Query 034779
Match_columns 84
No_of_seqs 106 out of 151
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ei0_A P8MTCP1; helix-turn-hel 95.8 0.012 4.2E-07 33.0 3.7 34 30-63 2-35 (38)
2 2lql_A Coiled-coil-helix-coile 95.7 0.0043 1.5E-07 41.7 1.9 39 29-67 59-97 (113)
3 1hp8_A HU-P8; leukemia, cystei 95.2 0.019 6.4E-07 36.3 3.4 36 29-64 5-40 (68)
4 2lqt_A Coiled-coil-helix-coile 89.4 0.38 1.3E-05 31.5 3.6 35 29-63 14-48 (85)
5 2lql_A Coiled-coil-helix-coile 82.3 0.47 1.6E-05 31.7 1.2 44 25-68 8-53 (113)
6 1u96_A Cytochrome C oxidase co 72.3 5.5 0.00019 25.1 4.0 36 27-62 22-57 (69)
7 1v54_H AED, cytochrome C oxida 66.0 11 0.00036 24.0 4.4 46 16-61 13-62 (85)
8 1u96_A Cytochrome C oxidase co 65.8 4.7 0.00016 25.5 2.7 21 29-49 45-65 (69)
9 1pp9_H Ubiquinol-cytochrome C 29.1 45 0.0016 20.8 2.8 35 29-63 28-65 (78)
10 1ejp_A Syndecan-4; symmetric-p 28.5 21 0.00073 19.0 1.0 11 18-28 5-15 (28)
11 1cks_A Cyclin-dependent kinase 27.5 10 0.00036 24.3 -0.4 15 66-80 35-49 (79)
12 2l0y_B HCG2020266, COX17 cytoc 25.5 15 0.0005 23.1 -0.0 20 28-47 46-65 (67)
13 2dae_A KIAA0733 protein; mitog 24.0 51 0.0017 21.0 2.3 23 38-60 29-55 (75)
14 1r5s_A GAP junction alpha-1 pr 22.5 32 0.0011 23.9 1.3 19 61-79 47-65 (132)
15 3tgu_H Mitochondrial ubiquinol 20.8 76 0.0026 19.7 2.6 35 29-63 27-64 (77)
16 1qb3_A Cyclin-dependent kinase 20.4 19 0.00065 25.6 -0.3 14 67-80 67-80 (150)
17 1puc_A P13SUC1, P13; cell cycl 20.4 20 0.00069 24.1 -0.1 14 67-80 63-76 (105)
No 1
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=95.76 E-value=0.012 Score=33.01 Aligned_cols=34 Identities=15% Similarity=0.491 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 034779 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (84)
Q Consensus 30 eCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (84)
-|+.+...+..||.+|+++.++|..+...|=+|-
T Consensus 2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999988874
No 2
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=95.70 E-value=0.0043 Score=41.72 Aligned_cols=39 Identities=18% Similarity=0.508 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccccC
Q 034779 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKN 67 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~ 67 (84)
..|...+..|-.||+.|+.+-.+||..-+.+.+|-=+..
T Consensus 59 ~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v~ 97 (113)
T 2lql_A 59 QACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQ 97 (113)
T ss_dssp HHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC-
T ss_pred HHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999974433
No 3
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=95.17 E-value=0.019 Score=36.27 Aligned_cols=36 Identities=14% Similarity=0.429 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhccc
Q 034779 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRM 64 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRM 64 (84)
.-|+.+...+..||..|+++-++|..+-..|=+|+-
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~ 40 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCA 40 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999985
No 4
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=89.37 E-value=0.38 Score=31.50 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 034779 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (84)
.-|.++-..-++||..|+.+-+.|..+=.+|=+|+
T Consensus 14 nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CK 48 (85)
T 2lqt_A 14 NPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 48 (85)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999995
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=82.26 E-value=0.47 Score=31.66 Aligned_cols=44 Identities=16% Similarity=0.389 Sum_probs=30.9
Q ss_pred CCCcc-cchHHHHHHHHHHHHcC-CCChhHHHHHHHHhhcccccCC
Q 034779 25 LDHMH-QCDLEKKDYIGCLKSSG-HQSENCRIFSKKYLECRMAKNA 68 (84)
Q Consensus 25 LDH~g-eCk~~m~~Yl~CLk~~~-~~~~~CR~laK~YL~CRMd~~L 68 (84)
++|-+ .|......|+.|..++. .+...|..+.++==.|-.++.+
T Consensus 8 ~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~ 53 (113)
T 2lql_A 8 LEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPI 53 (113)
T ss_dssp ------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCC
T ss_pred HHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHH
Confidence 45666 59999999999999884 4567898888888777655433
No 6
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=72.26 E-value=5.5 Score=25.12 Aligned_cols=36 Identities=36% Similarity=0.708 Sum_probs=30.2
Q ss_pred CcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 034779 27 HMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (84)
Q Consensus 27 H~geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~C 62 (84)
-==.|......==.|+-.++.++.+|..|...|.+|
T Consensus 22 pCCaCpetK~aRDeCil~~gee~~~C~~lIeahk~C 57 (69)
T 1u96_A 22 PCCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKEC 57 (69)
T ss_dssp CCTTSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHH
T ss_pred cCeeCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 345688888888889999988888999999999888
No 7
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=66.02 E-value=11 Score=24.04 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=35.5
Q ss_pred CCCCCCCCC-CCCcccchHHHHHHHHHHHH---cCCCChhHHHHHHHHhh
Q 034779 16 VPPEKGVFP-LDHMHQCDLEKKDYIGCLKS---SGHQSENCRIFSKKYLE 61 (84)
Q Consensus 16 tpPerGSFP-LDH~geCk~~m~~Yl~CLk~---~~~~~~~CR~laK~YL~ 61 (84)
|+|--=.|| -.---.|=..-.+|..|++. +|.+.+.|..+.+.|-+
T Consensus 13 tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~s 62 (85)
T 1v54_H 13 TAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 62 (85)
T ss_dssp SCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 344444577 44456788889999999665 89999999999999853
No 8
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=65.82 E-value=4.7 Score=25.46 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHHHHHcCCCC
Q 034779 29 HQCDLEKKDYIGCLKSSGHQS 49 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~ 49 (84)
.+|+..+..|-.||+..|.+-
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T 1u96_A 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp GGGHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999987653
No 9
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=29.10 E-value=45 Score=20.83 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=28.6
Q ss_pred ccchHHHHHHHHHHHHcCC---CChhHHHHHHHHhhcc
Q 034779 29 HQCDLEKKDYIGCLKSSGH---QSENCRIFSKKYLECR 63 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~---~~~~CR~laK~YL~CR 63 (84)
..|...+..|-.|..+... ....|-..--+|+.|+
T Consensus 28 ~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCv 65 (78)
T 1pp9_H 28 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4688999999999998733 3468999999999885
No 10
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=28.50 E-value=21 Score=18.99 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=8.9
Q ss_pred CCCCCCCCCCc
Q 034779 18 PEKGVFPLDHM 28 (84)
Q Consensus 18 PerGSFPLDH~ 28 (84)
-|-|||.||.-
T Consensus 5 KDEGSY~Lde~ 15 (28)
T 1ejp_A 5 KDEGSYDLGKK 15 (28)
T ss_dssp CCCCCCCCCSC
T ss_pred ccccccccCCC
Confidence 47899999963
No 11
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=27.52 E-value=10 Score=24.30 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=13.1
Q ss_pred cCCCCcccccccccc
Q 034779 66 KNAQSMHSLVHWERD 80 (84)
Q Consensus 66 ~~LM~kdd~~nlg~~ 80 (84)
..||+.++|.+||..
T Consensus 35 ~~LlsE~EWR~LGIq 49 (79)
T 1cks_A 35 THLMSEEEWRRLGVQ 49 (79)
T ss_dssp SSCCCHHHHHHHTCC
T ss_pred ccccCHHHHHHhCcc
Confidence 469999999999975
No 12
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=25.47 E-value=15 Score=23.07 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=16.5
Q ss_pred cccchHHHHHHHHHHHHcCC
Q 034779 28 MHQCDLEKKDYIGCLKSSGH 47 (84)
Q Consensus 28 ~geCk~~m~~Yl~CLk~~~~ 47 (84)
..+|+..+..|-.||+..|.
T Consensus 46 ee~C~~lIeahk~Cmr~~GF 65 (67)
T 2l0y_B 46 EEHCGHLIEAHKESMRALGF 65 (67)
T ss_dssp -CCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 34899999999999998653
No 13
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.96 E-value=51 Score=21.02 Aligned_cols=23 Identities=22% Similarity=0.670 Sum_probs=16.0
Q ss_pred HHHHHHHcCCCChhH-HHHHH---HHh
Q 034779 38 YIGCLKSSGHQSENC-RIFSK---KYL 60 (84)
Q Consensus 38 Yl~CLk~~~~~~~~C-R~laK---~YL 60 (84)
--.|+..|++|-..| +.|+| .||
T Consensus 29 Vsqc~~qN~~Nl~aC~~~L~qES~kYL 55 (75)
T 2dae_A 29 VSRCMLQNNNNLDACCAVLSQESTRYL 55 (75)
T ss_dssp HHHHHTTTTSCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCHHHHHHHHHHhcccce
Confidence 357999998877765 55555 465
No 14
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=22.46 E-value=32 Score=23.90 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.5
Q ss_pred hcccccCCCCccccccccc
Q 034779 61 ECRMAKNAQSMHSLVHWER 79 (84)
Q Consensus 61 ~CRMd~~LM~kdd~~nlg~ 79 (84)
-|+.-+.|++.++|.||.-
T Consensus 47 p~~~~N~laSEQNWAN~at 65 (132)
T 1r5s_A 47 SCRNYNKQASEQNWANYSA 65 (132)
T ss_dssp SSSSCCCCSCSCSSCCTTC
T ss_pred cccccccchhhhhhhhhhh
Confidence 3567789999999999853
No 15
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Probab=20.77 E-value=76 Score=19.74 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.3
Q ss_pred ccchHHHHHHHHHHHHcCC---CChhHHHHHHHHhhcc
Q 034779 29 HQCDLEKKDYIGCLKSSGH---QSENCRIFSKKYLECR 63 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~---~~~~CR~laK~YL~CR 63 (84)
..|......|-.|..+... ....|-..--+|+.|+
T Consensus 27 ~~C~~~~~~y~~C~eRV~~~~~~~e~C~eE~Fd~~hCv 64 (77)
T 3tgu_H 27 EKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHAR 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3588899999999998733 4568998888888884
No 16
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=20.42 E-value=19 Score=25.63 Aligned_cols=14 Identities=0% Similarity=-0.235 Sum_probs=12.6
Q ss_pred CCCCcccccccccc
Q 034779 67 NAQSMHSLVHWERD 80 (84)
Q Consensus 67 ~LM~kdd~~nlg~~ 80 (84)
.||+.++|.+||..
T Consensus 67 rLLtE~EWR~LGIq 80 (150)
T 1qb3_A 67 RILTEDEWRGLGIT 80 (150)
T ss_dssp CCCCHHHHHHTTCC
T ss_pred cCCCHHHHHHHccc
Confidence 59999999999975
No 17
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
Probab=20.39 E-value=20 Score=24.09 Aligned_cols=14 Identities=0% Similarity=-0.265 Sum_probs=12.5
Q ss_pred CCCCcccccccccc
Q 034779 67 NAQSMHSLVHWERD 80 (84)
Q Consensus 67 ~LM~kdd~~nlg~~ 80 (84)
.||+.++|.+||..
T Consensus 63 rLLtE~EWR~LGIq 76 (105)
T 1puc_A 63 RILQEEEWRGLGIT 76 (105)
T ss_dssp CCCCHHHHHHTTCC
T ss_pred cccCHHHHHHhCcc
Confidence 49999999999975
Done!