Query 034779
Match_columns 84
No_of_seqs 106 out of 151
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 10:11:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034779.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034779hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 77.7 1.3 9.7E-05 26.4 3.7 32 31-62 7-38 (68)
2 d1u97a_ a.17.1.2 (A:) Cytochro 77.2 1.3 9.3E-05 26.6 3.5 34 29-62 24-57 (69)
3 d1u97a_ a.17.1.2 (A:) Cytochro 49.3 5.8 0.00042 23.5 2.5 21 29-49 45-65 (69)
4 d1ppjh_ f.28.1.1 (H:) Non-heme 35.8 13 0.00096 21.3 2.6 35 29-63 16-53 (66)
5 d1cksa_ d.97.1.1 (A:) CksHs2 { 29.5 4.6 0.00034 24.2 -0.3 17 65-81 33-49 (74)
6 d1v54h_ a.51.1.1 (H:) Cytochro 28.9 47 0.0034 19.7 4.4 45 16-60 7-55 (79)
7 d2e9xd1 a.278.1.4 (D:21-165) G 26.3 9.5 0.00069 24.6 0.8 17 50-66 63-79 (145)
8 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 19.4 10 0.00075 24.2 -0.1 16 66-81 61-76 (113)
9 d2c9wc1 d.42.1.1 (C:17-112) El 18.3 21 0.0016 20.6 1.2 9 54-62 88-96 (96)
10 d1puca_ d.97.1.1 (A:) suc1 {Fi 17.0 11 0.00083 23.5 -0.3 15 67-81 63-77 (101)
No 1
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.72 E-value=1.3 Score=26.43 Aligned_cols=32 Identities=16% Similarity=0.510 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 034779 31 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (84)
Q Consensus 31 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~C 62 (84)
|+...=..-.||+.|+.+.++|...-.+--+|
T Consensus 7 Ck~~AC~IQ~CLq~N~Y~EskC~~~i~~L~~C 38 (68)
T d2hp8a_ 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKC 38 (68)
T ss_dssp THHHHHHHHHHHHHTTTCTTTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 88888899999999999999999988876666
No 2
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=77.23 E-value=1.3 Score=26.61 Aligned_cols=34 Identities=38% Similarity=0.769 Sum_probs=29.5
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 034779 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~C 62 (84)
=.|+.....==.|+-.++.++.+|..+...|.+|
T Consensus 24 CaCpetK~aRDeCil~~ge~~~~C~~lIeahk~C 57 (69)
T d1u97a_ 24 CVCKPEKEERDTCILFNGQDSEKCKEFIEKYKEC 57 (69)
T ss_dssp SCCHHHHHHHHHHHHHTCTTSTTSHHHHHHHHHH
T ss_pred ccCchhhhHhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 4688888888899999988888999999999988
No 3
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.33 E-value=5.8 Score=23.54 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHHHHcCCCC
Q 034779 29 HQCDLEKKDYIGCLKSSGHQS 49 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~ 49 (84)
.+|+..+..|-.||+..|.+-
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T d1u97a_ 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp TTSHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 459999999999999987653
No 4
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=35.82 E-value=13 Score=21.25 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=28.5
Q ss_pred ccchHHHHHHHHHHHHc---CCCChhHHHHHHHHhhcc
Q 034779 29 HQCDLEKKDYIGCLKSS---GHQSENCRIFSKKYLECR 63 (84)
Q Consensus 29 geCk~~m~~Yl~CLk~~---~~~~~~CR~laK~YL~CR 63 (84)
..|......|-.|..+. +...+.|...-=+|+.|+
T Consensus 16 ~~C~~~~~~~~eC~eRV~~~~~~~E~C~eE~fd~~hc~ 53 (66)
T d1ppjh_ 16 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 36889999999999986 334557999999999885
No 5
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.47 E-value=4.6 Score=24.22 Aligned_cols=17 Identities=6% Similarity=-0.085 Sum_probs=14.1
Q ss_pred ccCCCCccccccccccC
Q 034779 65 AKNAQSMHSLVHWERDN 81 (84)
Q Consensus 65 d~~LM~kdd~~nlg~~~ 81 (84)
...||+.++|.+||..-
T Consensus 33 k~~LlsE~EWR~LGIqq 49 (74)
T d1cksa_ 33 KTHLMSEEEWRRLGVQQ 49 (74)
T ss_dssp SSSCCCHHHHHHHTCCC
T ss_pred CccccCHHHHHHhCccc
Confidence 45699999999999753
No 6
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.92 E-value=47 Score=19.65 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=34.6
Q ss_pred CCCCCCCCC-CCCcccchHHHHHHHHHHH---HcCCCChhHHHHHHHHh
Q 034779 16 VPPEKGVFP-LDHMHQCDLEKKDYIGCLK---SSGHQSENCRIFSKKYL 60 (84)
Q Consensus 16 tpPerGSFP-LDH~geCk~~m~~Yl~CLk---~~~~~~~~CR~laK~YL 60 (84)
|+|----|| -.--.-|-.--.+|-.|.| ..|.+.+.|..+.+-|-
T Consensus 7 TaP~D~RFPn~NQTrhC~~~Y~dyhrC~K~~~~kGed~~~C~~f~~~y~ 55 (79)
T d1v54h_ 7 TAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYK 55 (79)
T ss_dssp SCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHH
T ss_pred CCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 344444577 5556678888889999966 45999999999999884
No 7
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.32 E-value=9.5 Score=24.60 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=14.4
Q ss_pred hhHHHHHHHHhhccccc
Q 034779 50 ENCRIFSKKYLECRMAK 66 (84)
Q Consensus 50 ~~CR~laK~YL~CRMd~ 66 (84)
...|=+-++||.||+.+
T Consensus 63 eRikfllrsYLR~RL~K 79 (145)
T d2e9xd1 63 ERIRYVLSSYLRCRLMK 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788889999999875
No 8
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.35 E-value=10 Score=24.19 Aligned_cols=16 Identities=0% Similarity=-0.234 Sum_probs=13.4
Q ss_pred cCCCCccccccccccC
Q 034779 66 KNAQSMHSLVHWERDN 81 (84)
Q Consensus 66 ~~LM~kdd~~nlg~~~ 81 (84)
..||+.++|.+||..-
T Consensus 61 ~rLLtE~EWR~LGIqq 76 (113)
T d1qb3a_ 61 LRILTEDEWRGLGITQ 76 (113)
T ss_dssp BCCCCHHHHHHTTCCC
T ss_pred cccCCHHHHHHhCccc
Confidence 3599999999999753
No 9
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.28 E-value=21 Score=20.57 Aligned_cols=9 Identities=22% Similarity=1.080 Sum_probs=6.7
Q ss_pred HHHHHHhhc
Q 034779 54 IFSKKYLEC 62 (84)
Q Consensus 54 ~laK~YL~C 62 (84)
.+|-+||+|
T Consensus 88 i~AAnyLd~ 96 (96)
T d2c9wc1 88 LMAANFLDC 96 (96)
T ss_dssp HHHHHHHTC
T ss_pred HHHHhhhcC
Confidence 467788887
No 10
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=16.95 E-value=11 Score=23.53 Aligned_cols=15 Identities=0% Similarity=-0.232 Sum_probs=12.9
Q ss_pred CCCCccccccccccC
Q 034779 67 NAQSMHSLVHWERDN 81 (84)
Q Consensus 67 ~LM~kdd~~nlg~~~ 81 (84)
.||+.++|.+||..-
T Consensus 63 rLLtE~EWR~LGIqq 77 (101)
T d1puca_ 63 RILQEEEWRGLGITQ 77 (101)
T ss_dssp CCCCHHHHHHTTCCC
T ss_pred ccCCHHHHHHhcccc
Confidence 499999999999753
Done!