BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034782
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CN01|COPZ_STAES Copper chaperone CopZ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=copZ PE=3 SV=1
Length = 68
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 4 LSQEVILAADLRCDRCQDRIANAISRVNDVESMEVLVSEKKVILTY 49
++Q++I + C+ C++ + +A++++N V S EV + E V + Y
Sbjct: 1 MTQKIIKVEGMSCEHCRNAVESALAKLNGVSSAEVNLDENHVRVEY 46
>sp|Q5HL55|COPZ_STAEQ Copper chaperone CopZ OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=copZ PE=3 SV=1
Length = 68
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 4 LSQEVILAADLRCDRCQDRIANAISRVNDVESMEVLVSEKKVILTY 49
++Q++I + C+ C++ + +A++++N V S EV + E V + Y
Sbjct: 1 MTQKIIKVEGMSCEHCRNAVESALAKLNGVSSAEVNLDENHVRVEY 46
>sp|E1B7X9|SMRCD_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Bos
taurus GN=SMARCAD1 PE=3 SV=2
Length = 1028
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 40 VSEKK------VILTYKSASEESSGKAAVGVKNNQSNKAVKGTAWFPSYS 83
V EKK +I++ S EES G + +NN +K ++FP+YS
Sbjct: 110 VQEKKFNKDTVIIVSEPSEDEESQGLPTMATRNNNDITNLKNLSFFPNYS 159
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 22 RIANAISRVNDVESMEVLVSEKKVILTYKSASEESSG----------KAAVGVKNNQSNK 71
RI +S +VE M++LV K +++ E+ SG K A G+KNN +
Sbjct: 4615 RIIPYLS-FGEVEKMQILVERFKPYCSFEKYDEDHSGDDKVFLDCFCKIAAGIKNNSNGH 4673
Query: 72 AVK 74
+K
Sbjct: 4674 QLK 4676
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.121 0.324
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,947,542
Number of Sequences: 539616
Number of extensions: 605367
Number of successful extensions: 1928
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1922
Number of HSP's gapped (non-prelim): 10
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)