BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034780
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXR|B Chain B, Crystal Structure Of The Yeast Inter-Membrane Space
Chaperone Assembly Tim9.10
Length = 95
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 9 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQV 68
+ +Q AE E++ ++FN+L C+ KC++ Y E ELN E+SC+DRCV+KY++
Sbjct: 15 LSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFET 74
Query: 69 NSMIGQLLSAGGRP 82
N +G+ + G+
Sbjct: 75 NVQVGENMQKMGQS 88
>pdb|2BSK|B Chain B, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|D Chain D, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|F Chain F, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
Length = 90
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
AE E+E + +NR C KCV YKE+EL+ GE+ C+DRCVSKY ++ G+ L+
Sbjct: 11 AELEVEXXADXYNRXTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERXGKKLT 70
>pdb|2BSK|A Chain A, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|C Chain C, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|E Chain E, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
Length = 89
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 29 FNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIG 73
+N+L +TCF CV K + E+ E +C + C+ KY ++ I
Sbjct: 21 YNKLTETCFLDCV-KDFTTREVKPEETTCSEHCLQKYLKMTQRIS 64
>pdb|3CJH|A Chain A, Tim8-Tim13 Complex
pdb|3CJH|C Chain C, Tim8-Tim13 Complex
pdb|3CJH|E Chain E, Tim8-Tim13 Complex
pdb|3CJH|G Chain G, Tim8-Tim13 Complex
pdb|3CJH|I Chain I, Tim8-Tim13 Complex
pdb|3CJH|K Chain K, Tim8-Tim13 Complex
Length = 64
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 26 VELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKY---WQVNS 70
EL N++++ CF KC+ Y ++CID+C++KY W V S
Sbjct: 6 TELVNKISENCFEKCLTSPYA-----TRNDACIDQCLAKYMRSWNVIS 48
>pdb|3DXR|A Chain A, Crystal Structure Of The Yeast Inter-Membrane Space
Chaperone Assembly Tim9.10
Length = 89
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQ 74
+ + +M+ + L++ L + CF CV+ + S+L E +CI +C K+ + + +GQ
Sbjct: 18 VEQKQMKDFMRLYSNLVERCFTDCVND-FTTSKLTNKEQTCIMKCSEKFLKHSERVGQ 74
>pdb|3CJH|B Chain B, Tim8-Tim13 Complex
pdb|3CJH|D Chain D, Tim8-Tim13 Complex
pdb|3CJH|F Chain F, Tim8-Tim13 Complex
pdb|3CJH|H Chain H, Tim8-Tim13 Complex
pdb|3CJH|J Chain J, Tim8-Tim13 Complex
pdb|3CJH|L Chain L, Tim8-Tim13 Complex
Length = 64
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 29 FNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMI 72
++ CF KCV+ +S L+ E C+ CV+++ N I
Sbjct: 14 IHQFTNICFKKCVES-VNDSNLSSQEEQCLSNCVNRFLDTNIRI 56
>pdb|3KF8|A Chain A, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
pdb|3KF8|C Chain C, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
Length = 220
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 36 CFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
F K V ++YKE E N E S + +S + ++S I LS
Sbjct: 90 IFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLS 131
>pdb|3ALQ|R Chain R, Crystal Structure Of Tnf-Tnfr2 Complex
pdb|3ALQ|S Chain S, Crystal Structure Of Tnf-Tnfr2 Complex
pdb|3ALQ|T Chain T, Crystal Structure Of Tnf-Tnfr2 Complex
pdb|3ALQ|U Chain U, Crystal Structure Of Tnf-Tnfr2 Complex
pdb|3ALQ|V Chain V, Crystal Structure Of Tnf-Tnfr2 Complex
pdb|3ALQ|W Chain W, Crystal Structure Of Tnf-Tnfr2 Complex
Length = 173
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 27 ELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCV-SKYWQVNSMIGQLLSAGGR 81
E +++ AQ C +KC ++ + ++ D C S Y Q+ + + + LS G R
Sbjct: 12 EYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSR 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,381,181
Number of Sequences: 62578
Number of extensions: 71503
Number of successful extensions: 128
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 9
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)