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (84)
Q Consensus 27 H~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (84)
-.-.|......+|.|++.|-...-+|-.|++.|-.|-
T Consensus 144 ~~pvCqdlq~qil~Cyr~~p~e~LkC~~lv~af~~Cv 180 (192)
T KOG4083|consen 144 REPVCQDLQAQILRCYRENPGEVLKCSPLVAAFMKCV 180 (192)
T ss_pred cCCcccccHHHHHHHHhcCCCccccccHHHHHHHHHH
Confidence 4456888889999999999888899999999999994
No 15
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=63.69 E-value=14 Score=22.67 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 034779 31 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (84)
Q Consensus 31 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~C 62 (84)
|......==.|+-.|+.++ |+.+...|-+|
T Consensus 12 CpetK~aRDeC~l~~g~e~--C~~~Ieahk~C 41 (49)
T PF05051_consen 12 CPETKKARDECILFNGEED--CKELIEAHKAC 41 (49)
T ss_dssp SHHHHHHHHHHHHHC-CCC--CHHHHHHHHHH
T ss_pred ChhHHHHhHhhHHhcChHH--HHHHHHHHHHH
Confidence 5555555566666665555 66666666666
No 16
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=62.68 E-value=9 Score=23.55 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHcCCC
Q 034779 31 CDLEKKDYIGCLKSSGHQ 48 (84)
Q Consensus 31 Ck~~m~~Yl~CLk~~~~~ 48 (84)
|+..+..|-+||+..|.+
T Consensus 31 C~~~Ieahk~Cmr~~GF~ 48 (49)
T PF05051_consen 31 CKELIEAHKACMRGEGFK 48 (49)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999998764
No 17
>KOG3481 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.59 E-value=14 Score=25.23 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHHHc--------CCCChhHHHHHHHHhhccc---ccCCCCccccc
Q 034779 29 HQCDLEKKDYIGCLKSS--------GHQSENCRIFSKKYLECRM---AKNAQSMHSLV 75 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~--------~~~~~~CR~laK~YL~CRM---d~~LM~kdd~~ 75 (84)
-||++....|=+|.-+- ......|-.|=+.|.+|-- +..++.+.+++
T Consensus 11 ~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal~tk~i~~~~Le 68 (87)
T KOG3481|consen 11 PECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKALKTKRIFPIGLE 68 (87)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHHhhcCCChhhhH
Confidence 48999999999997542 3456799999999999953 34555555444
No 18
>PF10249 NDUFB10: NADH-ubiquinone oxidoreductase subunit 10; InterPro: IPR019377 NADH-ubiquinone oxidoreductase subunit 10 of (NDUFB10) is a member of a family of conserved proteins of up to 180 residues. It is one of the 41 protein subunits within the hydrophobic fraction of the NADH:ubiquinone oxidoreductase (complex I), a multiprotein complex located in the inner mitochondrial membrane whose main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. NDUFB10 is encoded in the nucleus.
Probab=59.39 E-value=15 Score=26.24 Aligned_cols=26 Identities=27% Similarity=0.640 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCCC-hhHHHHHHHHhh
Q 034779 36 KDYIGCLKSSGHQS-ENCRIFSKKYLE 61 (84)
Q Consensus 36 ~~Yl~CLk~~~~~~-~~CR~laK~YL~ 61 (84)
..+-.|...+|.|. .+|+.+.+.|++
T Consensus 68 eRl~~C~~~EG~nh~qnC~~l~~qy~e 94 (128)
T PF10249_consen 68 ERLEACYRREGVNHYQNCRKLVEQYEE 94 (128)
T ss_pred HHHHHHHHHHCcCHhhhhHHHHHHHHH
Confidence 36778999999999 899999999986
No 19
>PHA03005 sulfhydryl oxidase; Provisional
Probab=55.84 E-value=11 Score=26.16 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCCCCcc-cchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccccCCCCcccc
Q 034779 23 FPLDHMH-QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNAQSMHSL 74 (84)
Q Consensus 23 FPLDH~g-eCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~LM~kdd~ 74 (84)
|+.+|+- -||..+ |.-|- ----+.||..|+++++ ++|.|+..|.
T Consensus 21 ~~~~~~iE~cK~~l--ytI~~---tLPC~~Cr~HA~~ai~---knnimSs~di 65 (96)
T PHA03005 21 AKLDGNIEACKRKL--YTICS---TLPCPACRRHAKEAIE---KNNIMSSNDL 65 (96)
T ss_pred ccCCCcHHHHHHHH--HHhhh---cCCCHHHHHHHHHHHh---hcCccccCCc
Confidence 5667766 577766 54442 2345799999999998 5999998875
No 20
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=52.43 E-value=50 Score=22.58 Aligned_cols=36 Identities=25% Similarity=0.539 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHc-------CC-CChhHHHHHHHHhhcccc
Q 034779 30 QCDLEKKDYIGCLKSS-------GH-QSENCRIFSKKYLECRMA 65 (84)
Q Consensus 30 eCk~~m~~Yl~CLk~~-------~~-~~~~CR~laK~YL~CRMd 65 (84)
+|++.+..|-+|...- |. ....|..+=++|-+|-..
T Consensus 17 eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~ 60 (91)
T PLN03079 17 PCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSE 60 (91)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHH
Confidence 4999999999998632 23 236899999999999764
No 21
>KOG3458 consensus NADH:ubiquinone oxidoreductase, NDUFA8/PGIV/19 kDa subunit [Energy production and conversion]
Probab=48.27 E-value=15 Score=27.61 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHHHc-CCCChhHHHHHHHHhhccccc
Q 034779 30 QCDLEKKDYIGCLKSS-GHQSENCRIFSKKYLECRMAK 66 (84)
Q Consensus 30 eCk~~m~~Yl~CLk~~-~~~~~~CR~laK~YL~CRMd~ 66 (84)
-|-..|.+|..|+-.. .+.=+.||+..+++=+|--++
T Consensus 77 ~C~~e~~~y~~C~dysst~~f~~Crk~Q~~fdkcv~~k 114 (170)
T KOG3458|consen 77 SCLEEFTKYATCMDYSSTNEFSHCRKEQEAFDKCVPDK 114 (170)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhh
Confidence 5889999999999988 555579999999999997765
No 22
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=44.67 E-value=37 Score=24.16 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=31.4
Q ss_pred CcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 034779 27 HMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (84)
Q Consensus 27 H~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~C 62 (84)
|..+++.+-..-+.||+.|..-.-+|-.+..++=.|
T Consensus 105 ~~~~v~~aR~~vv~CL~~N~~rPLnCw~EVe~FKk~ 140 (142)
T PF07956_consen 105 NSEEVEKARSAVVRCLRENDGRPLNCWEEVEAFKKE 140 (142)
T ss_pred cchhhHHHHHHHHHHHHHCCCCCCchHHHHHHHHHH
Confidence 667899999999999999999999999998876544
No 23
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=43.30 E-value=23 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHhhcccccCCCCcccc
Q 034779 48 QSENCRIFSKKYLECRMAKNAQSMHSL 74 (84)
Q Consensus 48 ~~~~CR~laK~YL~CRMd~~LM~kdd~ 74 (84)
--..||..|++=++ ++|.|+.+|.
T Consensus 17 PC~~Cr~HA~~ai~---kNNiMSs~Di 40 (70)
T PF04805_consen 17 PCPECRIHAKEAIQ---KNNIMSSNDI 40 (70)
T ss_pred CCHHHHHHHHHHHH---hcCccccCCc
Confidence 44789999999887 8899999885
No 24
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=39.74 E-value=27 Score=23.17 Aligned_cols=16 Identities=31% Similarity=0.856 Sum_probs=12.3
Q ss_pred CChhHHHHHHHHhhcc
Q 034779 48 QSENCRIFSKKYLECR 63 (84)
Q Consensus 48 ~~~~CR~laK~YL~CR 63 (84)
-.+.|..+-+.|++|.
T Consensus 41 vPeeC~al~~af~dCK 56 (73)
T KOG4114|consen 41 VPEECIALMKAFLDCK 56 (73)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5678888888888883
No 25
>KOG4110 consensus NADH:ubiquinone oxidoreductase, NDUFS5/15kDa [Energy production and conversion]
Probab=36.04 E-value=64 Score=23.13 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=42.1
Q ss_pred CCCCCCCCCCccc-chHHHHHHHHHHHHcCC--CChhHHHHHHHHhhcc-cccC
Q 034779 18 PEKGVFPLDHMHQ-CDLEKKDYIGCLKSSGH--QSENCRIFSKKYLECR-MAKN 67 (84)
Q Consensus 18 PerGSFPLDH~ge-Ck~~m~~Yl~CLk~~~~--~~~~CR~laK~YL~CR-Md~~ 67 (84)
-+-++=|+.|-|. |-.+-++++.|...-|. --..|+.+-.++.+|- |++.
T Consensus 22 tds~~~p~~~q~r~cg~FE~e~~eC~eayG~~~g~keC~ie~~dFqECv~~qKq 75 (120)
T KOG4110|consen 22 TDSTEQPYKHQGRDCGKFEKEWMECAEAYGLERGEKECAIEYDDFQECVLMQKQ 75 (120)
T ss_pred cccccCccccccccccHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999 99999999999998854 3458999999999995 3443
No 26
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=34.49 E-value=68 Score=20.34 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=27.4
Q ss_pred cchHHHHHHHHHHHHc-------CC-CChhHHHHHHHHhhcccc
Q 034779 30 QCDLEKKDYIGCLKSS-------GH-QSENCRIFSKKYLECRMA 65 (84)
Q Consensus 30 eCk~~m~~Yl~CLk~~-------~~-~~~~CR~laK~YL~CRMd 65 (84)
+|+..+..|=+|...- |. ....|..+=+.|-+|-.+
T Consensus 8 eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~ 51 (68)
T PF05254_consen 8 ECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQK 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHH
Confidence 7999999999997542 23 335899999999999643
No 27
>PF01111 CKS: Cyclin-dependent kinase regulatory subunit; InterPro: IPR000789 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In eukaryotes, cyclin-dependent protein kinases interact with cyclins to regulate cell cycle progression, and are required for the G1 and G2 stages of cell division []. The proteins bind to a regulatory subunit, cyclin-dependent kinase regulatory subunit (CKS), which is essential for their function. This regulatory subunit is a small protein of 79 to 150 residues. In yeast (gene CKS1) and in fission yeast (gene suc1) a single isoform is known, while mammals have two highly related isoforms. The regulatory subunits exist as hexamers, formed by the symmetrical assembly of 3 interlocked homodimers, creating an unusual 12-stranded beta-barrel structure []. Through the barrel centre runs a 12A diameter tunnel, lined by 6 exposed helix pairs []. Six kinase units can be modelled to bind the hexameric structure, which may thus act as a hub for cyclin-dependent protein kinase multimerisation [, ].; GO: 0016538 cyclin-dependent protein kinase regulator activity, 0007049 cell cycle; PDB: 1CKS_C 3QY2_B 1QB3_C 1SCE_B 1PUC_A 1DKS_B 2AST_C 1BUH_B 1DKT_B 2ASS_C.
Probab=34.42 E-value=15 Score=23.87 Aligned_cols=25 Identities=8% Similarity=-0.137 Sum_probs=12.3
Q ss_pred HHHHhhcccccCCCCcccccccccc
Q 034779 56 SKKYLECRMAKNAQSMHSLVHWERD 80 (84)
Q Consensus 56 aK~YL~CRMd~~LM~kdd~~nlg~~ 80 (84)
.|+..+---...||+.++|.+||..
T Consensus 21 pk~~~k~vp~~~llsE~EWR~LGIq 45 (70)
T PF01111_consen 21 PKEIAKLVPKDRLLSEEEWRGLGIQ 45 (70)
T ss_dssp -HHHHGTS-CCS---HHHHHHTT--
T ss_pred CHHHHhhCccCcccCHHHHHhhCCc
Confidence 3444443334479999999999975
No 28
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=33.00 E-value=71 Score=20.04 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=27.5
Q ss_pred ccchHHHHHHHHHHHHc---CCCChhHHHHHHHHhhcc
Q 034779 29 HQCDLEKKDYIGCLKSS---GHQSENCRIFSKKYLECR 63 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~---~~~~~~CR~laK~YL~CR 63 (84)
.+|......|-.|..+. .+..+.|-..=-+|+.|.
T Consensus 15 ~~C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCv 52 (65)
T PF02320_consen 15 PKCAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCV 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 46888999999999986 335579999999998884
No 29
>PF15628 RRM_DME: RRM in Demeter
Probab=32.84 E-value=19 Score=25.22 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q 034779 19 EKGVFPLD 26 (84)
Q Consensus 19 erGSFPLD 26 (84)
-||+|||.
T Consensus 11 mrg~FPLn 18 (103)
T PF15628_consen 11 MRGSFPLN 18 (103)
T ss_pred hCCccccC
Confidence 58999984
No 30
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=25.94 E-value=19 Score=24.43 Aligned_cols=16 Identities=6% Similarity=-0.157 Sum_probs=13.6
Q ss_pred ccCCCCcccccccccc
Q 034779 65 AKNAQSMHSLVHWERD 80 (84)
Q Consensus 65 d~~LM~kdd~~nlg~~ 80 (84)
...||+.++|.+||..
T Consensus 32 k~~LL~E~EWR~LGIq 47 (86)
T PLN00010 32 KNRLLSENEWRAIGVQ 47 (86)
T ss_pred cCcccCHHHHHHhccc
Confidence 4579999999999975
No 31
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=25.11 E-value=1.1e+02 Score=20.04 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=24.4
Q ss_pred cccchHHHHHHHHHHHHcC-----CCChhHHHHHHHHhhc
Q 034779 28 MHQCDLEKKDYIGCLKSSG-----HQSENCRIFSKKYLEC 62 (84)
Q Consensus 28 ~geCk~~m~~Yl~CLk~~~-----~~~~~CR~laK~YL~C 62 (84)
-|-|+.....+-.|..+.. ....+|+...-.--.|
T Consensus 11 gG~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kC 50 (76)
T PF07802_consen 11 GGGCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKC 50 (76)
T ss_pred CCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 4789999999999996541 2336898755444444
No 32
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=24.68 E-value=1.4e+02 Score=21.13 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHhh
Q 034779 34 EKKDYIGCLKSSGHQSENCRIFSKKYLE 61 (84)
Q Consensus 34 ~m~~Yl~CLk~~~~~~~~CR~laK~YL~ 61 (84)
+..-|-++++. -+...||..||+|++
T Consensus 9 v~~yy~~~F~~--lqQ~~Ck~IAKawIK 34 (126)
T PF11001_consen 9 VRAYYESAFKA--LQQVNCKQIAKAWIK 34 (126)
T ss_pred HHHHHHHHHHH--cChhHHHHHHHHHHH
Confidence 33445555554 455689999999986
No 33
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=22.92 E-value=34 Score=28.27 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=13.2
Q ss_pred HHcCCCChhHHHHHHHHhhcc
Q 034779 43 KSSGHQSENCRIFSKKYLECR 63 (84)
Q Consensus 43 k~~~~~~~~CR~laK~YL~CR 63 (84)
.+|..-+..||.--|+|.+|-
T Consensus 297 mKNREAARECRRKKKEYVKCL 317 (348)
T KOG3584|consen 297 MKNREAARECRRKKKEYVKCL 317 (348)
T ss_pred HhhHHHHHHHHHhHhHHHHHH
Confidence 345555667777777777774
No 34
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=22.49 E-value=36 Score=28.85 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=13.9
Q ss_pred CccCC------CCCCCCCCCCcc
Q 034779 13 ARPVP------PEKGVFPLDHMH 29 (84)
Q Consensus 13 ~~ptp------PerGSFPLDH~g 29 (84)
++||+ =|+++||-||+.
T Consensus 149 yKPTekR~KILlE~kaFPSDhYA 171 (465)
T KOG3846|consen 149 YKPTEKRFKILLEKKAFPSDHYA 171 (465)
T ss_pred cCCcchhhhhhhccCCCCchHHH
Confidence 57776 689999999974
No 35
>KOG3484 consensus Cyclin-dependent protein kinase CDC28, regulatory subunit CKS1, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=22.45 E-value=25 Score=24.08 Aligned_cols=16 Identities=6% Similarity=-0.178 Sum_probs=13.5
Q ss_pred ccCCCCcccccccccc
Q 034779 65 AKNAQSMHSLVHWERD 80 (84)
Q Consensus 65 d~~LM~kdd~~nlg~~ 80 (84)
.+-||+.++|.+||..
T Consensus 34 k~rllsE~EWR~lGvq 49 (91)
T KOG3484|consen 34 KNRLLSETEWRGLGVQ 49 (91)
T ss_pred ccccccHHHHhhhCcc
Confidence 3479999999999964
No 36
>KOG3496 consensus Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 [Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=86 Score=20.73 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=16.5
Q ss_pred ccchHHHHHHHHHHHHcCCC
Q 034779 29 HQCDLEKKDYIGCLKSSGHQ 48 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~ 48 (84)
-.|+..+..|-.|||..|.+
T Consensus 52 e~C~~lIEahk~CMr~~GF~ 71 (72)
T KOG3496|consen 52 EKCGKLIEAHKECMRAYGFE 71 (72)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 46999999999999987654
No 37
>KOG3468 consensus NADH:ubiquinone oxidoreductase, NDUFB7/B18 subunit [Energy production and conversion]
Probab=21.28 E-value=47 Score=23.98 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=33.2
Q ss_pred CCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccccCC
Q 034779 24 PLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNA 68 (84)
Q Consensus 24 PLDH~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~L 68 (84)
+|----.|-+..+.|++|-..+--..-+|-..--.|..|-.+--.
T Consensus 50 ~l~~RDyCAH~lI~l~kCr~~~fp~~~kC~~erh~~dkCEyed~v 94 (128)
T KOG3468|consen 50 ALGSRDYCAHLLIPLNKCRQDEFPFPWKCEDERHVYDKCEYEDYV 94 (128)
T ss_pred CcchHHHHHHHHHHHHHhhcccCCcchhccccccchhhhhHHHHH
Confidence 344445677888888888888877778888888888888654433
Done!