Query 034780
Match_columns 84
No_of_seqs 114 out of 696
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3489 Mitochondrial import i 99.9 3.9E-27 8.4E-32 147.2 9.7 72 7-80 8-80 (86)
2 PF02953 zf-Tim10_DDP: Tim10/D 99.9 9.8E-26 2.1E-30 134.4 8.1 66 13-79 1-66 (66)
3 KOG3480 Mitochondrial import i 99.9 7.9E-25 1.7E-29 137.4 10.4 82 1-83 1-82 (90)
4 KOG1733 Mitochondrial import i 99.9 9.5E-22 2.1E-26 124.7 9.5 70 7-78 14-86 (97)
5 KOG3479 Mitochondrial import i 99.8 4.1E-21 9E-26 119.6 6.2 64 17-81 3-66 (83)
6 PF05811 DUF842: Eukaryotic pr 94.3 1 2.2E-05 30.0 9.2 65 13-78 61-129 (131)
7 KOG3377 Uncharacterized conser 93.3 0.73 1.6E-05 31.6 7.3 61 17-77 73-136 (143)
8 KOG3377 Uncharacterized conser 64.8 41 0.00088 23.1 6.2 41 35-78 40-80 (143)
9 PF08095 Toxin_25: Hefutoxin f 55.8 1.9 4.2E-05 20.5 -1.0 19 36-61 4-22 (22)
10 PF05811 DUF842: Eukaryotic pr 52.0 58 0.0013 21.5 5.2 44 32-78 29-72 (131)
11 PF05892 Tricho_coat: Trichovi 44.0 65 0.0014 23.1 4.7 60 13-72 114-178 (194)
12 KOG3196 NADH:ubiquinone oxidor 38.8 22 0.00048 25.9 1.7 33 31-63 131-166 (233)
13 KOG0869 CCAAT-binding factor, 38.2 39 0.00086 23.7 2.8 23 46-68 48-70 (168)
14 PF09889 DUF2116: Uncharacteri 32.9 84 0.0018 18.3 3.3 27 47-73 10-36 (59)
15 cd03565 VHS_Tom1 VHS domain fa 31.7 64 0.0014 21.4 3.0 12 31-42 61-72 (141)
16 COG5054 ERV1 Mitochondrial sul 30.8 2E+02 0.0043 20.5 5.6 50 21-78 108-163 (181)
17 smart00856 PMEI Plant invertas 29.3 1.4E+02 0.0031 18.8 4.3 29 50-78 65-93 (148)
18 PF06644 ATP11: ATP11 protein; 27.1 1.3E+02 0.0028 22.4 4.2 33 47-79 212-253 (266)
19 TIGR01614 PME_inhib pectineste 25.0 1.5E+02 0.0033 19.4 4.0 27 51-77 91-117 (178)
20 PF03617 IBV_3A: IBV 3A protei 23.4 83 0.0018 18.1 2.0 15 28-42 15-29 (57)
21 PF04043 PMEI: Plant invertase 21.7 2.1E+02 0.0046 17.9 4.0 29 49-77 66-94 (152)
22 PHA03019 hypothetical protein; 20.1 84 0.0018 19.1 1.7 30 38-69 24-55 (77)
No 1
>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.9e-27 Score=147.16 Aligned_cols=72 Identities=28% Similarity=0.522 Sum_probs=68.1
Q ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 034780 7 MGVDKE-QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGG 80 (84)
Q Consensus 7 ~~~~~~-q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~ 80 (84)
.+.++| ++|+++|+|.+.|++++|++|+.||+|||.+ ++++||++|++|+.|||+||||++.+|.+||+...
T Consensus 8 ~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~--~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~ 80 (86)
T KOG3489|consen 8 DANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEK--PGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMN 80 (86)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888 9999999999999999999999999999997 67999999999999999999999999999998754
No 2
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=99.93 E-value=9.8e-26 Score=134.36 Aligned_cols=66 Identities=41% Similarity=0.713 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcC
Q 034780 13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAG 79 (84)
Q Consensus 13 q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~ 79 (84)
|+++++++|++.|+.++++|++.||+|||++ |++++|+++|++||+||++||++++.+|+++|+++
T Consensus 1 q~~~~~~~q~~~~~~~~~~~t~~Cf~kCv~~-~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~ 66 (66)
T PF02953_consen 1 QQQLMQEQQMKDFQELFNKLTERCFDKCVTK-FPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM 66 (66)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-T-TSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999997 89999999999999999999999999999999864
No 3
>KOG3480 consensus Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.9e-25 Score=137.40 Aligned_cols=82 Identities=50% Similarity=0.850 Sum_probs=77.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 034780 1 MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGG 80 (84)
Q Consensus 1 m~~~~~~~~~~~q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~ 80 (84)
||.+.|.++++++.. ++++++..+.++||+|+..|++|||+..|..++|+++|.+||||||.||+++|..|+++|++.+
T Consensus 1 ~~~~~~q~~~~~k~q-~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~ 79 (90)
T KOG3480|consen 1 MALPQPQTVDQQKAQ-MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMG 79 (90)
T ss_pred CCCCcccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677889999999776 9999999999999999999999999988999999999999999999999999999999999988
Q ss_pred CCC
Q 034780 81 RPP 83 (84)
Q Consensus 81 ~~~ 83 (84)
+.+
T Consensus 80 ~~~ 82 (90)
T KOG3480|consen 80 QGD 82 (90)
T ss_pred CCc
Confidence 764
No 4
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.5e-22 Score=124.68 Aligned_cols=70 Identities=24% Similarity=0.591 Sum_probs=60.9
Q ss_pred CCCCHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780 7 MGVDKE-QAFGMAETEM--EYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSA 78 (84)
Q Consensus 7 ~~~~~~-q~~~~~~~q~--~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~ 78 (84)
.+.+++ ..+...++|+ +.+++|+++|+++||+|||++ ||++|+++|++||++|++||||+|+.|++.+..
T Consensus 14 s~~~~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~--PGssl~~~e~~Cis~CmdRyMdawniVSrty~s 86 (97)
T KOG1733|consen 14 SSKTTEGELMNQVKQQLAVANAQELVSKISEKCFDKCITK--PGSSLDSSEKSCISRCMDRYMDAWNIVSRTYIS 86 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 6677777776 778999999999999999998 999999999999999999999999999887754
No 5
>KOG3479 consensus Mitochondrial import inner membrane translocase, subunit TIM9 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.1e-21 Score=119.57 Aligned_cols=64 Identities=25% Similarity=0.591 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 034780 17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 81 (84)
Q Consensus 17 ~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~ 81 (84)
....++++|..+||+||++||..||++ |+.++|++.|++|+.+|++||+..+++|++||++..+
T Consensus 3 ~~~k~lkDFl~~YN~ltE~CF~dCV~d-ft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~ 66 (83)
T KOG3479|consen 3 QQIKQLKDFLTLYNKLTELCFSDCVDD-FTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQA 66 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999996 9999999999999999999999999999999998543
No 6
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=94.25 E-value=1 Score=29.96 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----CCCchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780 13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKES----ELNMGENSCIDRCVSKYWQVNSMIGQLLSA 78 (84)
Q Consensus 13 q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~----~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~ 78 (84)
+.-...+.++..|+.-+++-+..|.++=-+. ++.+ .....=+.|+..||++|+..---|.+++.+
T Consensus 61 ~aq~~vq~El~~FQ~rlqrC~~~C~dk~~d~-~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~ 129 (131)
T PF05811_consen 61 QAQNYVQNELEQFQNRLQRCVMHCQDKAKDK-MDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3445566788999999888888888876654 2111 112223789999999999999988888764
No 7
>KOG3377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.73 Score=31.56 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCchHhHHHHHHHHHHHHHHHHHHHHHH
Q 034780 17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKE---SELNMGENSCIDRCVSKYWQVNSMIGQLLS 77 (84)
Q Consensus 17 ~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~---~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~ 77 (84)
..+.++..|++-+++-+-.|-+|=-.+.-++ .+.-...++|+.+||+.++..---+.+++-
T Consensus 73 ~~~~El~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK 136 (143)
T KOG3377|consen 73 YVQSELGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMK 136 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3456788899888887777777653221111 234555789999999999998887777764
No 8
>KOG3377 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.85 E-value=41 Score=23.11 Aligned_cols=41 Identities=22% Similarity=0.511 Sum_probs=28.0
Q ss_pred HHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780 35 TCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSA 78 (84)
Q Consensus 35 ~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~ 78 (84)
+|-..|..+ ..+. -..-+-||+.|+....++.+++-+-|.+
T Consensus 40 rCaa~Ccdd--~r~~-~e~v~~ci~~c~~pl~~aQ~~~~~El~~ 80 (143)
T KOG3377|consen 40 RCAAECCDD--SRAS-EEAVNCCIECCVPPLTKAQQYVQSELGK 80 (143)
T ss_pred HHHHHHHcc--cccc-HHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 566666655 2232 2334789999999999998888665544
No 9
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=55.80 E-value=1.9 Score=20.47 Aligned_cols=19 Identities=32% Similarity=1.043 Sum_probs=11.0
Q ss_pred HHHHhhcCCCCCCCCCchHhHHHHHH
Q 034780 36 CFNKCVDKRYKESELNMGENSCIDRC 61 (84)
Q Consensus 36 Cf~kCV~~~~~~~~L~~~E~~Ci~~C 61 (84)
||..|... ...|++|-.+|
T Consensus 4 cyrscwk~-------g~deetck~~c 22 (22)
T PF08095_consen 4 CYRSCWKA-------GHDEETCKERC 22 (22)
T ss_dssp TTTHHHHH-------HS-TTHHHHH-
T ss_pred hHHHHHHc-------cCcHHHHHhcC
Confidence 66667653 22477887776
No 10
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=51.97 E-value=58 Score=21.45 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780 32 LAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSA 78 (84)
Q Consensus 32 lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~ 78 (84)
-.-.|-.+|.++ ++.+ -..=+.||.+|-.--..+...|.+-|.+
T Consensus 29 ~~f~C~a~Ccdd--~~~s-~e~V~~Cve~C~~pl~~aq~~vq~El~~ 72 (131)
T PF05811_consen 29 KMFKCAAKCCDD--SSAS-MEQVQRCVERCQQPLQQAQNYVQNELEQ 72 (131)
T ss_pred HHHHHHHHHhhC--CCCC-HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 344677788854 3333 2234789999999988888888666554
No 11
>PF05892 Tricho_coat: Trichovirus coat protein; InterPro: IPR008879 This family consists of several coat proteins which are specific to the ssRNA positive-strand, no DNA stage viruses such as the Trichoviruses and Vitiviruses.; GO: 0019028 viral capsid
Probab=44.03 E-value=65 Score=23.12 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhc--CCCCCCCCCchHhHHHHHHHHHHHHHHHHH
Q 034780 13 QAFGMAETEMEYRVELFNRLAQTCFNK---CVD--KRYKESELNMGENSCIDRCVSKYWQVNSMI 72 (84)
Q Consensus 13 q~~~~~~~q~~~~~~l~~~lt~~Cf~k---CV~--~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v 72 (84)
..++.....+--+..||.++++.|++. |.+ +--+-..|++.|.++|.++-.|-+++-..-
T Consensus 114 ~~~L~~l~~~g~~TnL~~Kmp~~g~k~PqV~FDFn~GL~l~~L~~~e~~vIq~ln~RLfrtE~aK 178 (194)
T PF05892_consen 114 YNFLVKLASMGVYTNLYKKMPKLGGKEPQVMFDFNSGLDLSRLTKEEAKVIQNLNQRLFRTEGAK 178 (194)
T ss_pred HHHHHHHHhcchHhHHHHhhHhhcCCCCeEeeecccCcchhhcCHHHHHHHHHHHHHHHHHHHhh
Confidence 444555556677888999999998763 222 113446789999999999999998876543
No 12
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=38.84 E-value=22 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcC---CCCCCCCCchHhHHHHHHHH
Q 034780 31 RLAQTCFNKCVDK---RYKESELNMGENSCIDRCVS 63 (84)
Q Consensus 31 ~lt~~Cf~kCV~~---~~~~~~L~~~E~~Ci~~Cv~ 63 (84)
.+.+.|-++|-.+ -.++..++-.|..|+.+||+
T Consensus 131 ~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvn 166 (233)
T KOG3196|consen 131 DILEACKKQLGIKVGETTKDGLFTLEEVECLGACVN 166 (233)
T ss_pred HHHHHHHHHhCccccccccccceeeecchhhhhhcc
Confidence 6788899999751 03567789999999999996
No 13
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=38.25 E-value=39 Score=23.69 Aligned_cols=23 Identities=13% Similarity=0.465 Sum_probs=20.6
Q ss_pred CCCCCCchHhHHHHHHHHHHHHH
Q 034780 46 KESELNMGENSCIDRCVSKYWQV 68 (84)
Q Consensus 46 ~~~~L~~~E~~Ci~~Cv~k~~~~ 68 (84)
+..++++..+.|+.-||.-||-+
T Consensus 48 ~naKIsKDAKE~vQECVSEfISF 70 (168)
T KOG0869|consen 48 ANAKISKDAKETVQECVSEFISF 70 (168)
T ss_pred cccccchHHHHHHHHHHHHHHHH
Confidence 57889999999999999999864
No 14
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.91 E-value=84 Score=18.26 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=22.8
Q ss_pred CCCCCchHhHHHHHHHHHHHHHHHHHH
Q 034780 47 ESELNMGENSCIDRCVSKYWQVNSMIG 73 (84)
Q Consensus 47 ~~~L~~~E~~Ci~~Cv~k~~~~~~~v~ 73 (84)
|..+..+|.-|-+.|-+.|..-..+..
T Consensus 10 G~~Ip~~~~fCS~~C~~~~~k~qk~~~ 36 (59)
T PF09889_consen 10 GKPIPPDESFCSPKCREEYRKRQKRMR 36 (59)
T ss_pred CCcCCcchhhhCHHHHHHHHHHHHHHH
Confidence 566778899999999999998877755
No 15
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.68 E-value=64 Score=21.38 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=5.5
Q ss_pred HHHHHHHHHhhc
Q 034780 31 RLAQTCFNKCVD 42 (84)
Q Consensus 31 ~lt~~Cf~kCV~ 42 (84)
.|.+.|.+-|-.
T Consensus 61 ~LLe~~vkNCG~ 72 (141)
T cd03565 61 TVLETCVKNCGH 72 (141)
T ss_pred HHHHHHHHHccH
Confidence 344445444443
No 16
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=30.76 E-value=2e+02 Score=20.47 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHH------HHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780 21 EMEYRVELFNRLAQTCF------NKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSA 78 (84)
Q Consensus 21 q~~~~~~l~~~lt~~Cf------~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~ 78 (84)
.+..|.-+|..+- -|| .|=+.. ..+..++.|+.|.+-| ++++.|.++|.+
T Consensus 108 ~l~sFl~~~s~~y-PCgeCs~~f~K~l~~--~ppqv~SRea~~~W~C-----evHN~VNekL~K 163 (181)
T COG5054 108 DLRSFLFLFSITY-PCGECSKHFQKLLDV--YPPQVSSREAATTWAC-----EVHNKVNEKLGK 163 (181)
T ss_pred HHHHHHHHhhhee-ecHHHHHHHHHHHhh--CCCCcccHHHHHHHHH-----HHHHHHHHHhCC
Confidence 3445555554432 354 566665 3577899999999999 577888887754
No 17
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=29.28 E-value=1.4e+02 Score=18.76 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=23.6
Q ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780 50 LNMGENSCIDRCVSKYWQVNSMIGQLLSA 78 (84)
Q Consensus 50 L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~ 78 (84)
.+..+..++..|.+-|-++...+...+..
T Consensus 65 ~~~~~~~al~~C~~~y~~a~~~L~~a~~~ 93 (148)
T smart00856 65 KDPRLKAALKDCLELYDDAVDSLEKALEE 93 (148)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999998888765543
No 18
>PF06644 ATP11: ATP11 protein; InterPro: IPR010591 This family consists of several eukaryotic ATP11 proteins. The expression of functional F1-ATPase requires two proteins which are encoded by the ATP11 and ATP12 genes []. Atp11p is a molecular chaperone of the mitochondrial matrix that participates in the biogenesis pathway to form F1, which is the catalytic unit of ATP synthase. It binds to the free beta subunits of F1, which prevents the beta subunit from associating with itself in non-productive complex. It also allows for the formation of a (alpha beta)3 hexamer []. ; GO: 0006461 protein complex assembly, 0005739 mitochondrion; PDB: 2P4F_A.
Probab=27.07 E-value=1.3e+02 Score=22.41 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCCCCchHhHHHHHHHHHHH---------HHHHHHHHHHHcC
Q 034780 47 ESELNMGENSCIDRCVSKYW---------QVNSMIGQLLSAG 79 (84)
Q Consensus 47 ~~~L~~~E~~Ci~~Cv~k~~---------~~~~~v~~~l~~~ 79 (84)
+..|+..|..|+-+|+.||. +--..+++.|.+.
T Consensus 212 ~~~ls~~eAq~L~~~lQ~FY~~~~~~~~~~~~~~ll~~Fn~~ 253 (266)
T PF06644_consen 212 DSGLSKQEAQLLVNQLQRFYAAGEEGEDDKERYKLLETFNKG 253 (266)
T ss_dssp TSS--HHHHHHHHHHHHHHTGGG--SHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHcCC
Confidence 34499999999999999999 3335556666654
No 19
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=24.99 E-value=1.5e+02 Score=19.42 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=22.5
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHH
Q 034780 51 NMGENSCIDRCVSKYWQVNSMIGQLLS 77 (84)
Q Consensus 51 ~~~E~~Ci~~Cv~k~~~~~~~v~~~l~ 77 (84)
+..+..|++.|.+-|-++...+...+.
T Consensus 91 ~~~~~~al~~C~~~y~~a~~~L~~a~~ 117 (178)
T TIGR01614 91 DPRDKSALEDCVELYSDAVDALDKALA 117 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999888765543
No 20
>PF03617 IBV_3A: IBV 3A protein ; InterPro: IPR005214 The gene product of gene 3 from Infectious bronchitis virus (strain CL190). Currently, the function of this protein remains unknown.
Probab=23.44 E-value=83 Score=18.13 Aligned_cols=15 Identities=40% Similarity=0.968 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhc
Q 034780 28 LFNRLAQTCFNKCVD 42 (84)
Q Consensus 28 l~~~lt~~Cf~kCV~ 42 (84)
+.-++.=.||+.||-
T Consensus 15 lwcklvlscf~ecvi 29 (57)
T PF03617_consen 15 LWCKLVLSCFRECVI 29 (57)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777778888874
No 21
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=21.72 E-value=2.1e+02 Score=17.85 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=23.3
Q ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHHH
Q 034780 49 ELNMGENSCIDRCVSKYWQVNSMIGQLLS 77 (84)
Q Consensus 49 ~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~ 77 (84)
..+.....|+..|.+-|-++...+.+.+.
T Consensus 66 ~~~~~~~~~l~~C~~~y~~a~~~l~~a~~ 94 (152)
T PF04043_consen 66 SKDPNAKQALQDCQELYDDAVDSLQRALE 94 (152)
T ss_dssp S-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788899999999999998888776554
No 22
>PHA03019 hypothetical protein; Provisional
Probab=20.06 E-value=84 Score=19.08 Aligned_cols=30 Identities=20% Similarity=0.608 Sum_probs=19.0
Q ss_pred HHhhcCCCCCCCCCchH--hHHHHHHHHHHHHHH
Q 034780 38 NKCVDKRYKESELNMGE--NSCIDRCVSKYWQVN 69 (84)
Q Consensus 38 ~kCV~~~~~~~~L~~~E--~~Ci~~Cv~k~~~~~ 69 (84)
+.|+.. |.+. |...| .+=-++|+++|++.-
T Consensus 24 d~c~kn-~nd~-l~aee~lknlnd~~in~~ld~~ 55 (77)
T PHA03019 24 DECEKN-FNDA-LLAEENLKNLNDHCINKFLDFK 55 (77)
T ss_pred HHHHHH-HHHH-HHhHHHHhhhhHHHHHHHHHHH
Confidence 456664 4433 44444 456789999999864
Done!