Query 034780
Match_columns 84
No_of_seqs 114 out of 696
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dxr_B Mitochondrial import in 99.9 6E-28 2.1E-32 153.5 7.4 72 10-81 16-87 (95)
2 2bsk_B Mitochondrial import in 99.9 2.9E-28 9.9E-33 153.2 3.9 71 10-80 2-73 (90)
3 3cjh_B Mitochondrial import in 99.9 4.4E-27 1.5E-31 139.6 6.9 63 16-79 1-63 (64)
4 3dxr_A Mitochondrial import in 99.9 1.3E-26 4.6E-31 145.5 8.6 69 13-83 15-83 (89)
5 2bsk_A Mitochondrial import in 99.9 1.7E-25 5.9E-30 140.4 6.0 65 17-82 9-73 (89)
6 3cjh_A Mitochondrial import in 99.9 6.8E-23 2.3E-27 121.8 6.3 56 21-81 1-56 (64)
7 1ter_A Tertiapin; toxin; NMR { 60.5 2.8 9.7E-05 19.7 0.7 10 34-43 12-21 (26)
8 1x91_A Invertase/pectin methyl 32.1 66 0.0023 19.6 4.0 28 51-78 65-92 (153)
9 1xg2_B Pectinesterase inhibito 30.6 73 0.0025 19.3 4.0 28 51-78 65-92 (153)
10 1hp9_A Kappa-hefutoxin 1; scor 30.1 3.7 0.00013 19.4 -1.7 11 53-63 14-24 (26)
11 2p4f_A Similar to SP|P32453 sa 27.7 51 0.0018 24.0 3.2 34 47-80 239-282 (299)
12 2plx_B Peptide inhibitor; heli 24.4 28 0.00096 16.2 0.9 8 54-61 17-24 (26)
13 2dqa_A Lysozyme; enzyme, subst 22.4 74 0.0025 20.2 2.9 17 54-70 63-79 (124)
No 1
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6e-28 Score=153.46 Aligned_cols=72 Identities=38% Similarity=0.840 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 034780 10 DKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 81 (84)
Q Consensus 10 ~~~q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~ 81 (84)
..++.+.++|+|+++|+++||+||++||+|||+++|++++|+++|++||+|||+||||+|++|++||++.++
T Consensus 16 ~~~qk~~~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 16 SSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335777899999999999999999999999999668999999999999999999999999999999998664
No 2
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.94 E-value=2.9e-28 Score=153.18 Aligned_cols=71 Identities=39% Similarity=0.728 Sum_probs=58.2
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 034780 10 DKE-QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGG 80 (84)
Q Consensus 10 ~~~-q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~ 80 (84)
|++ +.++++++|+++|+.+||+|++.||+|||+++|++++|+++|++||+|||+||++++++|+++|++.+
T Consensus 2 ~~e~~~~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~ 73 (90)
T 2bsk_B 2 DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELS 73 (90)
T ss_dssp -----------CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 88999999999999999999999999999755899999999999999999999999999999998754
No 3
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-27 Score=139.59 Aligned_cols=63 Identities=24% Similarity=0.463 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcC
Q 034780 16 GMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAG 79 (84)
Q Consensus 16 ~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~ 79 (84)
+++|+|++.++++||+|++.||+|||++ ||+++|+++|++||+|||+||++++++|+++|++.
T Consensus 1 i~~E~~~~~~~~~~~~lt~~Cf~kCv~~-~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~ 63 (64)
T 3cjh_B 1 LEGENSKQKVQMSIHQFTNICFKKCVES-VNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63 (64)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHCCC-CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999985 99999999999999999999999999999999875
No 4
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-26 Score=145.45 Aligned_cols=69 Identities=25% Similarity=0.552 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 034780 13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPP 83 (84)
Q Consensus 13 q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~~~ 83 (84)
++++ ++.|++.|+.+||+||+.||+|||++ |++++|+++|++||+|||+|||+++++|++||++.++..
T Consensus 15 ~~~~-~e~q~k~~~~l~~~lte~Cf~kCv~~-~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~ 83 (89)
T 3dxr_A 15 QKVV-EQKQMKDFMRLYSNLVERCFTDCVND-FTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAAL 83 (89)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHHCCC-CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 57888999999999999999999996 899999999999999999999999999999999987654
No 5
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.92 E-value=1.7e-25 Score=140.42 Aligned_cols=65 Identities=22% Similarity=0.476 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 034780 17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRP 82 (84)
Q Consensus 17 ~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~~ 82 (84)
...+++++|+.+||+|++.||+|||++ |++++|+++|++||+|||+|||+++++|+++|++.++.
T Consensus 9 ~q~~q~~~~~~l~n~lte~Cf~KCv~~-~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~ 73 (89)
T 2bsk_A 9 DQIKQFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQ 73 (89)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHCCC-CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577889999999999999999985 89999999999999999999999999999999986543
No 6
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.8e-23 Score=121.75 Aligned_cols=56 Identities=25% Similarity=0.614 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 034780 21 EMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 81 (84)
Q Consensus 21 q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~ 81 (84)
+++.++++|++|++.||+|||++ + |+++|++||+|||+|||+++++|+++|.+..+
T Consensus 1 ~~a~~~~l~~~lt~~Cf~kCv~~--~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 56 (64)
T 3cjh_A 1 AVANATELVNKISENCFEKCLTS--P---YATRNDACIDQCLAKYMRSWNVISKAYISRIQ 56 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHCCT--T---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHHHHHHHCCC--c---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999986 4 99999999999999999999999999988654
No 7
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=60.48 E-value=2.8 Score=19.75 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=8.1
Q ss_pred HHHHHHhhcC
Q 034780 34 QTCFNKCVDK 43 (84)
Q Consensus 34 ~~Cf~kCV~~ 43 (84)
..||+||-.+
T Consensus 12 hmcwkkcgkk 21 (26)
T 1ter_A 12 HMCWKKCGKK 21 (26)
T ss_dssp HHHHHHHHCC
T ss_pred hHHHHHhCcc
Confidence 4699999865
No 8
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=32.14 E-value=66 Score=19.61 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=23.9
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780 51 NMGENSCIDRCVSKYWQVNSMIGQLLSA 78 (84)
Q Consensus 51 ~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~ 78 (84)
+..+..++..|.+-|-++-..+.+.+..
T Consensus 65 ~~~~~~al~dC~e~y~~a~~~L~~a~~~ 92 (153)
T 1x91_A 65 DPRSKLAYRSCVDEYESAIGNLEEAFEH 92 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998888776654
No 9
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=30.61 E-value=73 Score=19.30 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=23.6
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780 51 NMGENSCIDRCVSKYWQVNSMIGQLLSA 78 (84)
Q Consensus 51 ~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~ 78 (84)
+..+..++..|.+-|-++-..+.+.+..
T Consensus 65 ~~~~~~al~dC~e~y~~a~~~L~~a~~~ 92 (153)
T 1xg2_B 65 DPKLKGRYETCSENYADAIDSLGQAKQF 92 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998888766543
No 10
>1hp9_A Kappa-hefutoxin 1; scorpion toxin, gating modifier, voltage-gated potassium channel; NMR {Synthetic} SCOP: j.33.2.1
Probab=30.08 E-value=3.7 Score=19.43 Aligned_cols=11 Identities=36% Similarity=1.066 Sum_probs=7.5
Q ss_pred hHhHHHHHHHH
Q 034780 53 GENSCIDRCVS 63 (84)
Q Consensus 53 ~E~~Ci~~Cv~ 63 (84)
.|++|-.+|..
T Consensus 14 deetck~~cs~ 24 (26)
T 1hp9_A 14 DEETCKERCXX 24 (26)
T ss_dssp CTTHHHHHC--
T ss_pred cHHHHHHHhcc
Confidence 58889888864
No 11
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138}
Probab=27.71 E-value=51 Score=23.97 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCCCCchHhHHHHHHHHHHHHHH----------HHHHHHHHcCC
Q 034780 47 ESELNMGENSCIDRCVSKYWQVN----------SMIGQLLSAGG 80 (84)
Q Consensus 47 ~~~L~~~E~~Ci~~Cv~k~~~~~----------~~v~~~l~~~~ 80 (84)
++.|+..|..|+-+|+.||.... ..+++.|.+..
T Consensus 239 ~~~ls~~eAq~Lv~~lQ~FY~~~~~~~~~~~~r~~Lv~~Fn~~p 282 (299)
T 2p4f_A 239 DSNVSLQDAQLLLLNVQRFYGAMGSETSIAKERIQLLEDFNKGS 282 (299)
T ss_dssp TSSCCHHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHhCCC
Confidence 45799999999999999998763 45566666543
No 12
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=24.35 E-value=28 Score=16.22 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=5.8
Q ss_pred HhHHHHHH
Q 034780 54 ENSCIDRC 61 (84)
Q Consensus 54 E~~Ci~~C 61 (84)
-..|++||
T Consensus 17 lrrcldnc 24 (26)
T 2plx_B 17 LRRCLDNC 24 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 35688887
No 13
>2dqa_A Lysozyme; enzyme, substrate complex, hydrolase; HET: NAG BGC; 1.60A {Tapes japonica}
Probab=22.43 E-value=74 Score=20.24 Aligned_cols=17 Identities=24% Similarity=0.712 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHH
Q 034780 54 ENSCIDRCVSKYWQVNS 70 (84)
Q Consensus 54 E~~Ci~~Cv~k~~~~~~ 70 (84)
+-.|..+||..||.-+.
T Consensus 63 d~~Ca~~tV~~Ym~ry~ 79 (124)
T 2dqa_A 63 DINCSSKCVQQYMKRYA 79 (124)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 35788899999987654
Done!