Query 034783
Match_columns 83
No_of_seqs 119 out of 1416
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:24:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 99.7 5.5E-16 1.2E-20 100.0 9.3 80 1-80 393-472 (485)
2 PF00083 Sugar_tr: Sugar (and 99.5 1.4E-15 3.1E-20 96.5 -2.4 77 1-77 374-451 (451)
3 PRK10077 xylE D-xylose transpo 99.4 3.7E-12 8E-17 81.4 9.1 82 1-82 389-477 (479)
4 KOG0254 Predicted transporter 99.4 3.3E-12 7.2E-17 83.0 8.4 80 1-80 420-501 (513)
5 TIGR00887 2A0109 phosphate:H+ 99.4 1.3E-12 2.9E-17 84.5 6.6 73 2-75 418-501 (502)
6 KOG0253 Synaptic vesicle trans 99.0 3.5E-10 7.7E-15 71.9 3.9 69 1-70 459-527 (528)
7 TIGR01299 synapt_SV2 synaptic 99.0 2.7E-09 5.8E-14 72.5 7.1 69 1-70 673-741 (742)
8 KOG0252 Inorganic phosphate tr 98.9 2.1E-09 4.6E-14 69.6 4.2 76 1-77 431-512 (538)
9 TIGR00898 2A0119 cation transp 98.9 9.5E-09 2.1E-13 66.4 6.6 70 1-72 435-504 (505)
10 TIGR00879 SP MFS transporter, 98.8 1.8E-08 3.9E-13 63.7 6.2 71 2-72 409-480 (481)
11 PRK10489 enterobactin exporter 98.7 5E-08 1.1E-12 61.9 5.3 76 2-77 338-414 (417)
12 PRK10642 proline/glycine betai 98.6 1.8E-07 3.8E-12 60.8 5.6 68 2-70 368-437 (490)
13 KOG0255 Synaptic vesicle trans 98.5 1.2E-06 2.6E-11 57.2 8.1 75 2-76 432-506 (521)
14 TIGR00880 2_A_01_02 Multidrug 98.4 1.5E-06 3.3E-11 46.6 6.0 64 2-65 77-141 (141)
15 TIGR00903 2A0129 major facilit 98.3 6.3E-06 1.4E-10 52.2 7.8 65 2-66 104-169 (368)
16 TIGR00893 2A0114 d-galactonate 98.3 3.5E-06 7.6E-11 52.0 6.1 66 2-67 108-174 (399)
17 TIGR00710 efflux_Bcr_CflA drug 98.2 1.3E-05 2.9E-10 49.9 7.4 67 2-68 119-186 (385)
18 PRK11663 regulatory protein Uh 98.2 5.2E-06 1.1E-10 53.2 5.2 67 2-68 363-430 (434)
19 PRK11102 bicyclomycin/multidru 98.1 1.6E-05 3.5E-10 49.6 6.9 65 2-66 105-170 (377)
20 TIGR02332 HpaX 4-hydroxyphenyl 98.1 2.6E-05 5.6E-10 49.8 7.8 66 2-67 122-194 (412)
21 PRK03545 putative arabinose tr 98.1 3E-05 6.4E-10 48.9 8.0 65 2-66 123-188 (390)
22 PRK10213 nepI ribonucleoside t 98.1 2.9E-05 6.4E-10 49.3 7.5 65 2-66 134-199 (394)
23 TIGR00887 2A0109 phosphate:H+ 98.1 5.2E-05 1.1E-09 49.6 8.8 64 1-65 140-227 (502)
24 PRK10473 multidrug efflux syst 98.1 1.9E-05 4E-10 49.8 6.5 66 2-67 117-183 (392)
25 PRK15403 multidrug efflux syst 98.1 3.5E-05 7.5E-10 49.3 7.7 66 2-67 130-196 (413)
26 PRK09952 shikimate transporter 98.1 2.4E-05 5.3E-10 50.3 6.9 64 2-66 369-436 (438)
27 COG2814 AraJ Arabinose efflux 98.0 6.9E-05 1.5E-09 48.2 7.8 62 2-63 127-189 (394)
28 TIGR00894 2A0114euk Na(+)-depe 98.0 2.1E-05 4.6E-10 50.7 5.4 64 1-64 156-221 (465)
29 PLN00028 nitrate transmembrane 98.0 6.2E-05 1.3E-09 49.1 7.5 63 2-64 149-221 (476)
30 PRK10406 alpha-ketoglutarate t 98.0 2.7E-05 5.9E-10 49.9 5.8 67 2-69 362-429 (432)
31 TIGR00889 2A0110 nucleoside tr 98.0 6.5E-05 1.4E-09 48.2 7.4 67 2-68 334-408 (418)
32 PRK11273 glpT sn-glycerol-3-ph 98.0 7.8E-05 1.7E-09 48.1 7.6 59 2-60 373-433 (452)
33 TIGR00895 2A0115 benzoate tran 97.9 1.6E-05 3.4E-10 49.5 4.2 65 2-66 131-196 (398)
34 TIGR00901 2A0125 AmpG-related 97.9 7.6E-05 1.7E-09 46.4 7.2 65 2-66 109-182 (356)
35 TIGR00711 efflux_EmrB drug res 97.9 7.4E-06 1.6E-10 52.7 2.7 66 2-67 116-182 (485)
36 PRK10091 MFS transport protein 97.9 6.8E-05 1.5E-09 47.3 7.0 66 2-67 117-183 (382)
37 TIGR00903 2A0129 major facilit 97.9 2.5E-05 5.3E-10 49.5 4.9 57 2-59 306-362 (368)
38 PRK11663 regulatory protein Uh 97.9 7.5E-05 1.6E-09 48.0 7.2 64 2-65 137-201 (434)
39 TIGR00712 glpT glycerol-3-phos 97.9 7.6E-05 1.7E-09 47.9 7.0 64 2-65 144-209 (438)
40 PRK10054 putative transporter; 97.9 9.1E-05 2E-09 47.1 7.2 65 2-66 122-186 (395)
41 PRK11551 putative 3-hydroxyphe 97.9 4.1E-05 9E-10 48.3 5.1 65 2-66 129-194 (406)
42 PRK11646 multidrug resistance 97.9 0.00015 3.4E-09 46.2 7.7 64 2-65 125-188 (400)
43 PRK09874 drug efflux system pr 97.9 0.0002 4.3E-09 45.1 8.0 64 2-65 132-196 (408)
44 PRK15402 multidrug efflux syst 97.8 0.0001 2.2E-09 46.7 6.5 66 2-67 127-193 (406)
45 TIGR00712 glpT glycerol-3-phos 97.8 4.1E-05 8.8E-10 49.2 4.2 66 2-67 371-438 (438)
46 PF07690 MFS_1: Major Facilita 97.8 3.4E-05 7.3E-10 47.3 3.6 64 2-65 111-175 (352)
47 KOG2532 Permease of the major 97.8 0.00057 1.2E-08 44.9 9.2 74 2-75 154-233 (466)
48 PRK12307 putative sialic acid 97.7 0.00012 2.6E-09 46.5 5.7 36 2-37 347-382 (426)
49 PRK14995 methyl viologen resis 97.7 0.00015 3.2E-09 47.4 6.2 61 6-66 125-186 (495)
50 TIGR00900 2A0121 H+ Antiporter 97.7 0.00032 7E-09 43.2 7.5 56 2-57 118-174 (365)
51 TIGR00891 2A0112 putative sial 97.7 0.00029 6.4E-09 44.0 7.0 64 2-66 126-192 (405)
52 PRK15034 nitrate/nitrite trans 97.7 0.00077 1.7E-08 44.3 8.8 64 2-65 153-235 (462)
53 TIGR00893 2A0114 d-galactonate 97.7 0.00019 4.2E-09 44.3 5.7 57 2-58 337-395 (399)
54 TIGR00879 SP MFS transporter, 97.6 0.00034 7.5E-09 44.4 6.8 63 2-65 153-219 (481)
55 PRK11551 putative 3-hydroxyphe 97.6 0.0002 4.4E-09 45.2 5.8 37 2-38 334-370 (406)
56 PRK10077 xylE D-xylose transpo 97.6 0.001 2.3E-08 42.9 8.7 65 1-66 145-218 (479)
57 TIGR01299 synapt_SV2 synaptic 97.6 0.0011 2.3E-08 46.0 8.9 65 1-65 280-357 (742)
58 PRK11273 glpT sn-glycerol-3-ph 97.6 0.00048 1E-08 44.5 6.8 65 2-66 146-212 (452)
59 PRK12382 putative transporter; 97.5 0.0007 1.5E-08 42.7 7.1 61 2-62 328-389 (392)
60 PRK05122 major facilitator sup 97.5 0.00096 2.1E-08 42.1 7.6 67 2-69 328-395 (399)
61 TIGR00886 2A0108 nitrite extru 97.5 0.00052 1.1E-08 42.6 6.2 63 2-64 116-190 (366)
62 PRK09705 cynX putative cyanate 97.5 0.0013 2.9E-08 41.8 8.0 65 6-70 323-389 (393)
63 PRK09556 uhpT sugar phosphate 97.5 0.00059 1.3E-08 44.3 6.5 58 2-59 375-446 (467)
64 TIGR00898 2A0119 cation transp 97.5 0.003 6.5E-08 41.2 9.6 62 1-65 205-266 (505)
65 PRK15462 dipeptide/tripeptide 97.5 0.00041 8.8E-09 45.9 5.6 52 2-53 126-180 (493)
66 PRK12307 putative sialic acid 97.5 0.0004 8.8E-09 44.1 5.4 46 2-47 132-178 (426)
67 PRK10504 putative transporter; 97.5 0.00097 2.1E-08 43.1 7.1 64 2-65 124-188 (471)
68 KOG0569 Permease of the major 97.4 0.0011 2.3E-08 43.9 7.2 65 1-65 141-207 (485)
69 PRK11010 ampG muropeptide tran 97.4 0.001 2.3E-08 43.7 7.2 64 2-66 133-198 (491)
70 PRK11652 emrD multidrug resist 97.4 0.0015 3.2E-08 41.3 7.6 66 2-67 122-188 (394)
71 PRK15075 citrate-proton sympor 97.4 0.0005 1.1E-08 44.2 5.4 36 2-37 357-393 (434)
72 PRK11043 putative transporter; 97.4 0.0028 6E-08 40.2 8.4 62 2-64 120-182 (401)
73 TIGR00881 2A0104 phosphoglycer 97.4 5.5E-05 1.2E-09 46.7 0.8 64 2-65 109-174 (379)
74 PRK11195 lysophospholipid tran 97.4 0.0015 3.3E-08 41.6 7.3 64 2-66 114-177 (393)
75 COG2223 NarK Nitrate/nitrite t 97.4 0.0011 2.3E-08 43.1 6.4 63 1-64 129-195 (417)
76 cd06174 MFS The Major Facilita 97.3 0.00089 1.9E-08 40.8 5.4 57 2-58 291-348 (352)
77 KOG0255 Synaptic vesicle trans 97.3 0.0045 9.6E-08 40.8 8.8 62 1-65 196-257 (521)
78 PRK03893 putative sialic acid 97.3 0.0013 2.9E-08 42.6 6.3 63 2-65 134-197 (496)
79 PRK09528 lacY galactoside perm 97.3 0.00081 1.8E-08 42.9 5.2 65 2-66 341-407 (420)
80 TIGR00890 2A0111 Oxalate/Forma 97.3 0.00053 1.2E-08 42.3 4.3 52 2-53 321-373 (377)
81 PRK10489 enterobactin exporter 97.3 0.0047 1E-07 39.4 8.4 64 2-66 136-200 (417)
82 cd06174 MFS The Major Facilita 97.2 0.0023 5E-08 39.0 6.6 56 2-57 113-169 (352)
83 PRK10642 proline/glycine betai 97.2 0.0023 5E-08 41.9 6.8 64 1-65 143-215 (490)
84 PRK11902 ampG muropeptide tran 97.2 0.003 6.5E-08 40.2 7.0 64 2-66 120-185 (402)
85 PRK15011 sugar efflux transpor 97.2 0.0033 7.2E-08 39.9 7.2 62 2-65 331-393 (393)
86 PRK06814 acylglycerophosphoeth 97.2 0.0025 5.4E-08 45.5 7.2 65 1-66 133-198 (1140)
87 TIGR00805 oat sodium-independe 97.2 0.0038 8.2E-08 42.5 7.7 64 1-65 197-283 (633)
88 PRK03699 putative transporter; 97.2 0.0057 1.2E-07 38.8 8.0 57 2-58 121-179 (394)
89 PTZ00207 hypothetical protein; 97.2 0.005 1.1E-07 41.8 8.0 62 3-65 147-208 (591)
90 TIGR00899 2A0120 sugar efflux 97.1 0.0028 6.1E-08 39.4 6.3 64 3-66 114-180 (375)
91 PRK10406 alpha-ketoglutarate t 97.1 0.0027 5.8E-08 40.8 6.2 65 1-66 149-222 (432)
92 TIGR00892 2A0113 monocarboxyla 97.1 0.0019 4.1E-08 42.0 5.5 59 3-62 135-194 (455)
93 TIGR00897 2A0118 polyol permea 97.1 0.0049 1.1E-07 39.3 7.0 58 2-60 341-399 (402)
94 PRK08633 2-acyl-glycerophospho 97.0 0.0055 1.2E-07 43.6 7.7 38 1-38 128-165 (1146)
95 PRK03893 putative sialic acid 97.0 0.0006 1.3E-08 44.2 2.8 48 2-49 392-440 (496)
96 TIGR00890 2A0111 Oxalate/Forma 97.0 0.0034 7.4E-08 38.7 5.9 61 3-64 118-179 (377)
97 PRK10207 dipeptide/tripeptide 97.0 0.0039 8.5E-08 41.1 6.3 58 1-59 130-190 (489)
98 PF03825 Nuc_H_symport: Nucleo 97.0 0.0083 1.8E-07 38.8 7.6 65 2-66 327-399 (400)
99 TIGR00892 2A0113 monocarboxyla 96.9 0.00045 9.7E-09 44.8 1.2 55 2-56 359-415 (455)
100 PF01306 LacY_symp: LacY proto 96.9 0.0067 1.4E-07 39.5 6.4 67 2-68 338-406 (412)
101 KOG1330 Sugar transporter/spin 96.9 2.6E-05 5.6E-10 51.0 -4.6 70 1-70 146-217 (493)
102 PRK15075 citrate-proton sympor 96.8 0.011 2.3E-07 38.1 7.2 45 2-46 143-196 (434)
103 TIGR01272 gluP glucose/galacto 96.8 0.0069 1.5E-07 37.7 6.1 66 3-68 37-120 (310)
104 PRK09952 shikimate transporter 96.8 0.0074 1.6E-07 39.0 6.2 64 2-66 151-223 (438)
105 TIGR00883 2A0106 metabolite-pr 96.8 0.013 2.7E-07 36.5 7.1 65 1-66 121-194 (394)
106 COG2271 UhpC Sugar phosphate p 96.8 0.0013 2.8E-08 43.0 2.7 62 4-65 145-209 (448)
107 PRK03545 putative arabinose tr 96.8 0.016 3.5E-07 36.6 7.6 59 3-62 321-380 (390)
108 PF06609 TRI12: Fungal trichot 96.7 0.0033 7.2E-08 42.7 4.5 64 1-64 155-220 (599)
109 PRK09874 drug efflux system pr 96.6 0.0074 1.6E-07 38.1 5.3 62 3-64 338-400 (408)
110 TIGR00792 gph sugar (Glycoside 96.6 0.021 4.4E-07 36.5 7.3 65 2-66 125-198 (437)
111 TIGR00885 fucP L-fucose:H+ sym 96.6 0.02 4.3E-07 36.9 7.1 63 2-64 120-210 (410)
112 PRK15011 sugar efflux transpor 96.5 0.025 5.5E-07 35.9 7.3 54 14-67 145-199 (393)
113 KOG2816 Predicted transporter 96.5 0.029 6.2E-07 37.2 7.6 70 2-71 138-208 (463)
114 KOG2533 Permease of the major 96.5 0.0023 5E-08 42.5 2.6 64 4-67 162-232 (495)
115 TIGR00899 2A0120 sugar efflux 96.5 0.018 3.8E-07 35.9 6.3 55 2-57 314-369 (375)
116 PRK12382 putative transporter; 96.5 0.021 4.5E-07 36.1 6.6 44 2-45 138-182 (392)
117 PF11700 ATG22: Vacuole efflux 96.4 0.017 3.7E-07 38.3 6.2 66 2-68 406-473 (477)
118 PRK09584 tppB putative tripept 96.4 0.026 5.7E-07 37.4 7.0 52 2-53 138-192 (500)
119 TIGR00806 rfc RFC reduced fola 96.4 0.028 6E-07 37.7 7.0 41 2-42 140-180 (511)
120 TIGR02332 HpaX 4-hydroxyphenyl 96.4 0.0046 9.9E-08 39.7 3.2 46 2-47 359-406 (412)
121 TIGR00897 2A0118 polyol permea 96.4 0.021 4.6E-07 36.4 6.2 35 3-37 132-167 (402)
122 KOG2615 Permease of the major 96.3 0.0036 7.9E-08 40.7 2.6 37 1-37 145-181 (451)
123 PF05977 MFS_3: Transmembrane 96.3 0.045 9.7E-07 36.8 7.6 65 3-67 334-400 (524)
124 PRK09556 uhpT sugar phosphate 96.3 0.0019 4.1E-08 42.0 1.2 63 2-64 148-214 (467)
125 TIGR00924 yjdL_sub1_fam amino 96.2 0.026 5.7E-07 37.1 6.2 62 2-63 407-469 (475)
126 PF13347 MFS_2: MFS/sugar tran 96.2 0.026 5.7E-07 36.3 6.1 64 1-64 128-200 (428)
127 PRK09705 cynX putative cyanate 96.2 0.052 1.1E-06 34.6 7.3 51 2-53 123-175 (393)
128 TIGR00924 yjdL_sub1_fam amino 96.1 0.029 6.3E-07 36.9 6.0 53 2-54 128-184 (475)
129 KOG0254 Predicted transporter 96.0 0.05 1.1E-06 36.1 6.7 63 1-65 167-232 (513)
130 PRK05122 major facilitator sup 96.0 0.042 9.2E-07 34.8 6.0 49 2-50 138-187 (399)
131 TIGR00792 gph sugar (Glycoside 95.9 0.12 2.7E-06 33.0 8.1 31 7-37 349-379 (437)
132 TIGR02718 sider_RhtX_FptX side 95.9 0.12 2.7E-06 32.7 7.9 62 3-64 124-186 (390)
133 TIGR00891 2A0112 putative sial 95.9 0.014 3E-07 36.6 3.6 36 2-37 354-389 (405)
134 TIGR00896 CynX cyanate transpo 95.8 0.095 2.1E-06 32.7 7.2 49 2-51 113-164 (355)
135 PRK08633 2-acyl-glycerophospho 95.8 0.049 1.1E-06 39.0 6.5 62 2-63 348-411 (1146)
136 PRK03633 putative MFS family t 95.7 0.1 2.2E-06 33.0 7.0 56 2-57 311-367 (381)
137 TIGR00883 2A0106 metabolite-pr 95.7 0.0072 1.6E-07 37.5 1.8 36 2-37 338-374 (394)
138 PF06813 Nodulin-like: Nodulin 95.7 0.025 5.5E-07 34.6 4.0 58 4-62 124-181 (250)
139 TIGR00788 fbt folate/biopterin 95.6 0.068 1.5E-06 35.2 6.1 36 2-37 377-412 (468)
140 TIGR00881 2A0104 phosphoglycer 95.6 0.0094 2E-07 36.8 2.1 36 2-37 336-371 (379)
141 PRK11646 multidrug resistance 95.6 0.041 8.9E-07 35.2 5.0 37 2-38 323-359 (400)
142 PRK11462 putative transporter; 95.5 0.22 4.8E-06 32.7 8.2 64 2-65 135-207 (460)
143 KOG3764 Vesicular amine transp 95.5 0.0093 2E-07 39.0 1.7 68 2-69 185-254 (464)
144 KOG2504 Monocarboxylate transp 95.4 0.052 1.1E-06 36.4 5.0 59 5-63 163-222 (509)
145 PRK11010 ampG muropeptide tran 95.4 0.19 4.2E-06 33.2 7.6 62 3-65 343-405 (491)
146 PRK09528 lacY galactoside perm 95.2 0.073 1.6E-06 34.1 5.3 55 10-64 139-193 (420)
147 TIGR01301 GPH_sucrose GPH fami 95.2 0.24 5.2E-06 33.0 7.6 66 1-66 139-222 (477)
148 PRK10504 putative transporter; 95.2 0.066 1.4E-06 34.7 5.0 36 2-37 379-414 (471)
149 PRK10054 putative transporter; 95.1 0.11 2.3E-06 33.3 5.7 56 3-59 325-381 (395)
150 PRK03633 putative MFS family t 94.9 0.16 3.5E-06 32.1 6.1 35 3-37 121-155 (381)
151 PRK09669 putative symporter Ya 94.8 0.35 7.7E-06 31.3 7.5 64 2-65 135-207 (444)
152 PF05977 MFS_3: Transmembrane 94.7 0.2 4.2E-06 33.8 6.3 53 1-53 128-181 (524)
153 TIGR00894 2A0114euk Na(+)-depe 94.7 0.037 8E-07 35.9 2.9 55 3-58 388-446 (465)
154 PRK15402 multidrug efflux syst 94.6 0.22 4.7E-06 31.7 6.1 59 6-64 338-397 (406)
155 PRK06814 acylglycerophosphoeth 94.4 0.16 3.4E-06 36.7 5.7 36 2-37 360-395 (1140)
156 TIGR00895 2A0115 benzoate tran 94.0 0.091 2E-06 32.7 3.5 34 2-35 364-397 (398)
157 TIGR00710 efflux_Bcr_CflA drug 94.0 0.49 1.1E-05 29.5 6.7 55 2-58 326-380 (385)
158 TIGR00902 2A0127 phenyl propri 93.9 0.63 1.4E-05 29.5 7.2 54 3-57 320-374 (382)
159 PLN00028 nitrate transmembrane 93.9 0.046 1E-06 35.9 2.1 52 6-58 377-429 (476)
160 TIGR00900 2A0121 H+ Antiporter 93.8 0.11 2.4E-06 32.0 3.5 36 2-37 327-362 (365)
161 TIGR00882 2A0105 oligosacchari 93.8 0.25 5.3E-06 31.4 5.1 58 3-60 334-393 (396)
162 TIGR02718 sider_RhtX_FptX side 93.7 0.64 1.4E-05 29.5 6.9 48 7-54 335-383 (390)
163 PRK11128 putative 3-phenylprop 93.7 0.32 6.8E-06 30.8 5.5 57 8-65 124-181 (382)
164 PRK15034 nitrate/nitrite trans 93.3 0.47 1E-05 31.6 5.9 53 10-62 400-454 (462)
165 PF03092 BT1: BT1 family; Int 93.3 0.35 7.6E-06 31.7 5.3 58 6-64 119-177 (433)
166 TIGR00882 2A0105 oligosacchari 93.2 0.56 1.2E-05 29.8 6.0 53 13-65 134-186 (396)
167 TIGR00902 2A0127 phenyl propri 93.0 0.46 9.9E-06 30.2 5.4 44 7-50 123-167 (382)
168 PF00083 Sugar_tr: Sugar (and 92.9 0.00096 2.1E-08 42.8 -6.7 65 1-65 127-194 (451)
169 COG2211 MelB Na+/melibiose sym 92.9 1.6 3.5E-05 29.3 7.9 60 6-65 143-210 (467)
170 PRK11102 bicyclomycin/multidru 92.9 0.83 1.8E-05 28.6 6.5 19 3-22 314-332 (377)
171 COG2271 UhpC Sugar phosphate p 92.5 0.064 1.4E-06 35.4 1.2 61 2-62 372-434 (448)
172 PF03092 BT1: BT1 family; Int 92.0 1.9 4E-05 28.4 7.4 67 2-69 344-419 (433)
173 PF11700 ATG22: Vacuole efflux 91.6 1.2 2.7E-05 29.7 6.3 57 11-67 187-252 (477)
174 PRK15403 multidrug efflux syst 91.3 2.7 5.9E-05 27.2 7.6 48 9-56 344-391 (413)
175 KOG2563 Permease of the major 91.3 0.57 1.2E-05 31.4 4.4 34 4-37 168-201 (480)
176 PRK03699 putative transporter; 91.2 2 4.4E-05 27.3 6.8 50 8-57 325-375 (394)
177 PRK09584 tppB putative tripept 90.9 1.3 2.8E-05 29.6 5.9 57 3-59 409-476 (500)
178 PRK11195 lysophospholipid tran 90.7 2 4.4E-05 27.5 6.5 57 3-59 320-377 (393)
179 TIGR00788 fbt folate/biopterin 90.3 1.4 3E-05 29.2 5.6 53 13-66 159-212 (468)
180 PRK09848 glucuronide transport 89.5 4.2 9E-05 26.5 8.2 31 7-37 357-387 (448)
181 PF04281 Tom22: Mitochondrial 89.2 2.6 5.5E-05 23.7 5.3 24 2-25 61-84 (137)
182 PRK10473 multidrug efflux syst 89.2 1.5 3.2E-05 27.8 5.0 31 4-37 318-348 (392)
183 PRK10091 MFS transport protein 88.5 4.6 9.9E-05 25.6 7.4 49 5-55 319-369 (382)
184 PRK11462 putative transporter; 88.2 5.6 0.00012 26.3 7.6 31 7-37 354-386 (460)
185 TIGR00926 2A1704 Peptide:H+ sy 88.0 5 0.00011 28.1 7.1 54 5-58 594-647 (654)
186 PF03209 PUCC: PUCC protein; 88.0 5.9 0.00013 26.2 7.2 36 2-37 115-150 (403)
187 COG5336 Uncharacterized protei 87.8 3 6.4E-05 22.6 6.9 52 6-57 36-90 (116)
188 PRK11043 putative transporter; 87.8 3.2 7E-05 26.4 5.8 34 3-37 323-356 (401)
189 PF00854 PTR2: POT family; In 87.4 3.3 7.1E-05 26.4 5.7 50 8-57 68-118 (372)
190 TIGR01301 GPH_sucrose GPH fami 87.3 3.2 7E-05 27.9 5.8 57 11-67 417-476 (477)
191 COG3104 PTR2 Dipeptide/tripept 87.2 0.15 3.3E-06 34.2 -0.3 48 10-57 153-201 (498)
192 PRK10429 melibiose:sodium symp 86.9 6.8 0.00015 25.8 9.0 64 2-65 132-204 (473)
193 COG2270 Permeases of the major 86.6 1.1 2.3E-05 29.9 3.2 36 2-37 367-402 (438)
194 KOG2325 Predicted transporter/ 86.4 4 8.8E-05 27.7 5.8 60 6-65 159-232 (488)
195 PRK10133 L-fucose transporter; 86.1 7.5 0.00016 25.5 7.6 33 3-35 144-176 (438)
196 KOG4686 Predicted sugar transp 86.0 2 4.4E-05 27.8 4.1 36 2-37 378-413 (459)
197 KOG3762 Predicted transporter 85.6 1.9 4.1E-05 29.8 4.0 57 2-58 485-543 (618)
198 TIGR00986 3a0801s05tom22 mitoc 85.3 4.9 0.00011 22.8 5.0 23 2-24 59-81 (145)
199 PF10183 ESSS: ESSS subunit of 84.2 3.9 8.5E-05 21.8 4.2 34 39-72 58-91 (105)
200 PF07690 MFS_1: Major Facilita 84.2 1.9 4.2E-05 26.4 3.5 28 2-29 325-352 (352)
201 PRK11902 ampG muropeptide tran 83.1 9.7 0.00021 24.4 6.9 58 3-65 334-392 (402)
202 PRK10207 dipeptide/tripeptide 82.9 11 0.00024 25.2 6.8 58 3-60 406-474 (489)
203 COG2807 CynX Cyanate permease 81.6 12 0.00026 24.8 6.2 50 10-59 331-382 (395)
204 TIGR00711 efflux_EmrB drug res 81.5 4.6 0.0001 26.2 4.6 35 3-37 375-409 (485)
205 PF06379 RhaT: L-rhamnose-prot 80.0 5.6 0.00012 25.8 4.4 33 5-37 90-122 (344)
206 PRK03612 spermidine synthase; 79.3 17 0.00036 24.8 6.7 46 12-57 145-192 (521)
207 TIGR00926 2A1704 Peptide:H+ sy 79.0 20 0.00043 25.3 8.6 50 9-58 121-178 (654)
208 COG2814 AraJ Arabinose efflux 78.3 17 0.00037 24.1 8.4 54 6-59 329-383 (394)
209 COG2223 NarK Nitrate/nitrite t 77.2 9.6 0.00021 25.4 4.9 53 9-61 346-400 (417)
210 TIGR00769 AAA ADP/ATP carrier 75.0 23 0.0005 24.0 6.8 35 2-36 155-189 (472)
211 PRK15462 dipeptide/tripeptide 74.7 24 0.00051 24.0 6.4 32 2-33 403-435 (493)
212 KOG0253 Synaptic vesicle trans 74.3 24 0.00053 23.9 7.3 61 3-65 192-253 (528)
213 PRK09669 putative symporter Ya 73.8 22 0.00047 23.2 7.9 29 9-37 359-387 (444)
214 PRK10429 melibiose:sodium symp 71.4 27 0.00058 23.1 7.9 32 6-37 359-392 (473)
215 COG0861 TerC Membrane protein 69.4 25 0.00053 21.9 7.7 34 4-37 44-77 (254)
216 PRK10213 nepI ribonucleoside t 69.3 27 0.00059 22.4 7.6 48 9-56 337-385 (394)
217 TIGR01272 gluP glucose/galacto 68.3 26 0.00056 21.9 5.3 35 10-45 263-298 (310)
218 KOG2532 Permease of the major 68.3 8.1 0.00018 25.9 3.2 54 7-60 388-445 (466)
219 COG0738 FucP Fucose permease [ 67.8 34 0.00075 23.0 6.7 67 3-69 131-218 (422)
220 KOG1237 H+/oligopeptide sympor 66.4 23 0.0005 24.6 5.0 33 5-37 487-519 (571)
221 KOG2533 Permease of the major 65.1 9.6 0.00021 25.9 3.0 35 10-44 402-438 (495)
222 COG0738 FucP Fucose permease [ 64.7 33 0.00071 23.1 5.3 39 17-55 363-402 (422)
223 KOG2504 Monocarboxylate transp 64.4 0.61 1.3E-05 31.4 -2.6 53 3-55 415-469 (509)
224 PRK11128 putative 3-phenylprop 62.9 37 0.00079 21.6 7.9 48 6-53 322-370 (382)
225 PRK09848 glucuronide transport 62.4 41 0.00088 21.9 7.3 18 6-23 140-157 (448)
226 PRK11652 emrD multidrug resist 61.2 40 0.00086 21.4 6.8 34 3-37 326-359 (394)
227 KOG4473 Uncharacterized membra 58.7 41 0.00088 20.7 7.4 32 6-37 158-189 (247)
228 PF04120 Iron_permease: Low af 57.8 32 0.00069 19.3 4.4 32 39-71 38-69 (132)
229 KOG3098 Uncharacterized conser 57.8 58 0.0012 22.2 6.1 31 7-37 383-413 (461)
230 PF06570 DUF1129: Protein of u 56.8 40 0.00086 20.0 5.0 7 62-68 170-176 (206)
231 TIGR00896 CynX cyanate transpo 56.5 40 0.00086 21.0 4.6 27 11-37 321-347 (355)
232 PF05631 DUF791: Protein of un 56.2 55 0.0012 21.5 8.0 64 5-68 155-222 (354)
233 KOG2927 Membrane component of 55.1 17 0.00037 23.8 2.7 26 6-31 185-210 (372)
234 PF05145 AmoA: Putative ammoni 53.7 57 0.0012 20.9 5.6 59 5-69 22-82 (318)
235 PF05545 FixQ: Cbb3-type cytoc 53.3 22 0.00047 16.0 3.1 11 55-65 24-34 (49)
236 TIGR00889 2A0110 nucleoside tr 53.1 53 0.0012 21.4 4.9 42 23-65 141-182 (418)
237 PF01350 Flavi_NS4A: Flaviviru 53.0 42 0.00091 19.1 4.0 26 48-73 102-128 (144)
238 PTZ00207 hypothetical protein; 52.6 62 0.0013 22.7 5.2 64 2-66 478-556 (591)
239 PRK14995 methyl viologen resis 52.0 37 0.00079 22.6 4.1 35 3-37 378-412 (495)
240 PF11023 DUF2614: Protein of u 51.9 39 0.00084 18.4 6.1 10 8-17 10-19 (114)
241 KOG2615 Permease of the major 51.7 11 0.00025 25.2 1.6 34 4-37 380-413 (451)
242 PF10112 Halogen_Hydrol: 5-bro 49.5 53 0.0011 19.3 7.5 10 21-30 10-19 (199)
243 PF06785 UPF0242: Uncharacteri 49.0 21 0.00045 23.4 2.4 37 23-59 21-58 (401)
244 COG2807 CynX Cyanate permease 49.0 79 0.0017 21.2 6.9 48 10-57 132-181 (395)
245 PF03741 TerC: Integral membra 47.4 58 0.0013 19.1 8.9 34 5-38 25-58 (183)
246 PF13974 YebO: YebO-like prote 46.3 13 0.00028 19.0 1.1 25 48-72 4-28 (80)
247 PF12732 YtxH: YtxH-like prote 45.6 38 0.00083 16.5 3.5 24 48-71 6-29 (74)
248 COG1422 Predicted membrane pro 43.1 75 0.0016 19.2 5.0 6 44-49 50-55 (201)
249 COG1288 Predicted membrane pro 42.4 1E+02 0.0023 21.1 4.9 51 18-68 187-244 (481)
250 PF01306 LacY_symp: LacY proto 41.3 1.1E+02 0.0024 20.6 7.8 46 15-60 141-186 (412)
251 PF04531 Phage_holin_1: Bacter 41.1 52 0.0011 16.8 7.0 25 56-80 58-82 (84)
252 COG2274 SunT ABC-type bacterio 40.8 1.4E+02 0.003 21.7 5.9 17 56-72 308-324 (709)
253 PF11240 DUF3042: Protein of u 40.6 43 0.00094 15.7 2.7 19 62-80 26-44 (54)
254 KOG4111 Translocase of outer m 40.1 71 0.0015 18.0 4.8 16 2-17 52-67 (136)
255 PF05298 Bombinin: Bombinin; 39.6 9.7 0.00021 20.7 0.0 18 64-81 104-121 (141)
256 PHA03231 glycoprotein BALF4; P 39.5 1.5E+02 0.0032 22.1 5.5 22 14-35 676-697 (829)
257 PF11712 Vma12: Endoplasmic re 39.1 71 0.0015 17.8 6.9 28 8-35 71-98 (142)
258 PF10841 DUF2644: Protein of u 38.0 51 0.0011 15.8 3.1 30 3-32 2-32 (60)
259 COG3817 Predicted membrane pro 37.9 1.1E+02 0.0023 19.5 6.4 36 40-75 124-159 (313)
260 TIGR03513 GldL_gliding gliding 36.3 1E+02 0.0022 18.7 6.3 7 44-50 32-38 (202)
261 KOG0252 Inorganic phosphate tr 35.2 1.6E+02 0.0034 20.7 6.5 48 5-56 81-129 (538)
262 PF06196 DUF997: Protein of un 35.0 27 0.00058 17.7 1.2 16 13-28 12-27 (80)
263 PF11696 DUF3292: Protein of u 34.3 1.2E+02 0.0026 21.8 4.4 27 9-35 125-151 (642)
264 KOG2881 Predicted membrane pro 33.8 1.3E+02 0.0028 19.2 8.2 18 62-79 154-172 (294)
265 PRK02935 hypothetical protein; 33.7 84 0.0018 17.0 6.6 19 43-61 42-60 (110)
266 PF13829 DUF4191: Domain of un 33.6 1.2E+02 0.0026 18.7 5.8 12 39-50 50-61 (224)
267 PF10997 DUF2837: Protein of u 33.0 1.2E+02 0.0026 19.0 3.9 24 8-31 175-198 (254)
268 PF14147 Spore_YhaL: Sporulati 32.4 62 0.0013 15.1 2.1 16 58-73 19-34 (52)
269 cd02435 CCC1 CCC1. CCC1: This 32.0 1.3E+02 0.0028 18.6 7.4 27 9-36 151-177 (241)
270 COG3104 PTR2 Dipeptide/tripept 32.0 1.2E+02 0.0027 21.0 4.1 57 4-60 422-485 (498)
271 PF01770 Folate_carrier: Reduc 31.9 1.6E+02 0.0035 19.8 8.4 32 6-37 123-154 (412)
272 PRK10133 L-fucose transporter; 31.1 1.6E+02 0.0034 19.4 6.0 39 10-49 380-420 (438)
273 cd01324 cbb3_Oxidase_CcoQ Cyto 30.4 63 0.0014 14.6 3.0 16 52-67 22-37 (48)
274 COG1862 YajC Preprotein transl 30.0 90 0.002 16.5 2.7 20 57-76 21-40 (97)
275 PF12676 DUF3796: Protein of u 29.3 1E+02 0.0023 16.8 6.6 23 10-32 55-77 (118)
276 KOG4782 Predicted membrane pro 29.2 51 0.0011 17.4 1.6 30 48-77 65-94 (108)
277 PF05297 Herpes_LMP1: Herpesvi 28.9 19 0.0004 23.2 0.0 59 9-68 129-191 (381)
278 PRK09173 F0F1 ATP synthase sub 27.9 61 0.0013 18.3 2.0 8 50-57 11-18 (159)
279 PF14362 DUF4407: Domain of un 25.9 1.8E+02 0.0038 18.3 7.8 24 9-32 13-36 (301)
280 TIGR00869 sec62 protein transl 25.7 1.7E+02 0.0037 18.1 5.2 7 12-18 120-126 (232)
281 PF00672 HAMP: HAMP domain; I 24.8 88 0.0019 14.4 3.9 21 56-76 13-33 (70)
282 PF12575 DUF3753: Protein of u 24.2 1.1E+02 0.0024 15.3 3.3 8 56-63 63-70 (72)
283 PF09788 Tmemb_55A: Transmembr 24.0 2E+02 0.0043 18.2 5.7 9 9-17 194-202 (256)
284 KOG4550 Predicted membrane pro 24.0 1.3E+02 0.0027 20.8 3.0 28 48-75 570-597 (606)
285 cd02432 Nodulin-21_like_1 Nodu 23.9 1.8E+02 0.0039 17.7 8.8 27 9-36 134-160 (218)
286 PF03839 Sec62: Translocation 23.5 1.9E+02 0.0041 17.8 6.2 23 7-29 107-129 (224)
287 PF13105 DUF3959: Protein of u 23.4 1.8E+02 0.004 17.6 7.6 12 42-53 130-141 (239)
288 PF06645 SPC12: Microsomal sig 23.3 1.1E+02 0.0025 15.2 5.0 33 24-57 19-51 (76)
289 COG5478 Predicted small integr 23.1 91 0.002 17.7 2.0 21 56-76 59-79 (141)
290 PF04695 Pex14_N: Peroxisomal 23.0 49 0.0011 18.4 1.0 16 64-79 31-46 (136)
291 KOG2325 Predicted transporter/ 22.9 25 0.00054 24.1 -0.2 36 2-37 414-449 (488)
292 PF09753 Use1: Membrane fusion 22.3 1.6E+02 0.0035 18.1 3.2 6 55-60 241-246 (251)
293 PHA02692 hypothetical protein; 22.2 1.2E+02 0.0026 15.1 3.2 8 55-62 60-67 (70)
294 PF05978 UNC-93: Ion channel r 21.9 1.7E+02 0.0037 16.7 6.4 22 10-31 39-60 (156)
295 PF06800 Sugar_transport: Suga 21.6 2.3E+02 0.0049 18.0 5.7 32 38-69 219-250 (269)
296 COG5050 EPT1 sn-1,2-diacylglyc 20.9 2.1E+02 0.0045 19.1 3.5 46 3-48 39-85 (384)
297 PF13571 DUF4133: Domain of un 20.8 1.5E+02 0.0033 15.7 4.3 50 15-65 18-67 (96)
298 COG2211 MelB Na+/melibiose sym 20.6 3E+02 0.0065 19.0 8.4 31 7-37 363-395 (467)
299 PHA02844 putative transmembran 20.5 1.4E+02 0.003 15.1 3.5 8 56-63 63-70 (75)
300 PF03219 TLC: TLC ATP/ADP tran 20.3 3.1E+02 0.0066 19.0 8.2 36 2-37 170-205 (491)
301 PF00606 Glycoprotein_B: Herpe 20.3 34 0.00074 24.6 0.0 22 12-33 638-659 (713)
302 PRK13499 rhamnose-proton sympo 20.1 2.7E+02 0.0059 18.3 5.8 31 7-37 92-122 (345)
303 TIGR03718 R_switched_Alx integ 20.1 2.6E+02 0.0056 18.1 9.2 49 5-54 92-140 (302)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.67 E-value=5.5e-16 Score=100.04 Aligned_cols=80 Identities=28% Similarity=0.345 Sum_probs=74.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHhhc
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKL 80 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~~ 80 (83)
.+|+||++.|+++++++..++|+.++++.+.+|++.+.-+...|++|.+.+++..++.++++|||||++..|+.++++++
T Consensus 393 ~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 393 GAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 37999999999999999999999999999999999995445899999999999999999999999999999998887765
No 2
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.48 E-value=1.4e-15 Score=96.52 Aligned_cols=77 Identities=35% Similarity=0.609 Sum_probs=70.3
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI 77 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~ 77 (83)
.+|+||++.|+++.+++..++|+++++.+.++|.+.+ .+....+.++++++.+..++.++++||||+++++|+++++
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 4799999999999999999999999999999999888 4447889999999999999999999999999999999864
No 3
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.40 E-value=3.7e-12 Score=81.44 Aligned_cols=82 Identities=28% Similarity=0.466 Sum_probs=70.6
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM-------EWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEI 73 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~ 73 (83)
++|++|++.|++++|+....+++++++.+.++|.+. ..++...|.++++.+++..++.+++.||||+++++|.
T Consensus 389 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 468 (479)
T PRK10077 389 LSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM 468 (479)
T ss_pred hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence 379999999999999999999999999999998776 2455677888888888888888888999999999999
Q ss_pred HHHHhhccC
Q 034783 74 QASITKLSR 82 (83)
Q Consensus 74 ~~~~~~~~~ 82 (83)
++.++++.+
T Consensus 469 ~~~~~~~~~ 477 (479)
T PRK10077 469 EALWEPETK 477 (479)
T ss_pred HHHHhhccc
Confidence 888877654
No 4
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.39 E-value=3.3e-12 Score=83.04 Aligned_cols=80 Identities=40% Similarity=0.637 Sum_probs=71.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHH-HHHHhcccCCCCCHHHHHHHHh
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSK-TGTFSIFWVICAAGVA-FVTFLVPETKGRTLEEIQASIT 78 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~et~~~~~~~~~~~~~ 78 (83)
.+|+||.+.|+++.+++..++|+.++++...++.+..... ...|++|+.++.+..+ +.++++||||+++++|+++.+.
T Consensus 420 ~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 420 VSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred hhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 3799999999999999999999999999999999988553 7788888888888888 7889999999999999998775
Q ss_pred hc
Q 034783 79 KL 80 (83)
Q Consensus 79 ~~ 80 (83)
+.
T Consensus 500 ~~ 501 (513)
T KOG0254|consen 500 EG 501 (513)
T ss_pred cC
Confidence 43
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.39 E-value=1.3e-12 Score=84.52 Aligned_cols=73 Identities=27% Similarity=0.469 Sum_probs=61.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWS-----------KTGTFSIFWVICAAGVAFVTFLVPETKGRTL 70 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 70 (83)
+|++|++.|+++.|+++.++++++++.+.+++.+.+.. ....++++++++++..++ ++++|||+++++
T Consensus 418 ~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~l 496 (502)
T TIGR00887 418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSL 496 (502)
T ss_pred hccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCH
Confidence 79999999999999999999999999999999988721 245678888887776664 467899999999
Q ss_pred HHHHH
Q 034783 71 EEIQA 75 (83)
Q Consensus 71 ~~~~~ 75 (83)
+|+++
T Consensus 497 eei~~ 501 (502)
T TIGR00887 497 EELSG 501 (502)
T ss_pred HhhhC
Confidence 88764
No 6
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.02 E-value=3.5e-10 Score=71.89 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=61.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 70 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 70 (83)
.+|+||+.+|++|.|.++.++++++++.|++. ...+.+...+.++|+..+++..+...++--||||+++
T Consensus 459 tPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 459 TPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred cCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 37999999999999999999999999999998 4555666778999999999999998888889999864
No 7
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.98 E-value=2.7e-09 Score=72.51 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=57.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 70 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 70 (83)
++|++|++.|++++|+.+..+++++++.|.+.+.+.......++.+++++.+++.++. .++|||+++.+
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~-~~LPET~~~~l 741 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLA-LKLPDTRGQVL 741 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhCCCCccccc
Confidence 3799999999999999999999999999999988877555667777777777765554 46799998753
No 8
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.90 E-value=2.1e-09 Score=69.59 Aligned_cols=76 Identities=29% Similarity=0.423 Sum_probs=63.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME------WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQ 74 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~ 74 (83)
.+|+||+++|+++.+++.+++.+++++..+.+.++.+ .+....+++++.+++++.+. ..++||||+++++|++
T Consensus 431 paE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~-T~l~pEtk~~~leei~ 509 (538)
T KOG0252|consen 431 PAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF-TLLIPETKGKSLEEIS 509 (538)
T ss_pred ehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe-eEEeecccccCHHHhc
Confidence 3799999999999999999999999999999998887 23466788888887776555 4568899999999986
Q ss_pred HHH
Q 034783 75 ASI 77 (83)
Q Consensus 75 ~~~ 77 (83)
++.
T Consensus 510 ~e~ 512 (538)
T KOG0252|consen 510 NEE 512 (538)
T ss_pred Chh
Confidence 543
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=98.87 E-value=9.5e-09 Score=66.45 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=57.6
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 72 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 72 (83)
.+|++|++.|++++|+.+..+++++++.|.+.. +...+...+++++++..++..+.. +++|||++++++|
T Consensus 435 ~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 435 TAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred hcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 379999999999999999999999999999988 555556677888887777776654 5789999987653
No 10
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.81 E-value=1.8e-08 Score=63.70 Aligned_cols=71 Identities=38% Similarity=0.629 Sum_probs=62.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 72 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 72 (83)
+|.+|++.|+++.++...+..+++++.+.+.+.+.+ .++...|+++++++++..+..+++.||+++++.++
T Consensus 409 ~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 689999999999999999999999999999998887 56667788888888888888888889999887653
No 11
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.68 E-value=5e-08 Score=61.85 Aligned_cols=76 Identities=8% Similarity=-0.149 Sum_probs=65.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI 77 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~ 77 (83)
.|..|++.|+++.|+.+..+.++..+.+.+.+.+.+ .+....+.+++++..+..++.+...+++|+.+.+|++++.
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 338 QTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred HhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 477899999999999999999999999999999998 5666777788888777777878889999999998876653
No 12
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.57 E-value=1.8e-07 Score=60.80 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=48.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRTL 70 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 70 (83)
+|++|++.|++++++.+.++++++.+.+.+.+.+.+ .+ +..++++..+..++. ++..+++||+++...
T Consensus 368 ~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~-~~~~~~~pes~~~~~ 437 (490)
T PRK10642 368 PAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIG-LITGVTMKETANRPL 437 (490)
T ss_pred HHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-HHHHHHhccccCCCC
Confidence 589999999999999888888889999999888877 33 333444444444443 344556799866543
No 13
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.50 E-value=1.2e-06 Score=57.20 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=58.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQAS 76 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~ 76 (83)
+|++|+.+|..+.+.....+.+++++++++............+.+++....+..+.+..++|||+++++.+..++
T Consensus 432 ~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 432 AELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence 699999999999999999999999999998655544333333333677777777777789999999998664433
No 14
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.42 E-value=1.5e-06 Score=46.61 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
.|.+|++.|+++.++....+.++..+.+.+.+.+.+ .++.+.+.+.+...++..+..++..||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 578999999999999999999999999999988887 4555677777777777777766666664
No 15
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.31 E-value=6.3e-06 Score=52.16 Aligned_cols=65 Identities=15% Similarity=-0.039 Sum_probs=56.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|++++++....+.++..+.+.+.+.+.+ .+|+..|.+.+++.++..++.++++||..
T Consensus 104 ~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 104 ASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 577899999999999999999999999999888887 67888888888888888888888888854
No 16
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.28 E-value=3.5e-06 Score=52.04 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=53.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
+|.+|++.|+++.++......++..+.+.+...+.+ .++.+.|.+.++..++..+..++..||++.
T Consensus 108 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 108 ASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 588999999999999999999999999998887777 667777877777777766666666666543
No 17
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.20 E-value=1.3e-05 Score=49.87 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 68 (83)
+|.+|.+.|+++.++......++..+.+.+...+.+ .++...+++.++..++..+..++..||++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 578999999999999999999999999999888877 5667778877777777777766777876543
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.17 E-value=5.2e-06 Score=53.23 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=54.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 68 (83)
+|.+|++.|+++.|+.+..+.+++++.|.+.+.+.+ .++...|...+++.++..+..+...++.+++
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 588999999999999999999999999999999988 6666777777777777766665555554443
No 19
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.14 E-value=1.6e-05 Score=49.60 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=53.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|+++.++.+....++..+.+.+.+.+.+ .++.+.|.+.+.+.++..+...+++||++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 105 RDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 578899999999999999999999999998888877 56677888888877777777767777753
No 20
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.13 E-value=2.6e-05 Score=49.83 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=54.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
+|.+|.+.|++++++......++..+.+.+...+.. .++++.|.+.++..++..++.++++||+.+
T Consensus 122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 122 TFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 588999999999999999888999999888777763 367788888888877777777777888754
No 21
>PRK03545 putative arabinose transporter; Provisional
Probab=98.13 E-value=3e-05 Score=48.94 Aligned_cols=65 Identities=14% Similarity=-0.100 Sum_probs=53.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|++++|+......++..+.+.+...+.+ .++++.|++.+++.++..+..+..+||.+
T Consensus 123 ~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 123 IRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 578899999999999999999999999998887777 67788888888888777766666677643
No 22
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.10 E-value=2.9e-05 Score=49.33 Aligned_cols=65 Identities=12% Similarity=-0.011 Sum_probs=52.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|+++.++......++..+.+.+.+.+.+ .++.+.|++.+.+.++..++.....||++
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 578999999999999999999999999999998887 67777888877766665555555677754
No 23
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.10 E-value=5.2e-05 Score=49.55 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=44.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------hhhHHHHHHHHHHHHHHHH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME------------------------WSKTGTFSIFWVICAAGVA 56 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~------------------------~~~~~~~~~~~~~~~~~~~ 56 (83)
++|.+|++.|++++++......++..+.+.+...+.. .+|+..+ ..+++..+...
T Consensus 140 ~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~-~~~~ip~~i~~ 218 (502)
T TIGR00887 140 TSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI-GFGAVPALLAL 218 (502)
T ss_pred HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH-HHHHHHHHHHH
Confidence 3699999999999999998888888877776554432 1344455 44444444445
Q ss_pred HHHHhcccC
Q 034783 57 FVTFLVPET 65 (83)
Q Consensus 57 ~~~~~~~et 65 (83)
+..+++||+
T Consensus 219 ~~~~~lpES 227 (502)
T TIGR00887 219 YFRLTIPET 227 (502)
T ss_pred HHHHhCCCC
Confidence 555778996
No 24
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.09 E-value=1.9e-05 Score=49.79 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=53.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
+|.+|.+.|+++.++.+....++..+.+.+...+.+ .++.+.+.+.+++.++..++..+.+||++.
T Consensus 117 ~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 117 RDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 578899999999999998888888888888776665 566677888888877777777777887654
No 25
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.09 E-value=3.5e-05 Score=49.31 Aligned_cols=66 Identities=15% Similarity=0.006 Sum_probs=54.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
+|.+|.+.|.+++++......++..+.+.+...+.+ .++.+.|++.++..++..+..++.+||++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 578999999999999999999999999988877777 577788888888877776666667888753
No 26
>PRK09952 shikimate transporter; Provisional
Probab=98.08 E-value=2.4e-05 Score=50.31 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=44.1
Q ss_pred CCCCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-h-h-hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHH-CINWTITFTFHFMME-W-S-KTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~-~~~~~~~~~~~~l~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|++|++.|+++.++.+..+. +++.+.|.+...+.+ . + +...+.+.++. .+...+..+.++|++
T Consensus 369 ~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 369 TEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAG-CLISAMTALLMKDNQ 436 (438)
T ss_pred HHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH-HHHHHHHHHHccccc
Confidence 689999999999999887765 788999999999887 3 2 23334433334 343444445566644
No 27
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.00 E-value=6.9e-05 Score=48.21 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=57.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP 63 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (83)
+++.|++.|++++++.....-+...+..-+-.++-+ .+|+..|+..+.++++..+..+..+|
T Consensus 127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 478899999999999999999999988888888888 89999999999999999999999999
No 28
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.98 E-value=2.1e-05 Score=50.67 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=52.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
++|.+|.+.|+++.++......++.++.+.+...+.+ . ++...|.+.++..++..+..+...+|
T Consensus 156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 3688999999999999999999999999999888877 3 67778888888777766665555554
No 29
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.98 E-value=6.2e-05 Score=49.05 Aligned_cols=63 Identities=10% Similarity=-0.026 Sum_probs=46.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME----------WSKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
+|.+|.+.|+++.++....+.+++.+.+.+.|.+.. .++++.|.+.+++.++..+..+++.++
T Consensus 149 ~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 149 STMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 578999999999999988777787777776665532 256778888888877776666554443
No 30
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.98 E-value=2.7e-05 Score=49.89 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 69 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 69 (83)
+|+||++.|++++|+.+..+++ .+...+.+...+...+.+...+++.+...+.......+ .++++++
T Consensus 362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~-l~~~~~~ 429 (432)
T PRK10406 362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM-LHRKGKG 429 (432)
T ss_pred HHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH-hhhcccc
Confidence 6999999999999999987765 35556666664433443333344444444443443333 3444544
No 31
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.97 E-value=6.5e-05 Score=48.20 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=53.9
Q ss_pred CCCCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh-h------hHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783 2 AEIFPINMKGLAGSLVI-FIHHCINWTITFTFHFMMEW-S------KTGTFSIFWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~-~~~~~~~~~~~~~~~~l~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 68 (83)
+|.+|++.|+++.|+.+ ..+.++.++.|.+.+.+.+. + +...|.+.+++.++..++.+++++|+++.
T Consensus 334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 57899999999999997 56678999999999988872 2 34567777778788888888888887554
No 32
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.96 E-value=7.8e-05 Score=48.12 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWT-ITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
.|.+|++.|+++.|+.+....+++.+ .+.+.+.+.+ .+....|.+.++.++++.+....
T Consensus 373 ~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 373 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999988888765 6888888888 56667777777777776665543
No 33
>TIGR00895 2A0115 benzoate transport.
Probab=97.95 E-value=1.6e-05 Score=49.48 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=52.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|+++.++......++..+.+.+.+.+.+ .++...+.+.+++..+..++.+.++||+.
T Consensus 131 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 578999999999999999999999999999888877 56666677776666666666667778763
No 34
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.94 E-value=7.6e-05 Score=46.42 Aligned_cols=65 Identities=14% Similarity=-0.007 Sum_probs=49.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--------hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS--------KTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|+.+.++......++..+.+.+...+.. .+ +...|++.++..++..+..++..||.+
T Consensus 109 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 109 LEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 688999999999999998889999988888877766 44 667777777766665555444567753
No 35
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.94 E-value=7.4e-06 Score=52.65 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
+|.+|++.|+++.++......++..+.+.+.+.+.+ .++.+.|++.+...++..+...+..||++.
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 588999999999999999999999999999888877 677777887777777766666667776543
No 36
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.94 E-value=6.8e-05 Score=47.29 Aligned_cols=66 Identities=18% Similarity=0.081 Sum_probs=51.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
+|.+|.+.|++++++......++..+.+.+...+.+ .++.+.|.+.+++..+..+..++++||.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 117 SKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 467888899999999888888888888887777666 577788888888777776666677888543
No 37
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.93 E-value=2.5e-05 Score=49.51 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=47.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
+|++|++.|+++.++.+..++++++..+.+.+.+.. +....|.++++..++..+...
T Consensus 306 ~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 306 GKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999998887774 555677778777777666653
No 38
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.93 E-value=7.5e-05 Score=47.96 Aligned_cols=64 Identities=9% Similarity=-0.003 Sum_probs=51.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|.+|.+.|++++++......++..+.+.+...+.+ .++++.|.+.+++.++..++..++++|+
T Consensus 137 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 137 TAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 578899999999999999999999999998888877 6777788877777666655555566654
No 39
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.91 E-value=7.6e-05 Score=47.93 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=49.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|.+|.+.|+++.|+.+....+++.+.+.+...... .++...|++.++++++..+..++++||+
T Consensus 144 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 144 VHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 578999999999999988888888888777665444 4667778888888777777766777764
No 40
>PRK10054 putative transporter; Provisional
Probab=97.90 E-value=9.1e-05 Score=47.12 Aligned_cols=65 Identities=14% Similarity=-0.054 Sum_probs=51.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|++.|+++.|+.+....++.++.+.+...+...++...|.+.++...+..+...+++||++
T Consensus 122 ~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 122 ADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 47789999999999999999999999999988877666677777777666666555555566553
No 41
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.86 E-value=4.1e-05 Score=48.33 Aligned_cols=65 Identities=15% Similarity=-0.040 Sum_probs=49.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|++++++.+....++..+.+.+...+.+ .++...|++.++..++..+....++||+.
T Consensus 129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 588999999999999998888888888887666655 55666777777666666666666677753
No 42
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.86 E-value=0.00015 Score=46.16 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=52.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
.|.+|.+.|+++.|+.+....++..+.+.+.+.+...++.+.|++.+...++..+...+..||.
T Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 125 IKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4778999999999999999999999999998888876667778777777666666555666764
No 43
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.85 E-value=0.0002 Score=45.14 Aligned_cols=64 Identities=14% Similarity=0.005 Sum_probs=51.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
.|.+|.+.|+++.++......++.++.+.+...+.+ .++...+++.++..++..+..++..+|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 132 ATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999988888888999998888877 5667778888877777666666667764
No 44
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.83 E-value=0.0001 Score=46.69 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=52.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
.|.+|.+.|.++.++......++..+.+.+...+.+ .++.+.+++.++..++..+..++..||++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 127 QESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 477899999999998888878888888888777777 567778888888877776666667788753
No 45
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.79 E-value=4.1e-05 Score=49.18 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=54.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCIN-WTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
.|.+|++.|+++.|+.+..+++++ ++.|.+.+.+.+ .+....+.+..+..+++.++..+.+||.|+
T Consensus 371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 478999999999999998888774 678899999888 566677777888788888888888888663
No 46
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.78 E-value=3.4e-05 Score=47.34 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=51.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|.+|.+.|+++.++......++..+.+.+...+.+ .++.+.|++.++..++..++...++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 111 ADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred cccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 578999999999999999999999999999888875 5667788888888888777555555543
No 47
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00057 Score=44.94 Aligned_cols=74 Identities=9% Similarity=0.010 Sum_probs=58.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhccc----CCCCCHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPE----TKGRTLEEIQA 75 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e----t~~~~~~~~~~ 75 (83)
+...|++.|++..++.+....++.++.-.+.+.+.+ .+|...|.++++++++..++.+.+..| ++..+.+|.+.
T Consensus 154 ~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~ 233 (466)
T KOG2532|consen 154 AKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKY 233 (466)
T ss_pred eeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHH
Confidence 345799999999999999999999999989898988 588899999999999988876555443 34445555544
No 48
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.74 E-value=0.00012 Score=46.53 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=33.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.|.+|++.|++++|+....+++++.+.|.+...+.+
T Consensus 347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999998887
No 49
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.73 E-value=0.00015 Score=47.44 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=52.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
|.+.|+++.++......++..+.|.+...+.+ .++++.|++...+.++..++..+++|+..
T Consensus 125 ~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 125 EEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 67999999999999999999999999998888 67888888888777777777777777753
No 50
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.73 E-value=0.00032 Score=43.16 Aligned_cols=56 Identities=13% Similarity=-0.076 Sum_probs=44.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 57 (83)
+|++|.+.|+++.++......++..+.+.+...+.+ .++.+.+++.++..++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 118 PDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999888877 56666676665555544443
No 51
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.70 E-value=0.00029 Score=44.04 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS--KTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
.|.+|.+.|+++.++......++..+.+.+...+.+ .+ +.+.+.+. ++..+..++.....||++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~-~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 126 IESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFIS-ILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHH-HHHHHHHHHHHHhCCCCh
Confidence 578999999999999999999999999988887776 33 45555543 333333444455677754
No 52
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.68 E-value=0.00077 Score=44.34 Aligned_cols=64 Identities=11% Similarity=-0.052 Sum_probs=46.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-------------------WSKTGTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (83)
++.||.+.|+++.|+....+.++..+.+++.|.+.. .+....++++..+.++..++.++.+
T Consensus 153 s~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~ 232 (462)
T PRK15034 153 SFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGM 232 (462)
T ss_pred HHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567999999999999987788888888877776552 1133445677777777777777766
Q ss_pred ccC
Q 034783 63 PET 65 (83)
Q Consensus 63 ~et 65 (83)
++.
T Consensus 233 ~~~ 235 (462)
T PRK15034 233 NDI 235 (462)
T ss_pred CCc
Confidence 654
No 53
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.66 E-value=0.00019 Score=44.34 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=45.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~ 58 (83)
+|.+|++.|+++.|+...+..+++.+.+.+.+.+.+ .+ ....+.+.++..++..+..
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 337 SDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999988 44 4556666666655555443
No 54
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.65 E-value=0.00034 Score=44.36 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=44.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTF---HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~---~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|.+|.+.|++++++......++.++.+.+. ..... .++.+.|++.+.. .+..++..+++||+
T Consensus 153 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~-~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP-AGLLFLGLFFLPES 219 (481)
T ss_pred HccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HHHHHHHHhcCCCC
Confidence 6899999999999999988889988888876 33223 4556666664443 34444455667775
No 55
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.65 E-value=0.0002 Score=45.20 Aligned_cols=37 Identities=5% Similarity=0.091 Sum_probs=34.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW 38 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~ 38 (83)
+|.+|++.|+++.|+.+..+.++.++.+.+.+.+.+.
T Consensus 334 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~ 370 (406)
T PRK11551 334 PLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL 370 (406)
T ss_pred HHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence 5789999999999999999999999999999998873
No 56
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.61 E-value=0.001 Score=42.89 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=44.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM--------E-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
++|.+|.+.|++++++......++..+.+.+...+. . .++++.|++.++..++.. +..+++||+.
T Consensus 145 i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~ 218 (479)
T PRK10077 145 IAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPETP 218 (479)
T ss_pred HHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCCc
Confidence 369999999999999988777777777665543332 1 356667777666665554 3456688864
No 57
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.59 E-value=0.0011 Score=45.98 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=43.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh------------hHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS------------KTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
++|++|.+.|++.+++......++.++.+.+...+.. .+ .|..++.+.++..+..++..+++||+
T Consensus 280 isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999888888888777766544443 11 13333444444555556667788997
No 58
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.58 E-value=0.00048 Score=44.52 Aligned_cols=65 Identities=11% Similarity=-0.068 Sum_probs=44.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTF-HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|++.|++++|+.+....+++.+.+.+. ..+.. .++.+.|++.++..++..++..+++||+.
T Consensus 146 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 146 VHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 4678999999999998777777764433332 22222 46667787777777777677777777753
No 59
>PRK12382 putative transporter; Provisional
Probab=97.54 E-value=0.0007 Score=42.71 Aligned_cols=61 Identities=8% Similarity=-0.004 Sum_probs=49.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (83)
.|.+|++.|+++.|+.+....+++.+.+.+...+.+ .++...+.+.+...++..+..++..
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 467899999999999999999999999999999888 5666777777776666665554433
No 60
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.53 E-value=0.00096 Score=42.15 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=49.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 69 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 69 (83)
.|.+|.+.|+++.++.+....++..+.+.+...+.+ .+....+.+.++..+++.+..+ .+++.++++
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 395 (399)
T PRK05122 328 VKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW-LLYRRAPRA 395 (399)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hhccccccc
Confidence 367899999999999999999998888888888877 5556667776666666555544 455544443
No 61
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.52 E-value=0.00052 Score=42.63 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=42.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHH-HHHHHHHHHHHHHHHHhccc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW-----------SKTGTF-SIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~e 64 (83)
+|.+|.+.|+++.++......++..+.+.+.+.+... ++.+.+ ...+.+..+..++.+...+|
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 5788999999999999888888888887777766641 345555 33344444444444444554
No 62
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.51 E-value=0.0013 Score=41.77 Aligned_cols=65 Identities=6% Similarity=-0.075 Sum_probs=50.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRTL 70 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 70 (83)
|++.|++..++.+..+.++..+.|.+...+.+ .+ ....+.+..+.+++..+..+...|||+++..
T Consensus 323 ~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 323 QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 56789999999999999999999999999998 33 3455555566666666666777899887754
No 63
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.50 E-value=0.00059 Score=44.26 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=43.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMME-------------WSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
.|.+|.+.|+++.|+.+..+++ +.++.+.+...+.+ .++...|.++.+..+++.+...
T Consensus 375 ~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 375 VGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999887 66899999888887 2345566666555555544433
No 64
>TIGR00898 2A0119 cation transport protein.
Probab=97.48 E-value=0.003 Score=41.19 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=43.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
++|.+|.+.|+.+.++......++.++.+.+...+. ++.+.+++.++..++..+.. +++||+
T Consensus 205 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 205 NTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred hheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 469999999999999987766777666666543333 36667777776666555544 678885
No 65
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.48 E-value=0.00041 Score=45.92 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=42.3
Q ss_pred CCCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034783 2 AEIFPIN--MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA 53 (83)
Q Consensus 2 ~Elfp~~--~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 53 (83)
+|+||++ .|+++.++.+...++++++.|.+.+.+.+ .++.+.|.+.++..++
T Consensus 126 ~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 126 GELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 6899986 79999999999999999999999999987 6666677665543333
No 66
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.47 E-value=0.0004 Score=44.13 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=37.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIF 47 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 47 (83)
+|.+|.+.|+++.++......++.++.+.+.+.+.+ .++.+.|++.
T Consensus 132 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 588999999999999988888899988888777776 5566666553
No 67
>PRK10504 putative transporter; Provisional
Probab=97.46 E-value=0.00097 Score=43.08 Aligned_cols=64 Identities=17% Similarity=0.020 Sum_probs=51.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
.|.+|.+.|+++.++......++..+.+.+...+.+ .++.+.|.+......+..+......|+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 124 MKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 477899999999999998889999999999888887 6667778777776666666666666654
No 68
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0011 Score=43.92 Aligned_cols=65 Identities=18% Similarity=0.077 Sum_probs=44.3
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITF-TFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+.|+-|.+.||....+......++..+... ..|.+.. ...|.....+..+..+.......++||+
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PES 207 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPES 207 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 479999999999999888888888777744 4666665 3333344444444445555566778885
No 69
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.45 E-value=0.001 Score=43.66 Aligned_cols=64 Identities=9% Similarity=0.189 Sum_probs=50.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|+++.++......++..+.+.+...+.+ .++...|++.++...+..+.. ++.||+.
T Consensus 133 ~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~ 198 (491)
T PRK11010 133 TDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEPT 198 (491)
T ss_pred HHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence 588999999999999999999999999988888877 367778888777766654443 4477763
No 70
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.44 E-value=0.0015 Score=41.28 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=49.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
.|.++.+.|+.+.++......++..+.+.+...+.+ .++...|++.++..++..+...++.||++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 122 RDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 356777888888888888888888888888777776 566777877777666666666667788643
No 71
>PRK15075 citrate-proton symporter; Provisional
Probab=97.43 E-value=0.0005 Score=44.18 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=30.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~ 37 (83)
+|.+|++.|+++.++.+.++.. ++.+.|.+.+.+.+
T Consensus 357 ~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 357 TEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5899999999999998776665 58888888888887
No 72
>PRK11043 putative transporter; Provisional
Probab=97.40 E-value=0.0028 Score=40.15 Aligned_cols=62 Identities=5% Similarity=0.027 Sum_probs=45.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
+|.+|.+.|....+.......++..+.+.+...+.+ .++...+.+.+...++..+..++ ++|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 182 (401)
T PRK11043 120 IDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR-LKP 182 (401)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 577888888888888877778888888888888877 56667777777776666555443 444
No 73
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.40 E-value=5.5e-05 Score=46.71 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=47.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITF-TFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|.+|.+.|+++.++......++..+.+. +...+.. .++.+.|.+.+++..+..++.++..+|+
T Consensus 109 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 109 TKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred HHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 57899999999999999988899888884 4444444 5566677777777776666666666654
No 74
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.39 E-value=0.0015 Score=41.56 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=45.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|++|.+.|+++.|+......++..+.|.+...+.+..++..+.+.+... +...+..+.+||.+
T Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~~ 177 (393)
T PRK11195 114 TELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIY-LLAALFNLFIPRLG 177 (393)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCc
Confidence 68899999999999999999999999999988888754444444333332 22234456677653
No 75
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.0011 Score=43.06 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=53.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---hHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS---KTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
+++.||++.++.++++.- .++++..+..++.|.+.. .+ +.....++....++.++..++.+.|
T Consensus 129 ~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 129 ASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred ccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467899999999999999 999999999999999988 45 5667788888888878877776654
No 76
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.32 E-value=0.00089 Score=40.83 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=47.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 58 (83)
.|..|++.|++..|+......++..+.+.+.+.+.+ .+....+.+.++..++..++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999987 566667777777776665543
No 77
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.30 E-value=0.0045 Score=40.75 Aligned_cols=62 Identities=21% Similarity=0.153 Sum_probs=48.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
++|+++++.|+.+.++ ....|.++.+.+....++.. +|++.+++..+...+..++ ++..||.
T Consensus 196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 3699999999999999 88899998888888777776 6667777766666665555 5556675
No 78
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.30 E-value=0.0013 Score=42.63 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=45.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
.|.+|.+.|+++.++......++..+.+.+...+.+ .++.+.|++ +.+.++..++.....||+
T Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~-~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 134 IESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHhCCCc
Confidence 578999999999999999999999999999888877 555555554 333333333334456664
No 79
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.30 E-value=0.00081 Score=42.92 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=48.5
Q ss_pred CCCCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSL-VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|++.|+++.+. .+....++.++.+.+...+.+ .++...|...+++.++..++.++.+++.+
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 467899999888766 355677888899999998888 56677788778777777766666665533
No 80
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.29 E-value=0.00053 Score=42.31 Aligned_cols=52 Identities=8% Similarity=-0.054 Sum_probs=42.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA 53 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 53 (83)
+|.+|++.|+++.|+.+....+++.+.+.+.+.+.+ .++...+.+.+++.++
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 578999999999999999999999999999998887 5555566655554444
No 81
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.26 E-value=0.0047 Score=39.38 Aligned_cols=64 Identities=5% Similarity=-0.084 Sum_probs=47.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|..|.+.|+++.++......++..+.+.+...+.+ .++.+.+.+.+...++. .+..+.+|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 200 (417)
T PRK10489 136 PALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT-LLPLLRLPALP 200 (417)
T ss_pred hhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhCCCCC
Confidence 578899999999999988889999999999888877 45566666555444443 33445666653
No 82
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.24 E-value=0.0023 Score=39.03 Aligned_cols=56 Identities=18% Similarity=0.000 Sum_probs=44.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 57 (83)
+|.+|.+.|+++.++......++..+.+.+...+.+ .++...+.+.+...++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T cd06174 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169 (352)
T ss_pred HHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999888887 44556666655555554433
No 83
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.22 E-value=0.0023 Score=41.88 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=41.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM---------EWSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
++|.+|.+.|++..++......++..+.+.+.+.+. ..+|++.|++.+...++ .++....+||+
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~es 215 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEET 215 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCC
Confidence 368999999999999887666666666655443332 14667777765443333 34444567875
No 84
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.20 E-value=0.003 Score=40.18 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=48.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|+++.++......++..+.+.+...+.+ . ++...|++.++..++..+ ..+..||++
T Consensus 120 ~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~ 185 (402)
T PRK11902 120 TDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPE 185 (402)
T ss_pred HHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCc
Confidence 578999999999999998888888888888777777 3 677778777776655444 345667653
No 85
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.20 E-value=0.0033 Score=39.91 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=43.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
.|++|.+ |+++.++......++..+.+.+.+.+.+ .++...+.+.++..++ ..+..++.||+
T Consensus 331 ~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 393 (393)
T PRK15011 331 QDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-TLFCLLRIKDV 393 (393)
T ss_pred HHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhcCC
Confidence 4778865 9999999888889999999999998888 4554555544444444 44445556654
No 86
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.19 E-value=0.0025 Score=45.48 Aligned_cols=65 Identities=11% Similarity=-0.136 Sum_probs=48.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+++++|.+.|++++|+......++..+++.+...+.. .++...| +..++..+..++.++++|+++
T Consensus 133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 3678999999999999999999999999999999888 4444444 444444444455556666653
No 87
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.18 E-value=0.0038 Score=42.51 Aligned_cols=64 Identities=11% Similarity=-0.060 Sum_probs=46.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------------------hhHHHHHHHHHHHHHHHHH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W----------------------SKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~----------------------~~~~~~~~~~~~~~~~~~~ 57 (83)
+.|.+|.+.|+...++......++..+++.+...+.+ . .||..|.+.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999998888777765 1 1344566666666665544
Q ss_pred HHHhcccC
Q 034783 58 VTFLVPET 65 (83)
Q Consensus 58 ~~~~~~et 65 (83)
++.+|++
T Consensus 277 -l~~~p~~ 283 (633)
T TIGR00805 277 -FFFFPKA 283 (633)
T ss_pred -HHhCccc
Confidence 3455554
No 88
>PRK03699 putative transporter; Provisional
Probab=97.17 E-value=0.0057 Score=38.83 Aligned_cols=57 Identities=4% Similarity=0.009 Sum_probs=43.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 58 (83)
+|.+|.+.|+++.++......+++.+.+.+...+.. .++++.|.+.++..++..++.
T Consensus 121 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 121 THVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998887777888888888777665 467777777776666554443
No 89
>PTZ00207 hypothetical protein; Provisional
Probab=97.16 E-value=0.005 Score=41.77 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=47.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+.|| +.|+++.|+......+++++.+.+...+...++...+++.+++.++..++.+.++++.
T Consensus 147 ~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 147 SVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 4576 7899999999999999998777766666555566778888888888777777666543
No 90
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.13 E-value=0.0028 Score=39.44 Aligned_cols=64 Identities=9% Similarity=-0.115 Sum_probs=45.1
Q ss_pred CCCCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 3 EIFPINMKGLA--GSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 3 Elfp~~~R~~~--~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
|..|.+.|..+ .+.....+.++..+.+.+...+.+ .+++..|++.+...++..+..++++||.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 114 EHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45566666644 466666667788888888777776 56777888888877777676666677743
No 91
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.11 E-value=0.0027 Score=40.85 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=39.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM---------EWSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
++|.+|.+.|++..++.......+.++.+.+.+.+. ..+|+..|++-++..++. .+....+||+.
T Consensus 149 i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~ 222 (432)
T PRK10406 149 MSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS 222 (432)
T ss_pred HHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 368899999999988876665555555555443332 246666776655544433 33344567754
No 92
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.10 E-value=0.0019 Score=41.96 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=46.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (83)
+.+| +.|+++.++......++..+.+.+.+.+.+ .++.+.|++.+++.++..+..++..
T Consensus 135 ~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 135 KYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred HHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 5565 789999999999999999999998888877 6778888888887766555444333
No 93
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.06 E-value=0.0049 Score=39.27 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=45.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
+|+.| +.|+++.|+.+....+++++.|.+...+.+ .+....+++.++..++..+..++
T Consensus 341 ~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 341 PTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 35545 589999999999999999999999999988 66667777777776666555443
No 94
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.04 E-value=0.0055 Score=43.61 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=33.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW 38 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~ 38 (83)
++|++|.+.|++++|+......++.++++.+...+...
T Consensus 128 i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 128 IPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999988877764
No 95
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.04 E-value=0.0006 Score=44.22 Aligned_cols=48 Identities=2% Similarity=-0.092 Sum_probs=38.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWV 49 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~ 49 (83)
+|.+|.+.|++++|+.+....+++.+.+.+.+.+.+ .+....+...+.
T Consensus 392 ~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 392 GGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 578899999999999999999999999999998888 454445544443
No 96
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.01 E-value=0.0034 Score=38.75 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=43.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
|.+| +.|+++.++......++..+.+.+...+.+ .++++.|.+.++..++..+..+++.++
T Consensus 118 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 118 KWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 4455 569999999888877777766655555555 567778888888877777766666654
No 97
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.00 E-value=0.0039 Score=41.13 Aligned_cols=58 Identities=9% Similarity=-0.026 Sum_probs=42.1
Q ss_pred CCCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q 034783 1 MAEIFPINM--KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 1 ~~Elfp~~~--R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
++|.||++. |+.+.++.+...+++.++.+.+.|.+.+ .++++.|++.++ +.+..+..+
T Consensus 130 i~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~ 190 (489)
T PRK10207 130 LSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVY 190 (489)
T ss_pred HHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHH
Confidence 358898874 4778999999999999999999999988 666666666433 333333333
No 98
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.00 E-value=0.0083 Score=38.78 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=44.9
Q ss_pred CCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hhhH------HHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIH-HCINWTITFTFHFMME-WSKT------GTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~-~~~~~~~~~~~~~l~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
.+..|.+.|++++++..... .++..+..++.+.+.+ .+.. ..+.+.+++.++..++.+++.+|+.
T Consensus 327 ~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 327 DRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 46789999999999987765 6788888889999888 3322 2334445555555555556666643
No 99
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.88 E-value=0.00045 Score=44.83 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=42.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVA 56 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~ 56 (83)
.|.+|.+.|+++.++.+....+++++.+.+...+.+ . ++...|.+.+++.++..+
T Consensus 359 ~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 359 MDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 467899999999999999999999999999988877 3 344566665555554444
No 100
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.87 E-value=0.0067 Score=39.54 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=52.8
Q ss_pred CCCCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783 2 AEIFPINMKGLAGSLVIF-IHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~-~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 68 (83)
++.||+|..++...++.+ ...++.++.+.....+.+ .+...+|++.+.+.+...++..+.+++.+..
T Consensus 338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 456899999999999754 557888889999999999 6667789999999998889988888766543
No 101
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=96.85 E-value=2.6e-05 Score=51.02 Aligned_cols=70 Identities=13% Similarity=-0.017 Sum_probs=57.3
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 70 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 70 (83)
++++||...|+++.++.+.+.-+++.++-..-..+.. ..|++.|..-++++++..++..++.+|+..+..
T Consensus 146 IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~ 217 (493)
T KOG1330|consen 146 IADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGAR 217 (493)
T ss_pred hhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccc
Confidence 4789999999999999999998888877776665555 347788999999999999998888888765433
No 102
>PRK15075 citrate-proton symporter; Provisional
Probab=96.83 E-value=0.011 Score=38.12 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=31.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-hhhHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM--------E-WSKTGTFSI 46 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~--------~-~~~~~~~~~ 46 (83)
+|.+|++.|++++++.....+++..+.+.+...+. + .++++.|++
T Consensus 143 ~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~ 196 (434)
T PRK15075 143 AEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLI 196 (434)
T ss_pred HhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHH
Confidence 68999999999999988877776666555544432 2 455556654
No 103
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.83 E-value=0.0069 Score=37.66 Aligned_cols=66 Identities=9% Similarity=-0.065 Sum_probs=46.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhhHHHHHHHHHHHHHHHHH-HHHhccc
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-----------------WSKTGTFSIFWVICAAGVAF-VTFLVPE 64 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~e 64 (83)
++.|.+.+++.+++....+.++..+.|.+...+.. ..+..+|++.+.+..+..+. ....+||
T Consensus 37 ~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~ 116 (310)
T TIGR01272 37 ILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPE 116 (310)
T ss_pred HHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 45688889999999999999999999999887773 13445666565554444443 3344576
Q ss_pred CCCC
Q 034783 65 TKGR 68 (83)
Q Consensus 65 t~~~ 68 (83)
.+.+
T Consensus 117 ~~~~ 120 (310)
T TIGR01272 117 LQEA 120 (310)
T ss_pred CCcc
Confidence 5443
No 104
>PRK09952 shikimate transporter; Provisional
Probab=96.79 E-value=0.0074 Score=39.02 Aligned_cols=64 Identities=19% Similarity=0.025 Sum_probs=40.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME---------WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|.+|.+.|+...+.......++..+...+...+.. .+|+..|.+.++..++ .++.....||++
T Consensus 151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~ 223 (438)
T PRK09952 151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA 223 (438)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 589999999999888877766676666555444331 4566677665554333 333334566654
No 105
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.79 E-value=0.013 Score=36.46 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME---------WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
++|.+|.+.|+...++......++.++.+.+...+.. .++...+.+.+...++. .+.....+|+.
T Consensus 121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~ 194 (394)
T TIGR00883 121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEETP 194 (394)
T ss_pred hhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCCh
Confidence 3688999999999999988888888888877655532 23444555444433332 33334456543
No 106
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.0013 Score=42.96 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=51.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 4 IFPINMKGLAGSLVIFIHHCINWTITFTF--HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
.||.+.|++..|+=+..+++++++++.+. ..+.. .++...|++=++++++..++.++.++|+
T Consensus 145 Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 145 WFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999999999999999999988 55555 4677788888888888888888777553
No 107
>PRK03545 putative arabinose transporter; Provisional
Probab=96.77 E-value=0.016 Score=36.63 Aligned_cols=59 Identities=8% Similarity=-0.049 Sum_probs=46.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (83)
|..| +.|++++|+.+....++..+.+.+.+.+.+ .+....+.+.+.+..++.++.+...
T Consensus 321 ~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 321 KLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 4445 688999999999999999999999999998 6667777777777777666665554
No 108
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.75 E-value=0.0033 Score=42.68 Aligned_cols=64 Identities=16% Similarity=0.314 Sum_probs=42.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH-Hhccc
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT-FLVPE 64 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~e 64 (83)
++|+.|.|.|..+.++.....-......+.+...+.. .+|+|.|+++.++..+..+..+ ++.|.
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4799999999988877765444444455555544443 5788888888887777665433 33443
No 109
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.62 E-value=0.0074 Score=38.07 Aligned_cols=62 Identities=8% Similarity=-0.142 Sum_probs=49.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
+..|.+.|++..++......++..+.+.+...+.+ .+....|.+.+++.++..++.++..++
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678889999999999999999999999888887 566778888888877777776655443
No 110
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.61 E-value=0.021 Score=36.51 Aligned_cols=65 Identities=8% Similarity=-0.057 Sum_probs=45.3
Q ss_pred CCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIF-PINMKGLAGSLVIFIHHCINWTITFTFHFMME--------WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elf-p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|+. +++.|++..++......+++.+...+.+.+.. .++...+.+.+++..+..+..++..+|.+
T Consensus 125 ~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 125 PAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 4665 56889999998888888887777776555543 23445667777777777666666777754
No 111
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.58 E-value=0.02 Score=36.90 Aligned_cols=63 Identities=10% Similarity=-0.055 Sum_probs=45.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhhHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME---------------------------WSKTGTFSIFWVICAAG 54 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~~~~~~~~~~ 54 (83)
.++.|.+.|++..++....+.++..+.+.+.+.+.. .++..+|.+.+++.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~ 199 (410)
T TIGR00885 120 LVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV 199 (410)
T ss_pred HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999988777643 13556677777766665
Q ss_pred HHHHH-Hhccc
Q 034783 55 VAFVT-FLVPE 64 (83)
Q Consensus 55 ~~~~~-~~~~e 64 (83)
.++.. ...||
T Consensus 200 ~~~~~~~~~p~ 210 (410)
T TIGR00885 200 ALLIMLTKMPA 210 (410)
T ss_pred HHHHHHhcCCC
Confidence 44433 23565
No 112
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.53 E-value=0.025 Score=35.95 Aligned_cols=54 Identities=11% Similarity=-0.116 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 14 GSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 14 ~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
.++......++.++.+.+...+.+ .++...|...++..++..++.+++.||.++
T Consensus 145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 356666778889999998888876 677788888888777777777777887643
No 113
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.52 E-value=0.029 Score=37.16 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=59.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLE 71 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~ 71 (83)
+++-..+.|....++...+-+.+..+.+.+...+.. .+....|.+-.+..++..++...++||+...+.+
T Consensus 138 adis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 138 ADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 566778899999999999999999999999888887 6677788888888888888999999998665544
No 114
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.52 E-value=0.0023 Score=42.49 Aligned_cols=64 Identities=16% Similarity=-0.019 Sum_probs=54.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
.|..+.|++.+++-+..+.++++++.++...+.. .+|.+.|.+-++++++..+++++++|+...
T Consensus 162 wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 162 WYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 4678899999999999999999999999877532 578889999999999999999999987533
No 115
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.49 E-value=0.018 Score=35.88 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=41.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 57 (83)
.|..|.+ |+++.++.+....++..+.+.+.+.+.+ .+....+.+.++..+++.+.
T Consensus 314 ~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 314 QDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 4667765 5699999999999999999999998887 55556666666655554444
No 116
>PRK12382 putative transporter; Provisional
Probab=96.47 E-value=0.021 Score=36.10 Aligned_cols=44 Identities=5% Similarity=-0.266 Sum_probs=33.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFS 45 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 45 (83)
.|.+|.+.|++++|+......++..+.+.+.+.+.+ .++...+.
T Consensus 138 ~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~ 182 (392)
T PRK12382 138 LGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALAL 182 (392)
T ss_pred HhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 478899999999999888888888888888777766 44443333
No 117
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.44 E-value=0.017 Score=38.28 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=50.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 68 (83)
+|+.|....+.-.|+....+...+++.|+++..+.+ .+ .+..+....++.+++.++. +.++..|++
T Consensus 406 ~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 406 SRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 688999999999999999999999999999999998 33 4555655555555554443 556655554
No 118
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.41 E-value=0.026 Score=37.36 Aligned_cols=52 Identities=6% Similarity=-0.034 Sum_probs=38.6
Q ss_pred CCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034783 2 AEIFPINM--KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA 53 (83)
Q Consensus 2 ~Elfp~~~--R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 53 (83)
+|+||.+. |..+.++.+...+++.++.+.+.+.+.+ .++++.|.+.++...+
T Consensus 138 ~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 138 STCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 57787543 4557888888999999999999999988 6677777766543333
No 119
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.41 E-value=0.028 Score=37.66 Aligned_cols=41 Identities=5% Similarity=-0.125 Sum_probs=34.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTG 42 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~ 42 (83)
...+|.+.|+++.|+......++.++++.+.+.+...++..
T Consensus 140 ~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~ 180 (511)
T TIGR00806 140 FSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWIS 180 (511)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 35689999999999999999999999999988855555443
No 120
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.37 E-value=0.0046 Score=39.67 Aligned_cols=46 Identities=4% Similarity=0.003 Sum_probs=37.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIF 47 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~ 47 (83)
.|.+|++.|+++.|+.+..+++++++.|.+.+.+.+ .+ +...+++.
T Consensus 359 ~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~ 406 (412)
T TIGR02332 359 DQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFV 406 (412)
T ss_pred ccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHH
Confidence 478999999999999999999999999999988888 33 44444443
No 121
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.36 E-value=0.021 Score=36.37 Aligned_cols=35 Identities=3% Similarity=-0.264 Sum_probs=26.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCIN-WTITFTFHFMME 37 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~-~~~~~~~~~l~~ 37 (83)
+.+|++.|++++|+......++. .+.+.+...+.+
T Consensus 132 ~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 132 YNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56799999999999988887775 456666555554
No 122
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.34 E-value=0.0036 Score=40.70 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=32.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
++|+++.+.|+.++|.......++-++.|++-.++..
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 4799999999999999988888888888888777665
No 123
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.30 E-value=0.045 Score=36.75 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=47.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH-HhcccCCC
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT-FLVPETKG 67 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~et~~ 67 (83)
+..|.+.|++..|+..++...+..++..+.+.+.+ .+....+.+.++..++..++.. ..+++.+.
T Consensus 334 ~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 334 LSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 35699999999999999999999999999999988 5666666655555444444433 33555444
No 124
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=96.29 E-value=0.0019 Score=41.97 Aligned_cols=63 Identities=10% Similarity=-0.109 Sum_probs=44.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW----SKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
+|.+|.+.|++++|+......++.++.+.+...+... ++...|.+.+++.++..+..+++.++
T Consensus 148 ~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 148 TRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred HHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 5789999999999999888888888888876655542 24455666666666665555555443
No 125
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.23 E-value=0.026 Score=37.10 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=45.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP 63 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (83)
+|..|.+.|++.+|+......+++.+.+.+.....+ .+..+.|...++..++..++.++..|
T Consensus 407 ~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 407 TKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999888999998888776655 44556666666666666665554443
No 126
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.21 E-value=0.026 Score=36.31 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=47.9
Q ss_pred CCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 1 MAEIFP-INMKGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 1 ~~Elfp-~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
.+|+.+ ++.|.+..+.....+.+++.+...+.+.+.+ . +......+++++..+..++..+..+|
T Consensus 128 ~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 128 IPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred CccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 367776 4689999999999999988888888777775 1 23455666777777777777777788
No 127
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.18 E-value=0.052 Score=34.61 Aligned_cols=51 Identities=8% Similarity=-0.112 Sum_probs=37.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW--SKTGTFSIFWVICAA 53 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~ 53 (83)
.+.+| +.|++++++......++..+.+.+.+.+.+. ++...+.+++...++
T Consensus 123 ~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 123 KRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred HHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35676 7799999999888888888988888888773 455556555554443
No 128
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.12 E-value=0.029 Score=36.88 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=40.5
Q ss_pred CCCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 034783 2 AEIFPINM---KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAG 54 (83)
Q Consensus 2 ~Elfp~~~---R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 54 (83)
+|.+|.+. |+++.++.+...+++.++.+.+.+.+.+ .++...|.+.++..++.
T Consensus 128 a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 128 GKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred HHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 46677654 8889999999999999999999998887 56666776655444433
No 129
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=95.99 E-value=0.05 Score=36.05 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=41.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW---SKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
++|+-|++.|+.-.++......++..+. ++....... +|+..+.+..+.+++..+. .+++||+
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 4799999999999998877766554444 444444432 4555566555555555555 7778875
No 130
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=95.95 E-value=0.042 Score=34.75 Aligned_cols=49 Identities=6% Similarity=-0.261 Sum_probs=36.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVI 50 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 50 (83)
.|.+|.+.|+++.++......++..+.+.+...+.+ .++...+++....
T Consensus 138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~ 187 (399)
T PRK05122 138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL 187 (399)
T ss_pred HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 477899999999998877778888888888777776 4555455444443
No 131
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.93 E-value=0.12 Score=32.99 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.+.++...|+.+....++..+.+.+.+.+.+
T Consensus 349 ~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 349 VRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888899999999999999999888876
No 132
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.87 E-value=0.12 Score=32.70 Aligned_cols=62 Identities=11% Similarity=-0.006 Sum_probs=39.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
|..+.+.++...+.......++..+.+.....+.+ .++...|++.++..++..+..++..++
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 124 EHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455555555555555556777777766666666 577778888888777666665444444
No 133
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=95.87 E-value=0.014 Score=36.58 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=34.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+|.+|++.|+++.|+.+.+..++..+.+.+.+.+.+
T Consensus 354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999988
No 134
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=95.84 E-value=0.095 Score=32.69 Aligned_cols=49 Identities=10% Similarity=-0.032 Sum_probs=34.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW-S--KTGTFSIFWVIC 51 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~~~~~ 51 (83)
.|.+| +.|+++.++......++..+.+.+.+.+.+. + ++..|.+.++..
T Consensus 113 ~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 113 KRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA 164 (355)
T ss_pred HHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 35565 5799999999888889999888887777662 2 444555554443
No 135
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=95.84 E-value=0.049 Score=39.00 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=38.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW--SKTGTFSIFWVICAAGVAFVTFLVP 63 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (83)
.|..|.+.|++++|+.+.+..++.++.+.+...+... .....+.+.+.+.++..++.....|
T Consensus 348 ~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1146)
T PRK08633 348 QFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP 411 (1146)
T ss_pred hhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4678999999999999999988887766665544432 2223344444444443333333333
No 136
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.72 E-value=0.1 Score=33.03 Aligned_cols=56 Identities=7% Similarity=-0.060 Sum_probs=39.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 57 (83)
.|..|.+.++...+.......++..+.|.+...+.+ .+..+.|.+.+.+.++..+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 311 CEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 466777777777777777778899999999998888 55566666666655544333
No 137
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=95.71 E-value=0.0072 Score=37.53 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=29.8
Q ss_pred CCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFI-HHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~-~~~~~~~~~~~~~~l~~ 37 (83)
+|++|++.|+++.++.+.. +.++..+.|.+...+.+
T Consensus 338 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 338 PELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 5889999999999986544 56778899999888888
No 138
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=95.67 E-value=0.025 Score=34.56 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=40.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783 4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (83)
-|| +.|+++.++......+++++...++..+...+....+.+.+....+..+...+++
T Consensus 124 NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v 181 (250)
T PF06813_consen 124 NFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV 181 (250)
T ss_pred hCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence 477 4799999999999999999999988877775434444445554444444444444
No 139
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=95.63 E-value=0.068 Score=35.17 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=31.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+++.|.+.+++..++...+..++..+.+.+...+.+
T Consensus 377 ~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 377 ARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred HHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999987777766
No 140
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=95.61 E-value=0.0094 Score=36.83 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=32.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+|.+|++.|+++.|+.+.+..+++.+.+.+.+.+.+
T Consensus 336 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 336 SELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred HHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 578899999999999999999999999999888887
No 141
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=95.59 E-value=0.041 Score=35.21 Aligned_cols=37 Identities=5% Similarity=-0.145 Sum_probs=33.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW 38 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~ 38 (83)
.|..|.+.|+++.|+.+....++..+.+.+...+.+.
T Consensus 323 ~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 323 ASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 4678999999999999999999999999999999883
No 142
>PRK11462 putative transporter; Provisional
Probab=95.51 E-value=0.22 Score=32.67 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=40.5
Q ss_pred CCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-------hHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIFP-INMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-------KTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elfp-~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|+-+ .+.|.+..++-...+.++..+.+.+.+.+.. .+ +.....+++++.+++...++...+|.
T Consensus 135 ~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 135 GVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 45554 7899999999999998888888777655554 22 22334455555555544555445553
No 143
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.0093 Score=39.05 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=56.5
Q ss_pred CCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783 2 AEIFPINM-KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 69 (83)
Q Consensus 2 ~Elfp~~~-R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 69 (83)
++.||.+. |++++|+.-....++..++|-.-..+.+ .+...+|.+.++++++-..+..+.++.++.++
T Consensus 185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 35677666 6999999998888999999998888888 78889999999999998888877777666555
No 144
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=95.37 E-value=0.052 Score=36.35 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=50.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP 63 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (83)
+..|.|+.+.+++....-++.++.+.+...+.+ .++++.+++++.+.+...+.....-|
T Consensus 163 YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 163 YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457899999999999999999999998888888 78999999999998777777666656
No 145
>PRK11010 ampG muropeptide transporter; Validated
Probab=95.35 E-value=0.19 Score=33.21 Aligned_cols=62 Identities=6% Similarity=0.034 Sum_probs=44.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
++.|.+.+++..++.+....++..+.+.+.+.+.+ .++...|.+.++..+.+.+.. ..++++
T Consensus 343 ~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~-~~~~~~ 405 (491)
T PRK11010 343 TLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLL-LVCRQT 405 (491)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 56788889999999999998888888888888888 555555665555555554444 344443
No 146
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.23 E-value=0.073 Score=34.08 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 10 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
|+...+.......++..+.+.+.+.+.+.++...|+..++..++..+..++..+|
T Consensus 139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 139 SGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred ccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence 3445566677777888888888887777666677777666666655554443443
No 147
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.21 E-value=0.24 Score=33.04 Aligned_cols=66 Identities=14% Similarity=-0.011 Sum_probs=42.8
Q ss_pred CCCCCCcchHH--HHHHHHHHHHHHHHHHHHHHHHHHH--H--------------hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783 1 MAEIFPINMKG--LAGSLVIFIHHCINWTITFTFHFMM--E--------------WSKTGTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 1 ~~Elfp~~~R~--~~~s~~~~~~~~~~~~~~~~~~~l~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (83)
++|+.|.+.|. .+.++.+....+++.+++.+-.... . .+....|.+-+++.++..++..+..
T Consensus 139 iaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v 218 (477)
T TIGR01301 139 LADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV 218 (477)
T ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence 47899988774 5777766777777777766543321 1 1334456666666666667777778
Q ss_pred ccCC
Q 034783 63 PETK 66 (83)
Q Consensus 63 ~et~ 66 (83)
+|..
T Consensus 219 ~E~~ 222 (477)
T TIGR01301 219 KENP 222 (477)
T ss_pred eccC
Confidence 8854
No 148
>PRK10504 putative transporter; Provisional
Probab=95.20 E-value=0.066 Score=34.72 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=31.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.+..|.+.|+.+.|+.+....++..+.+.+...+.+
T Consensus 379 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 379 LKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999998888776
No 149
>PRK10054 putative transporter; Provisional
Probab=95.10 E-value=0.11 Score=33.30 Aligned_cols=56 Identities=14% Similarity=-0.011 Sum_probs=38.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
+.-|++.|++..+.. ..++++..+.|.+...+.+ .+....|.+.+...++..++..
T Consensus 325 ~~~p~~~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 325 HIAPPGMKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HhCCcccceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 556888998888754 4678899999999999998 4444555555555444444443
No 150
>PRK03633 putative MFS family transporter protein; Provisional
Probab=94.91 E-value=0.16 Score=32.10 Aligned_cols=35 Identities=3% Similarity=-0.254 Sum_probs=29.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+..|.+.|++++++......++..+.+.+...+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 121 CSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45678899999999999889999999988877765
No 151
>PRK09669 putative symporter YagG; Provisional
Probab=94.76 E-value=0.35 Score=31.32 Aligned_cols=64 Identities=6% Similarity=-0.047 Sum_probs=40.1
Q ss_pred CCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIF-PINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elf-p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|+. +++.|.+..++......+++.+.+.+.+.+.. . ++...+.+++++..+..+.+++..+|.
T Consensus 135 ~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 135 GAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 4665 55789988888888888888887776554443 1 122345555656555555555555553
No 152
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=94.72 E-value=0.2 Score=33.79 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=42.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA 53 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 53 (83)
++|+.|.+.-..+.++.....++...++|.+...+.. .+....|.+.++..++
T Consensus 128 ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~ 181 (524)
T PF05977_consen 128 IPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI 181 (524)
T ss_pred HHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999998887 5655666665544333
No 153
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.70 E-value=0.037 Score=35.89 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=38.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-hHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW---S-KTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~ 58 (83)
|..| +.++.+.++.+..+.+++++.+.+.+.+.+. + +...|.+.++..+++.++.
T Consensus 388 ~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 388 DLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred hcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 4444 4889999999999999999999888877752 2 3445666665555554443
No 154
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=94.58 E-value=0.22 Score=31.71 Aligned_cols=59 Identities=7% Similarity=-0.197 Sum_probs=37.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMMEW-SKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
+++.|++..++.+..+.++..+.+.+...+.+. +.....+...+..++..++..+++++
T Consensus 338 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK15402 338 SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD 397 (406)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 347899999999999999999999888888773 33333333333333333344344443
No 155
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=94.43 E-value=0.16 Score=36.70 Aligned_cols=36 Identities=3% Similarity=-0.126 Sum_probs=31.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.+..|.+.|++++|+.+..+.++..+.+.+...+..
T Consensus 360 ~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 360 QAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988877765
No 156
>TIGR00895 2A0115 benzoate transport.
Probab=94.03 E-value=0.091 Score=32.74 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=28.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFM 35 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l 35 (83)
+|.+|++.|+++.|+...+..++.++.+.+...+
T Consensus 364 ~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 364 ALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 5788999999999998888888888888776543
No 157
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=93.97 E-value=0.49 Score=29.53 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 58 (83)
.|.+| +.|+++.++.+...+..+.+.+.+.. +.+....+.+.++.....+..++.
T Consensus 326 ~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 380 (385)
T TIGR00710 326 LEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSCLVLAVVSVLA 380 (385)
T ss_pred hccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHHHHHHHHHHHH
Confidence 35566 57899999988888776666666655 333333344444444444444433
No 158
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=93.91 E-value=0.63 Score=29.52 Aligned_cols=54 Identities=19% Similarity=0.053 Sum_probs=39.4
Q ss_pred CCCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIF-IHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 57 (83)
+. |.+.|++++++.+. ...++.++.+.+.+.+.+......|+..+.+.+++.++
T Consensus 320 ~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 320 AQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFL 374 (382)
T ss_pred hC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45 88899999998764 45678888999999998843456677777766655433
No 159
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=93.90 E-value=0.046 Score=35.87 Aligned_cols=52 Identities=15% Similarity=0.006 Sum_probs=34.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 58 (83)
+++.|+++.++....+.+++++.+.++. ... .++...|.+.+++.+++.+..
T Consensus 377 ~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 377 SRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred ChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence 3478999999988877778877777653 111 234566777776666665554
No 160
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=93.79 E-value=0.11 Score=31.96 Aligned_cols=36 Identities=8% Similarity=-0.080 Sum_probs=29.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.|..|++.|+++.|+.+....++..+.+.+.+.+.+
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 327 QRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999988888888888888777765
No 161
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=93.77 E-value=0.25 Score=31.41 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=43.1
Q ss_pred CCCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSL-VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 3 Elfp~~~R~~~~s~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
+.+|.+.|+++.+. .+....+++++.+.+...+.+ .+....|.+.+++..+..+...+
T Consensus 334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766 456778899999999999988 56667777777777776665543
No 162
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=93.71 E-value=0.64 Score=29.47 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAG 54 (83)
Q Consensus 7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 54 (83)
.+.+++.+++.+....++..+.+.+...+.+ .+....|...+++.++.
T Consensus 335 ~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 335 GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999988 45445555554444443
No 163
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.68 E-value=0.32 Score=30.85 Aligned_cols=57 Identities=12% Similarity=-0.026 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 8 NMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 8 ~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+.|+++.+.....+.++.++.+.+...+.+ .++...|+..++..++. ++..+..||.
T Consensus 124 ~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~~ 181 (382)
T PRK11128 124 KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQLLRPTI 181 (382)
T ss_pred hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHHccCCC
Confidence 346677777888888999999999888887 57777776665543333 3333445554
No 164
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=93.30 E-value=0.47 Score=31.61 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783 10 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (83)
-+...|+....+.+++++.|.++....+ ......++.+.+..+++.++.|++.
T Consensus 400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455777778888888999988887776 3345567788888888888777654
No 165
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.29 E-value=0.35 Score=31.67 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE 64 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 64 (83)
|.+ |+.-.|....+..+++.+...+...+.+ .+....|.+.+.+..+..+...+..+|
T Consensus 119 p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 119 PES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 455 8888899888888899988888877777 555666777777777766666666666
No 166
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=93.16 E-value=0.56 Score=29.81 Aligned_cols=53 Identities=6% Similarity=-0.139 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 13 AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 13 ~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
..+.....+.++.++.+.+...+.+.++...|++.+...++..++.+...+|+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566666677778888887766666667778777777776665554444543
No 167
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=92.96 E-value=0.46 Score=30.17 Aligned_cols=44 Identities=14% Similarity=0.028 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 034783 7 INMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVI 50 (83)
Q Consensus 7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 50 (83)
.+.|++..+.....+.++.++.+.+...+.+ .++...|.+....
T Consensus 123 ~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 123 QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 3567788888888888999999998888887 5666666665544
No 168
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=92.92 E-value=0.00096 Score=42.79 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=39.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS--KTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+.|..|++.|+...++......++..+...+...... .+ .|.....+..+..+..++...++||+
T Consensus 127 ~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 127 ISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4699999999998888877666666666555443322 11 23344444444443444555778886
No 169
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=92.91 E-value=1.6 Score=29.29 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
.++.|.+..|.-.....+++.+...+.+++.. . +......+++++.++..+++++-.+|.
T Consensus 143 d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 143 DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46789999999999999999999999988887 1 223345556666666666676666663
No 170
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=92.91 E-value=0.83 Score=28.60 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=13.3
Q ss_pred CCCCcchHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHH 22 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~ 22 (83)
|..| +.|+++.++......
T Consensus 314 ~~~~-~~~g~~~~~~~~~~~ 332 (377)
T PRK11102 314 DEFP-HMAGTASSLAGTLRF 332 (377)
T ss_pred cccc-ccchHHHHHHHHHHH
Confidence 4555 788888888766544
No 171
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=92.52 E-value=0.064 Score=35.36 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=46.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783 2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV 62 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (83)
.|+.|.+--+++.|+...++.+ ++.......+.+.+ .++.+.|.++.+.++++.++.....
T Consensus 372 ~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 372 AEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999988 77777777777777 5777777777777666666544433
No 172
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=92.03 E-value=1.9 Score=28.38 Aligned_cols=67 Identities=22% Similarity=0.119 Sum_probs=43.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--------hHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS--------KTGTFSIFWVICAAGVAFVTFLVPETKGRT 69 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 69 (83)
+|+-|...-++..++-..+.+++..+...+.-.+.+ .+ .+....+..+.. +..+....++|+.++.+
T Consensus 344 a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~-ll~l~ll~lLp~~~~~~ 419 (433)
T PF03092_consen 344 ARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQ-LLPLPLLFLLPPQKRIT 419 (433)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH-HHHHHHHHHcCCCchhh
Confidence 578899999999999999999998888888776665 22 223333333333 33344445677655443
No 173
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=91.56 E-value=1.2 Score=29.72 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-------hHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 11 GLAGSLVIFIHHCINWTITFTFHFMME--WS-------KTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 11 ~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
++..+.+...+.+++.+...+...+.. .. ....+.+.++..++..+-..+++||.++
T Consensus 187 ~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 187 GRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 888888888888888887776555543 11 2455667777777777777778888754
No 174
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=91.32 E-value=2.7 Score=27.15 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVA 56 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 56 (83)
.++++.|+.....+......+....++...+....+...++++.+...
T Consensus 344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 344 PKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVIVV 391 (413)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 478888888888888888888887777665556666655555444333
No 175
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=91.31 E-value=0.57 Score=31.39 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=30.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.||++.|+.+.+++.+.|-++.++...+-|.+..
T Consensus 168 WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 168 WFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 4899999999999999999999999888777765
No 176
>PRK03699 putative transporter; Provisional
Probab=91.18 E-value=2 Score=27.35 Aligned_cols=50 Identities=2% Similarity=-0.150 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783 8 NMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 8 ~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 57 (83)
+.+++..++......++..+.|.+...+.+ .+....++..+++.++..+.
T Consensus 325 ~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 325 VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 345677788888888999999999999988 56666666666665555444
No 177
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=90.92 E-value=1.3 Score=29.56 Aligned_cols=57 Identities=7% Similarity=-0.006 Sum_probs=35.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH------hhhHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFH-----FMME------WSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~-----~l~~------~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
+.-|.+.|++.+|+-.....+++.+...+.. .... .+....|...++.+++..++.+
T Consensus 409 ~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 409 QLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999887666677777666653 2111 1234556666665554444433
No 178
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=90.68 E-value=2 Score=27.49 Aligned_cols=57 Identities=7% Similarity=-0.061 Sum_probs=38.2
Q ss_pred CCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINM-KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 3 Elfp~~~-R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
|.-|.+. ++++.|+.+....++..+...++..+...+....+.+.+...++...+.+
T Consensus 320 ~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 320 HRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred hhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444544 79999999999999999988888866555555555554444444444433
No 179
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=90.26 E-value=1.4 Score=29.16 Aligned_cols=53 Identities=13% Similarity=-0.073 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 13 AGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 13 ~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
..++.+....++..+.+.+...+.+ .++...|++.++..++. .+...+++|.+
T Consensus 159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 3444555555788888888887777 56777777777776666 44456778864
No 180
>PRK09848 glucuronide transporter; Provisional
Probab=89.55 E-value=4.2 Score=26.45 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.+.++...|+.+....++..+.+.+...+.+
T Consensus 357 ~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 357 VRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888899999998888877765
No 181
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=89.18 E-value=2.6 Score=23.71 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=18.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCIN 25 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~ 25 (83)
.|++|++.|....+......+...
T Consensus 61 kdi~P~~~R~~i~~~~~~~~~~~k 84 (137)
T PF04281_consen 61 KDIFPPSVRNWISSTVSTTSSAVK 84 (137)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999888765554433
No 182
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=89.18 E-value=1.5 Score=27.78 Aligned_cols=31 Identities=3% Similarity=0.030 Sum_probs=16.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+.|.+.|. +.......++..+.+.+.+.+..
T Consensus 318 ~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 318 LGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred hccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544443 33334445566666666666665
No 183
>PRK10091 MFS transport protein AraJ; Provisional
Probab=88.55 E-value=4.6 Score=25.64 Aligned_cols=49 Identities=8% Similarity=-0.197 Sum_probs=29.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHH
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGV 55 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~ 55 (83)
.|.+.++.+ .......+++++.|.+...+.+ . +....+.+.+.++.+..
T Consensus 319 ~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 369 (382)
T PRK10091 319 KGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM 369 (382)
T ss_pred CcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence 344444443 4466678899999999998888 3 34445554444444433
No 184
>PRK11462 putative transporter; Provisional
Probab=88.25 E-value=5.6 Score=26.27 Aligned_cols=31 Identities=10% Similarity=-0.090 Sum_probs=21.4
Q ss_pred cchHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGSLV--IFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 7 ~~~R~~~~s~~--~~~~~~~~~~~~~~~~~l~~ 37 (83)
+..|..|..++ .....++..+.+.+...+++
T Consensus 354 tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 354 NGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666444 47788888888888777765
No 185
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=87.99 E-value=5 Score=28.11 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=39.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 58 (83)
.|.+.|+.+.++......++++++..+++.-.....+.-|+.++.+.++.+++.
T Consensus 594 ~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 647 (654)
T TIGR00926 594 APPNMKSVLQALWLLTVAIGNLIVVVIAEFENFSVQAAEFFLFASLMLVVMAIF 647 (654)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999998888999888888765554444556666666665555543
No 186
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=87.95 E-value=5.9 Score=26.24 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=32.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+|+-|++.|+++.++.+..--++.++...++..+.+
T Consensus 115 ~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 115 ADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred HhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 578899999999999999998898888888888877
No 187
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.77 E-value=3 Score=22.58 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=36.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHH
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME---WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~ 57 (83)
..+.++.+.++-...-.+.+.++...+.++.+ ...+|...++.++.+...++
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 35667788888888888999999999999998 33455555555555544444
No 188
>PRK11043 putative transporter; Provisional
Probab=87.75 E-value=3.2 Score=26.36 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=27.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
|.+| +.|+++.|+.+..+..++...+.+.+.+.+
T Consensus 323 ~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 323 RPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred hhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3445 579999999999888888888888887776
No 189
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=87.41 E-value=3.3 Score=26.40 Aligned_cols=50 Identities=4% Similarity=-0.138 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783 8 NMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 8 ~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 57 (83)
+.|.++....+.+.++++.+.....+++.+ .++...|.+-++..+++.+.
T Consensus 68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 467778888899999999999999999988 56556666655555554443
No 190
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=87.30 E-value=3.2 Score=27.88 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783 11 GLAGSLVIFIHHCINWTITFTFHFMME---WSKTGTFSIFWVICAAGVAFVTFLVPETKG 67 (83)
Q Consensus 11 ~~~~s~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 67 (83)
+.-+|+-+..--+-..+.....+.+.. .+....+.+-++..+++++.+++.+|+++.
T Consensus 417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 666777777777777777776666554 223445666666777777788888998765
No 191
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=87.19 E-value=0.15 Score=34.15 Aligned_cols=48 Identities=8% Similarity=-0.048 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783 10 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 57 (83)
|..+.++.++.-++++++.|.+.+++.+ .++...|...++-...+.+.
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 7778888888889999999999999998 66666666666665555444
No 192
>PRK10429 melibiose:sodium symporter; Provisional
Probab=86.91 E-value=6.8 Score=25.82 Aligned_cols=64 Identities=5% Similarity=-0.142 Sum_probs=36.3
Q ss_pred CCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-------hHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 2 AEIF-PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-------KTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 2 ~Elf-p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+|+- ..+.|.+..++-.....+++.+.+.+.+.+.. .+ ......+++++..+..+.+++..+|.
T Consensus 132 ~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 132 PTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 5666 58899998888777666666666555443332 11 12233444444444444555556664
No 193
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=86.64 E-value=1.1 Score=29.85 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=32.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+++.|.+.-++-.|+.+..++..+++.|+....+.+
T Consensus 367 ~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~ 402 (438)
T COG2270 367 ARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ 402 (438)
T ss_pred HHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 467788888899999999999999999999998888
No 194
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=86.38 E-value=4 Score=27.66 Aligned_cols=60 Identities=7% Similarity=-0.181 Sum_probs=37.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-----------hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME---W-----------SKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
-.+.|.++.+......-++.+++|.+-+.+.. . ....+-|+....+++..++..++++|.
T Consensus 159 ~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 159 TVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred CccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 45677788777766555555555555443332 1 113456777778888888888888874
No 195
>PRK10133 L-fucose transporter; Provisional
Probab=86.06 E-value=7.5 Score=25.48 Aligned_cols=33 Identities=6% Similarity=-0.173 Sum_probs=24.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFM 35 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l 35 (83)
|..|.+.|...+++......++..+.+.+...+
T Consensus 144 ~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666778888888888888888775544
No 196
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=86.00 E-value=2 Score=27.81 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=32.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+-+.|.+.-+++.++...+.+++-++++.+...+.+
T Consensus 378 a~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 378 ASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred hhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 456788899999999999999999999999998888
No 197
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=85.59 E-value=1.9 Score=29.82 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=42.4
Q ss_pred CCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIH-HCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 58 (83)
+...|++.|.++.++..... .++-.+..++-..+.. .+..-.|.++++.+++..++.
T Consensus 485 s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 485 SHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 34679999999999997766 5566667777676766 666778888888777766553
No 198
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=85.27 E-value=4.9 Score=22.80 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCI 24 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~ 24 (83)
.|+||+..|....+......+..
T Consensus 59 kDm~Pp~~R~~i~~~~s~t~s~~ 81 (145)
T TIGR00986 59 KDIVPPTTRGWIYHKYSTTTNFV 81 (145)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999988776555443
No 199
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=84.24 E-value=3.9 Score=21.78 Aligned_cols=34 Identities=12% Similarity=-0.109 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 034783 39 SKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 72 (83)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 72 (83)
++..++++...++++...+.+.+.||++-.+..+
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~ 91 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWAR 91 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3344444444444455555567789988876543
No 200
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=84.18 E-value=1.9 Score=26.40 Aligned_cols=28 Identities=21% Similarity=0.075 Sum_probs=24.8
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTIT 29 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~ 29 (83)
.|..|++.|+++.|+....+.+++.+.|
T Consensus 325 ~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 325 QELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4778999999999999999999888775
No 201
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=83.12 E-value=9.7 Score=24.35 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
+.+|.+. .++....+.++..+...+...+.+ .++...|.+.+.++.+..++. ...+.+
T Consensus 334 ~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~-~~~~~~ 392 (402)
T PRK11902 334 RSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL-WLMRGT 392 (402)
T ss_pred CCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 4455443 344444445555555556677777 566666666666665554443 334433
No 202
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=82.93 E-value=11 Score=25.21 Aligned_cols=58 Identities=9% Similarity=0.085 Sum_probs=37.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM-----------EWSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
+..|.+.++.++++......+++.+...+..... +....+.|...++..++..++.+.
T Consensus 406 ~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 406 ALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999998888888877776653331 111234555566655555555444
No 203
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=81.55 E-value=12 Score=24.82 Aligned_cols=50 Identities=6% Similarity=-0.002 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHH
Q 034783 10 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~ 59 (83)
-+.-.+++..++.+..++.|.++..+.| .+ +......+....++..+..+
T Consensus 331 Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 331 AAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 3444677778889999999999999999 44 33344445555555444443
No 204
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=81.48 E-value=4.6 Score=26.21 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=30.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
|..|++.|+++.++.+....+++.+.+.+...+.+
T Consensus 375 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 375 SGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred hcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55799999999999999999999999888887776
No 205
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=80.04 E-value=5.6 Score=25.77 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=23.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
|....|..++|+.+.+.-..+....-+.|++.+
T Consensus 90 fGl~mryLGvSLG~sI~lGl~~~~GTlippi~~ 122 (344)
T PF06379_consen 90 FGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQ 122 (344)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHc
Confidence 456789999999988886655555555566653
No 206
>PRK03612 spermidine synthase; Provisional
Probab=79.34 E-value=17 Score=24.85 Aligned_cols=46 Identities=9% Similarity=-0.053 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHH
Q 034783 12 LAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 12 ~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~ 57 (83)
...|-.+..+.+|+++++++++.++- .+.....++.+.+.++.+++
T Consensus 145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 44666778888888888888777665 44444555555555444433
No 207
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=79.04 E-value=20 Score=25.31 Aligned_cols=50 Identities=8% Similarity=-0.003 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhHHHHHHHHHHHHHHHHHH
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFV 58 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~ 58 (83)
.|.+..++.+...++++.+.+.+.+++.+ . +++..|.+-++..+++.+..
T Consensus 121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999999998874 2 24556666655555555443
No 208
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=78.28 E-value=17 Score=24.09 Aligned_cols=54 Identities=11% Similarity=-0.082 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
-++.+..+.|+.....+++..+...+-..+.+ .+.....+.-+....+..++..
T Consensus 329 ~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 329 APDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999888888 4444445555555444444443
No 209
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=77.23 E-value=9.6 Score=25.44 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHh
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFL 61 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 61 (83)
.-+...++..+++.++++..|..+....+ .+ ....|+++..+.+++.++.+..
T Consensus 346 ~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 346 ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888889999999999998888 33 5567777888877777765543
No 210
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=74.99 E-value=23 Score=24.00 Aligned_cols=35 Identities=11% Similarity=-0.077 Sum_probs=28.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM 36 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~ 36 (83)
.|++..+.-.+-.++....+.++..+.+.+...+.
T Consensus 155 ndi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 155 NQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778888888889999988888877665
No 211
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=74.70 E-value=24 Score=24.04 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=22.0
Q ss_pred CCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIH-HCINWTITFTFH 33 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~-~~~~~~~~~~~~ 33 (83)
+++-|.+.|+..+|+-.... .+++.+...+..
T Consensus 403 ~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 403 TRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD 435 (493)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999875533 455555555433
No 212
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=74.32 E-value=24 Score=23.94 Aligned_cols=61 Identities=13% Similarity=-0.057 Sum_probs=30.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
|..|...|..-+-+. ..-.++.++...+.-..+. .++++ ++++..+....+....+++||.
T Consensus 192 e~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~-~l~~~~~pl~~~a~f~~w~~ES 253 (528)
T KOG0253|consen 192 EFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY-LLFTSSTPLMFAARFLVWVYES 253 (528)
T ss_pred HhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHhHHHHHHHHHhhcccC
Confidence 556666666655444 2223344444444322333 55444 4444344444445556778885
No 213
>PRK09669 putative symporter YagG; Provisional
Probab=73.84 E-value=22 Score=23.17 Aligned_cols=29 Identities=14% Similarity=0.018 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
..+...|+.+....++.++.+.+...+.+
T Consensus 359 ~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 359 LDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777888999999888887776
No 214
>PRK10429 melibiose:sodium symporter; Provisional
Probab=71.37 E-value=27 Score=23.11 Aligned_cols=32 Identities=6% Similarity=0.021 Sum_probs=22.7
Q ss_pred CcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 6 PINMKGLA--GSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 6 p~~~R~~~--~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
++..|..| .|+...+..++..+.+.+...+.+
T Consensus 359 ~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 359 KLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555 566677788899998888887775
No 215
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=69.37 E-value=25 Score=21.91 Aligned_cols=34 Identities=6% Similarity=0.037 Sum_probs=25.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
=+|++.|.++.=++.....+.-++......++.+
T Consensus 44 ~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~ 77 (254)
T COG0861 44 KLPPKQRKKALFIGLAGALVLRIILLASISWLLT 77 (254)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999888777777777777666666666
No 216
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=69.32 E-value=27 Score=22.42 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVA 56 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 56 (83)
.+++..++......++..+.+.+...+.+ .+....+...+++..+..+
T Consensus 337 ~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 337 QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 34566666667778888999999998888 4444444444444434333
No 217
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=68.32 E-value=26 Score=21.92 Aligned_cols=35 Identities=3% Similarity=-0.004 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHH
Q 034783 10 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFS 45 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 45 (83)
.+++.++. ..+.+++++.|.+...+.+ .+....|+
T Consensus 263 ~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 263 TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 34555553 5667888888888888877 45444444
No 218
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=68.31 E-value=8.1 Score=25.94 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=39.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGSLVIFIHHCINWTITFTFHFMME----WSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
++.-+..+++.+.+..+.+++.|.+...+.. ..|...|++.+++.+++.++..+
T Consensus 388 pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 388 PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 4455667888888888889999988888773 35667777777777777655433
No 219
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=67.78 E-value=34 Score=22.99 Aligned_cols=67 Identities=6% Similarity=-0.151 Sum_probs=43.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHHH-Hh
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW--------------------SKTGTFSIFWVICAAGVAFVT-FL 61 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~~~~~~~~~~~-~~ 61 (83)
.+.|.+..+.-+.+....|.+++++.|.+...+... ....+|...+.+.++..+... ..
T Consensus 131 ~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k 210 (422)
T COG0738 131 LLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSK 210 (422)
T ss_pred HhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 356677777888999999999999999886665541 134456666666666555432 33
Q ss_pred cccCCCCC
Q 034783 62 VPETKGRT 69 (83)
Q Consensus 62 ~~et~~~~ 69 (83)
+|+.+..+
T Consensus 211 ~p~~~~~~ 218 (422)
T COG0738 211 LPDLQVAA 218 (422)
T ss_pred CCcCCccc
Confidence 56654433
No 220
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=66.43 E-value=23 Score=24.60 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=29.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.|.+.|+.++++......+++.+...+......
T Consensus 487 aP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~ 519 (571)
T KOG1237|consen 487 APESMKSVATALWLLTVAVGNYLSSVLVSLVQF 519 (571)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999988766655
No 221
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=65.07 E-value=9.6 Score=25.88 Aligned_cols=35 Identities=11% Similarity=-0.099 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHH
Q 034783 10 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTF 44 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ 44 (83)
|-+..+.........+++.++++..... +.+...|
T Consensus 402 ~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 402 ALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred hHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHH
Confidence 3334444444556666777766655444 3444455
No 222
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=64.74 E-value=33 Score=23.08 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Q 034783 17 VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGV 55 (83)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 55 (83)
.....-++++++|.+...+.+ .+....+......|.+..
T Consensus 363 ~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 334456688899999998888 555555554444444433
No 223
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=64.35 E-value=0.61 Score=31.41 Aligned_cols=53 Identities=6% Similarity=-0.040 Sum_probs=35.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGV 55 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~ 55 (83)
|+.+.+.-+.+.|+...++.++..+++-+...+.+ .+ ....|...++..+++.
T Consensus 415 ~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~ 469 (509)
T KOG2504|consen 415 DLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA 469 (509)
T ss_pred HHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH
Confidence 55666677788888888888888888888887766 33 3344444444444443
No 224
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=62.92 E-value=37 Score=21.58 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=29.3
Q ss_pred CcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034783 6 PINMKGLAGSLVIFI-HHCINWTITFTFHFMMEWSKTGTFSIFWVICAA 53 (83)
Q Consensus 6 p~~~R~~~~s~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 53 (83)
+.+.+++..++.... ..++..+.+.+...+.+......++..+++...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~ 370 (382)
T PRK11128 322 PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALP 370 (382)
T ss_pred CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444567777776544 345667888888888883333455555544443
No 225
>PRK09848 glucuronide transporter; Provisional
Probab=62.38 E-value=41 Score=21.93 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=9.5
Q ss_pred CcchHHHHHHHHHHHHHH
Q 034783 6 PINMKGLAGSLVIFIHHC 23 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~ 23 (83)
+++.|.+..+.-...+.+
T Consensus 140 ~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 140 QPQSRARLGAARGIAASL 157 (448)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 345677765554443333
No 226
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=61.24 E-value=40 Score=21.40 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
|.+| +.++++.++......++.++.+.+...+..
T Consensus 326 ~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 326 EPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred hhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4555 578888888888888888888887665544
No 227
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=58.71 E-value=41 Score=20.72 Aligned_cols=32 Identities=6% Similarity=0.094 Sum_probs=25.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
|+..|..-.+++.......+.+.|++...+..
T Consensus 158 p~~~~p~qaA~asa~afslGg~vPLl~~~fi~ 189 (247)
T KOG4473|consen 158 PAENRPLQAAAASALAFSLGGIVPLLPAAFVK 189 (247)
T ss_pred CCCCchHHHHHHHHHHHHhccHHhhhHHHhhh
Confidence 77788888888888888888888888544444
No 228
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=57.84 E-value=32 Score=19.26 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 034783 39 SKTGTFSIFWVICAAGVAFVTFLVPETKGRTLE 71 (83)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~ 71 (83)
.-.|-..+....+++. ++..+++..+.+++..
T Consensus 38 sdtWQLviNt~ttIit-FlmvfLIQn~q~Rd~~ 69 (132)
T PF04120_consen 38 SDTWQLVINTATTIIT-FLMVFLIQNTQNRDTK 69 (132)
T ss_pred cchHHHHHccHHHHHH-HHHHHHHHhhhhhHHH
Confidence 3345556666666664 3334556666555543
No 229
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.82 E-value=58 Score=22.20 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
++.|..+.++...-..+.+++..+..|....
T Consensus 383 ~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~l 413 (461)
T KOG3098|consen 383 PDDRAQAFSLFKFYQSVASCVAFFFSPYLLL 413 (461)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 6778888888888888888887777776665
No 230
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=56.76 E-value=40 Score=20.00 Aligned_cols=7 Identities=14% Similarity=0.301 Sum_probs=2.9
Q ss_pred cccCCCC
Q 034783 62 VPETKGR 68 (83)
Q Consensus 62 ~~et~~~ 68 (83)
+|..-+.
T Consensus 170 lp~~inp 176 (206)
T PF06570_consen 170 LPPVINP 176 (206)
T ss_pred ccccCCc
Confidence 4444333
No 231
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=56.51 E-value=40 Score=21.05 Aligned_cols=27 Identities=4% Similarity=-0.087 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 11 GLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 11 ~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+...++.+....++.++.|.+...+.+
T Consensus 321 g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 321 AALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443444444444444443333
No 232
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=56.19 E-value=55 Score=21.50 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-h--hhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783 5 FPINMKGLAGSLVI-FIHHCINWTITFTFHFMME-W--SKTGTFSIFWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 5 fp~~~R~~~~s~~~-~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 68 (83)
+|.+..+...+.+. ..|.+..+....+...+.+ . +.-.+|..-..+.+++.++....-+|..++
T Consensus 155 ~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 155 FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 45565556555555 3344455555555555555 2 235567766666666666665555676554
No 233
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.13 E-value=17 Score=23.83 Aligned_cols=26 Identities=4% Similarity=-0.100 Sum_probs=13.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFT 31 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~ 31 (83)
|+..+...+++...+.-++.++.|+.
T Consensus 185 p~~~~~~vl~~~fvl~tlaivLFPLW 210 (372)
T KOG2927|consen 185 PRPLMWQVLGVLFVLVTLAIVLFPLW 210 (372)
T ss_pred CCchhHHHHHHHHHHHHHHHHhcccC
Confidence 55566666666554444444444443
No 234
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=53.67 E-value=57 Score=20.88 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=30.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 69 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 69 (83)
.|.+.|..+..+. +..+...+.|.... ..++....+..+..+.......+++.+..+.+
T Consensus 22 ~p~~~r~~~q~il------G~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d 82 (318)
T PF05145_consen 22 VPRRLRNAGQAIL------GVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLD 82 (318)
T ss_pred CCHHHHHHHHHHH------HHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3555665554433 44444444455444 33445555555555555555555555544444
No 235
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=53.34 E-value=22 Score=15.97 Aligned_cols=11 Identities=9% Similarity=-0.003 Sum_probs=4.9
Q ss_pred HHHHHHhcccC
Q 034783 55 VAFVTFLVPET 65 (83)
Q Consensus 55 ~~~~~~~~~et 65 (83)
+++.|.+-|..
T Consensus 24 gi~~w~~~~~~ 34 (49)
T PF05545_consen 24 GIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHcccc
Confidence 34444454443
No 236
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=53.13 E-value=53 Score=21.39 Aligned_cols=42 Identities=10% Similarity=-0.090 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 23 CINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
++.++.+.+.+.+.....+.++++.++..++..++ .+.+||+
T Consensus 141 lG~~ig~~l~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~ 182 (418)
T TIGR00889 141 IGFIAAMWAVSLLDIELSNIQLYITAGSSALLGVF-ALTLPDI 182 (418)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCC
Confidence 45555566655552222234566666655555444 4567775
No 237
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=52.95 E-value=42 Score=19.14 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhcccC-CCCCHHHH
Q 034783 48 WVICAAGVAFVTFLVPET-KGRTLEEI 73 (83)
Q Consensus 48 ~~~~~~~~~~~~~~~~et-~~~~~~~~ 73 (83)
+...++.+++.....||+ |+++.+|.
T Consensus 102 Ag~~lv~filmvVLiPEpg~QRS~~DN 128 (144)
T PF01350_consen 102 AGVLLVFFILMVVLIPEPGKQRSQQDN 128 (144)
T ss_pred HHHHHHHHHHHHhcccCCCCcCCcccc
Confidence 344445555555667885 56665543
No 238
>PTZ00207 hypothetical protein; Provisional
Probab=52.59 E-value=62 Score=22.74 Aligned_cols=64 Identities=5% Similarity=-0.040 Sum_probs=47.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--h------------hhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTI-TFTFHFMME--W------------SKTGTFSIFWVICAAGVAFVTFLVPETK 66 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~-~~~~~~l~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~et~ 66 (83)
+|+|. |.-++-.-+....+-+++.+. .+++..+.+ . ....+|.+++++++++++.....--+||
T Consensus 478 selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 478 RTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 68888 888888888888888877776 556777765 1 1246799999999999888766555555
No 239
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=51.99 E-value=37 Score=22.63 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=24.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+..|.+.++.+.++.+....+++.+.+.+...+.+
T Consensus 378 ~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 378 AAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred hcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888887777777777777766666654
No 240
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=51.88 E-value=39 Score=18.45 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=5.7
Q ss_pred chHHHHHHHH
Q 034783 8 NMKGLAGSLV 17 (83)
Q Consensus 8 ~~R~~~~s~~ 17 (83)
+.|..|.++.
T Consensus 10 ~~R~~al~li 19 (114)
T PF11023_consen 10 KIRTFALSLI 19 (114)
T ss_pred HHHHHHHHHH
Confidence 4566666554
No 241
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=51.68 E-value=11 Score=25.23 Aligned_cols=34 Identities=6% Similarity=-0.025 Sum_probs=30.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
..|++.|++..|+....+.++-+++|.+...+..
T Consensus 380 ~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 380 YGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 4689999999999999999999999999877775
No 242
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=49.53 E-value=53 Score=19.29 Aligned_cols=10 Identities=10% Similarity=0.013 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 034783 21 HHCINWTITF 30 (83)
Q Consensus 21 ~~~~~~~~~~ 30 (83)
.|+.++.+..
T Consensus 10 ~~~~~~~~~~ 19 (199)
T PF10112_consen 10 RWILGVLIAA 19 (199)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 243
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.00 E-value=21 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=24.3
Q ss_pred HHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 034783 23 CINWTITFT-FHFMMEWSKTGTFSIFWVICAAGVAFVT 59 (83)
Q Consensus 23 ~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 59 (83)
+..++.|++ +|++.+..+++.+++|.++..++.++..
T Consensus 21 ~~~~llp~~~~pfls~~qk~y~~f~f~~iss~gwff~i 58 (401)
T PF06785_consen 21 VAAFLLPLVCYPFLSDSQKNYGYFVFSIISSLGWFFAI 58 (401)
T ss_pred HHHHHHHHhHhhhcCHHHHhcceeehHHHHHhHHHHHh
Confidence 345556664 4555556677788888888887766543
No 244
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=48.98 E-value=79 Score=21.17 Aligned_cols=48 Identities=8% Similarity=-0.047 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHH
Q 034783 10 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~ 57 (83)
-+..+++.+..-.+++++.+.+.+++.+ . +|.+...+++..+.+..+.
T Consensus 132 ~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~ 181 (395)
T COG2807 132 VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI 181 (395)
T ss_pred hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 3556778888888889999998888887 3 4666777776666665443
No 245
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=47.42 E-value=58 Score=19.13 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=25.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW 38 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~ 38 (83)
.|++.|.++.-++.....+.-.+..+...++.+.
T Consensus 25 lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~ 58 (183)
T PF03741_consen 25 LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSI 58 (183)
T ss_pred CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999988888777777777777776666653
No 246
>PF13974 YebO: YebO-like protein
Probab=46.35 E-value=13 Score=18.95 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhcccCCCCCHHH
Q 034783 48 WVICAAGVAFVTFLVPETKGRTLEE 72 (83)
Q Consensus 48 ~~~~~~~~~~~~~~~~et~~~~~~~ 72 (83)
.++.++.+++.|||+-....+..++
T Consensus 4 ~~~~~lv~livWFFVnRaSvRANEQ 28 (80)
T PF13974_consen 4 SVLVLLVGLIVWFFVNRASVRANEQ 28 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3445555566677776554444433
No 247
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=45.56 E-value=38 Score=16.53 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCHH
Q 034783 48 WVICAAGVAFVTFLVPETKGRTLE 71 (83)
Q Consensus 48 ~~~~~~~~~~~~~~~~et~~~~~~ 71 (83)
.+..+++++..+++-|+.-....+
T Consensus 6 l~Ga~~Ga~~glL~aP~sG~e~R~ 29 (74)
T PF12732_consen 6 LAGAAAGAAAGLLFAPKSGKETRE 29 (74)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHH
Confidence 334455556666777765443333
No 248
>COG1422 Predicted membrane protein [Function unknown]
Probab=43.13 E-value=75 Score=19.21 Aligned_cols=6 Identities=17% Similarity=-0.025 Sum_probs=2.2
Q ss_pred HHHHHH
Q 034783 44 FSIFWV 49 (83)
Q Consensus 44 ~~~~~~ 49 (83)
.++.++
T Consensus 50 ilV~av 55 (201)
T COG1422 50 ILVAAV 55 (201)
T ss_pred HHHHHH
Confidence 333333
No 249
>COG1288 Predicted membrane protein [Function unknown]
Probab=42.44 E-value=1e+02 Score=21.14 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-h------hhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783 18 IFIHHCINWTITFTFHFMME-W------SKTGTFSIFWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 68 (83)
+.++..++.+.|+......+ . +..+=...+.+...++..+.+++.++-|.+
T Consensus 187 t~iG~~~St~NPF~~~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya~Kvkkd 244 (481)
T COG1288 187 TQIGFAASTMNPFATVIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYASKVKKD 244 (481)
T ss_pred hccchhhhhcCchHHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445556666666554444 1 112223334445555556677776654433
No 250
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=41.34 E-value=1.1e+02 Score=20.57 Aligned_cols=46 Identities=4% Similarity=-0.141 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 034783 15 SLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 15 s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
|=.++-+.++-+++..+...+.+.+....+++-....++..++.+.
T Consensus 141 G~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 141 GRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHH
Confidence 4445666677777777778777744455666544444444444333
No 251
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=41.11 E-value=52 Score=16.77 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=14.6
Q ss_pred HHHHHhcccCCCCCHHHHHHHHhhc
Q 034783 56 AFVTFLVPETKGRTLEEIQASITKL 80 (83)
Q Consensus 56 ~~~~~~~~et~~~~~~~~~~~~~~~ 80 (83)
++...-=|.|+|.+..+....+++.
T Consensus 58 ~~Gii~DPTT~G~sDS~~al~y~~P 82 (84)
T PF04531_consen 58 ILGIINDPTTKGISDSEQALTYKKP 82 (84)
T ss_pred HheeeeCCCCCCCCcHHHHHhccCC
Confidence 3344445888888866544445443
No 252
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=40.81 E-value=1.4e+02 Score=21.66 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=7.4
Q ss_pred HHHHHhcccCCCCCHHH
Q 034783 56 AFVTFLVPETKGRTLEE 72 (83)
Q Consensus 56 ~~~~~~~~et~~~~~~~ 72 (83)
+..+.+.|-++.+..+.
T Consensus 308 l~~~~~~~~l~~~~~~~ 324 (709)
T COG2274 308 LITLIFQPLLRRKTRKL 324 (709)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445444444433
No 253
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=40.63 E-value=43 Score=15.75 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=8.5
Q ss_pred cccCCCCCHHHHHHHHhhc
Q 034783 62 VPETKGRTLEEIQASITKL 80 (83)
Q Consensus 62 ~~et~~~~~~~~~~~~~~~ 80 (83)
...+-=++.++-++.++++
T Consensus 26 ~kK~vi~Pie~ke~~~een 44 (54)
T PF11240_consen 26 FKKTVIEPIEEKEAKIEEN 44 (54)
T ss_pred HHHHhcCcHHHHHHHHHHH
Confidence 3444444555544444433
No 254
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.05 E-value=71 Score=18.03 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=12.7
Q ss_pred CCCCCcchHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLV 17 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~ 17 (83)
.|+||...|.+..+.+
T Consensus 52 kEivp~g~R~~i~~~~ 67 (136)
T KOG4111|consen 52 KEIVPQGRRSAIGATA 67 (136)
T ss_pred Hhhcchhhhhhhhhcc
Confidence 4899999998776655
No 255
>PF05298 Bombinin: Bombinin; InterPro: IPR007962 This family consists of Bombinin and Maximin proteins from Bombina maxima (Giant fire-bellied toad). Two groups of antimicrobial peptides have been isolated from skin secretions of B. maxima. Peptides in the first group, named maximins 1, 2, 3, 4 and 5, are structurally related to bombinin-like peptides (BLPs). Unlike BLPs, sequence variations in maximins occurred all through the molecules. In addition to the potent antimicrobial activity, cytotoxicity against tumour cells and spermicidal action of maximins, maximin 3 possessed a significant anti-Simian-Human immunodeficiency virus (HIV) activity. Maximins 1 and 3 have been found to be toxic to mice. Peptides in the second group, termed maximins H1, H2, H3 and H4, are homologous with bombinin H peptides [].; GO: 0042742 defense response to bacterium, 0005576 extracellular region; PDB: 2AP7_A.
Probab=39.60 E-value=9.7 Score=20.71 Aligned_cols=18 Identities=44% Similarity=0.455 Sum_probs=0.0
Q ss_pred cCCCCCHHHHHHHHhhcc
Q 034783 64 ETKGRTLEEIQASITKLS 81 (83)
Q Consensus 64 et~~~~~~~~~~~~~~~~ 81 (83)
||++-+.+|+.+.+.+.+
T Consensus 104 etrgfnqeeianlftkke 121 (141)
T PF05298_consen 104 ETRGFNQEEIANLFTKKE 121 (141)
T ss_dssp ------------------
T ss_pred HhcCCChhhhhhhhhhhh
Confidence 456666666666555443
No 256
>PHA03231 glycoprotein BALF4; Provisional
Probab=39.45 E-value=1.5e+02 Score=22.11 Aligned_cols=22 Identities=0% Similarity=-0.153 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034783 14 GSLVIFIHHCINWTITFTFHFM 35 (83)
Q Consensus 14 ~s~~~~~~~~~~~~~~~~~~~l 35 (83)
-+++..++.++++++..+.+.+
T Consensus 676 k~vg~vv~~v~ga~~SiVsG~~ 697 (829)
T PHA03231 676 KAVGNVVSGVAGAVGSIVSGVI 697 (829)
T ss_pred hhhhhhhhhHHHHHHHHHHHHH
Confidence 3455555555555555554433
No 257
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=39.07 E-value=71 Score=17.79 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 8 NMKGLAGSLVIFIHHCINWTITFTFHFM 35 (83)
Q Consensus 8 ~~R~~~~s~~~~~~~~~~~~~~~~~~~l 35 (83)
..+..--.++..+|.+.+++..+++.+.
T Consensus 71 ~~k~~~~qls~v~Nilvsv~~~~~~~~~ 98 (142)
T PF11712_consen 71 ELKSVKRQLSTVFNILVSVFAVFFAGWY 98 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666666653
No 258
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=38.03 E-value=51 Score=15.84 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=16.6
Q ss_pred CCCCc-chHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 3 EIFPI-NMKGLAGSLVIFIHHCINWTITFTF 32 (83)
Q Consensus 3 Elfp~-~~R~~~~s~~~~~~~~~~~~~~~~~ 32 (83)
|+... +-|-+..+.....+++....+....
T Consensus 2 ELiTN~dGrLSTT~~iQffg~lv~agil~~~ 32 (60)
T PF10841_consen 2 ELITNADGRLSTTAFIQFFGALVMAGILIYC 32 (60)
T ss_pred ccccCCCCcEehHHHHHHHHHHHHHHHHHhh
Confidence 44433 5566666766666666555444433
No 259
>COG3817 Predicted membrane protein [Function unknown]
Probab=37.93 E-value=1.1e+02 Score=19.53 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHH
Q 034783 40 KTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQA 75 (83)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~ 75 (83)
.+.++.-.++.+++..+...+..+++-....+|..+
T Consensus 124 knatl~al~i~~i~a~vla~~mt~~~p~~~~~E~~r 159 (313)
T COG3817 124 KNATLMALGIAAIVATVLACVMTKQTPKAAVQEARR 159 (313)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccChhhHHHHHHH
Confidence 355666777777777777666666666555555444
No 260
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=36.32 E-value=1e+02 Score=18.70 Aligned_cols=7 Identities=14% Similarity=0.116 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 034783 44 FSIFWVI 50 (83)
Q Consensus 44 ~~~~~~~ 50 (83)
++..+.+
T Consensus 32 ~l~~g~~ 38 (202)
T TIGR03513 32 MLFVGLI 38 (202)
T ss_pred HHHHHHH
Confidence 3333333
No 261
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=35.16 E-value=1.6e+02 Score=20.67 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=33.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVA 56 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 56 (83)
+|+++|+ ..+....+++++..+.+.++-+ .+.-..|..-.++.+++.+
T Consensus 81 ~ps~i~~----~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 81 YPSGVLA----LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA 129 (538)
T ss_pred CCchHHH----HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 4555554 4555667888889999999998 6665666665556666655
No 262
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=35.00 E-value=27 Score=17.75 Aligned_cols=16 Identities=13% Similarity=-0.195 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 034783 13 AGSLVIFIHHCINWTI 28 (83)
Q Consensus 13 ~~s~~~~~~~~~~~~~ 28 (83)
+..+.+.+.|.+.+..
T Consensus 12 ~l~l~yf~~W~~~ay~ 27 (80)
T PF06196_consen 12 GLTLIYFAWWYGFAYG 27 (80)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3444455555544433
No 263
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=34.29 E-value=1.2e+02 Score=21.82 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFM 35 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l 35 (83)
.|..+.+.+|.+.|+..++.|.++..+
T Consensus 125 rRT~~fc~vYf~aW~~dll~p~~~~~L 151 (642)
T PF11696_consen 125 RRTAAFCAVYFIAWLLDLLVPAFFAFL 151 (642)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666555554443
No 264
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=33.81 E-value=1.3e+02 Score=19.24 Aligned_cols=18 Identities=33% Similarity=0.673 Sum_probs=9.5
Q ss_pred cccCCC-CCHHHHHHHHhh
Q 034783 62 VPETKG-RTLEEIQASITK 79 (83)
Q Consensus 62 ~~et~~-~~~~~~~~~~~~ 79 (83)
+++.++ +..+|++++..+
T Consensus 154 ~~~~~~~eE~eEVe~el~~ 172 (294)
T KOG2881|consen 154 MSPSEGQEELEEVEAELAK 172 (294)
T ss_pred CCCccchhhHHHHHHHHHh
Confidence 555555 445666655543
No 265
>PRK02935 hypothetical protein; Provisional
Probab=33.70 E-value=84 Score=17.02 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034783 43 TFSIFWVICAAGVAFVTFL 61 (83)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~ 61 (83)
.|.+++.+.+++....+++
T Consensus 42 ifm~~G~l~~l~S~vvYFw 60 (110)
T PRK02935 42 IFMLLGFLAVIASTVVYFW 60 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444544
No 266
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=33.56 E-value=1.2e+02 Score=18.71 Aligned_cols=12 Identities=8% Similarity=-0.011 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHH
Q 034783 39 SKTGTFSIFWVI 50 (83)
Q Consensus 39 ~~~~~~~~~~~~ 50 (83)
+.++.+.+.++.
T Consensus 50 ~~~~~~~i~gi~ 61 (224)
T PF13829_consen 50 GSWWYWLIIGIL 61 (224)
T ss_pred ccHHHHHHHHHH
Confidence 334444444443
No 267
>PF10997 DUF2837: Protein of unknown function (DUF2837); InterPro: IPR021260 This bacterial family of proteins has no known function.
Probab=33.03 E-value=1.2e+02 Score=19.05 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 034783 8 NMKGLAGSLVIFIHHCINWTITFT 31 (83)
Q Consensus 8 ~~R~~~~s~~~~~~~~~~~~~~~~ 31 (83)
+.|.++...+..+|.+..++....
T Consensus 175 ~~r~Ta~~lSgiING~ATIllt~f 198 (254)
T PF10997_consen 175 EYRTTASQLSGIINGIATILLTIF 198 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666665555554
No 268
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=32.41 E-value=62 Score=15.09 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=7.2
Q ss_pred HHHhcccCCCCCHHHH
Q 034783 58 VTFLVPETKGRTLEEI 73 (83)
Q Consensus 58 ~~~~~~et~~~~~~~~ 73 (83)
+.....|-+..+.+-+
T Consensus 19 ~v~t~~eE~~~dq~~I 34 (52)
T PF14147_consen 19 AVKTAKEEREIDQEFI 34 (52)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3344555444444433
No 269
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=31.98 E-value=1.3e+02 Score=18.60 Aligned_cols=27 Identities=19% Similarity=0.248 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFMM 36 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~ 36 (83)
.+..-.++.+.++.+.+.+.|++ |+++
T Consensus 151 ~~p~~aAl~s~lsf~lG~liPLl-Py~~ 177 (241)
T cd02435 151 SRALISALTIGLSYFIGGLIPLL-PYFF 177 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34566777777777777777766 5554
No 270
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=31.95 E-value=1.2e+02 Score=20.99 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=35.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHH
Q 034783 4 IFPINMKGLAGSLVIFIHHCINWTITFTFHF-------MMEWSKTGTFSIFWVICAAGVAFVTF 60 (83)
Q Consensus 4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (83)
+-|++..+..+|+-...+..++.+...+.+. .........|+..+...++..+....
T Consensus 422 laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 422 LAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4577778888887777777777766666552 22233445666666666666655443
No 271
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=31.85 E-value=1.6e+02 Score=19.82 Aligned_cols=32 Identities=3% Similarity=-0.134 Sum_probs=24.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
|++.=.++.|.+....-++.++...+...+..
T Consensus 123 ~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 123 DKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677888888888888888877776666
No 272
>PRK10133 L-fucose transporter; Provisional
Probab=31.07 E-value=1.6e+02 Score=19.43 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHH
Q 034783 10 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWV 49 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~ 49 (83)
.+++.++.. ...+++.+.+.+...+.+ .+ ....|++...
T Consensus 380 ~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~ 420 (438)
T PRK10133 380 TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_pred hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345566554 345667777777777766 33 3455544333
No 273
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=30.41 E-value=63 Score=14.61 Aligned_cols=16 Identities=19% Similarity=-0.118 Sum_probs=7.9
Q ss_pred HHHHHHHHHhcccCCC
Q 034783 52 AAGVAFVTFLVPETKG 67 (83)
Q Consensus 52 ~~~~~~~~~~~~et~~ 67 (83)
+..+++.|.+.|..|.
T Consensus 22 ~Figiv~wa~~p~~k~ 37 (48)
T cd01324 22 FFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHhCCCcch
Confidence 3334455555665443
No 274
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=29.96 E-value=90 Score=16.51 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=9.0
Q ss_pred HHHHhcccCCCCCHHHHHHH
Q 034783 57 FVTFLVPETKGRTLEEIQAS 76 (83)
Q Consensus 57 ~~~~~~~et~~~~~~~~~~~ 76 (83)
+.||.+-+...+...+.++.
T Consensus 21 ifyFli~RPQrKr~K~~~~m 40 (97)
T COG1862 21 IFYFLIIRPQRKRMKEHQEL 40 (97)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34454544444444444443
No 275
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=29.34 E-value=1e+02 Score=16.80 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034783 10 KGLAGSLVIFIHHCINWTITFTF 32 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~~ 32 (83)
+.++.+.+..++.+..++...+.
T Consensus 55 ~~kAa~~af~v~l~~~~ii~l~~ 77 (118)
T PF12676_consen 55 VRKAASRAFFVALILLFIILLIS 77 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666556655555555544
No 276
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=29.18 E-value=51 Score=17.38 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 034783 48 WVICAAGVAFVTFLVPETKGRTLEEIQASI 77 (83)
Q Consensus 48 ~~~~~~~~~~~~~~~~et~~~~~~~~~~~~ 77 (83)
++..++..++.+-+..-....=++|++++.
T Consensus 65 ~i~alViaIY~YTfYSikQErFLdEiddEa 94 (108)
T KOG4782|consen 65 GIGALVIAIYGYTFYSIKQERFLDEIDDEA 94 (108)
T ss_pred HHHHHHHHhhhheeeehhHHHHHHHHHHHH
Confidence 334445455554333222222345665544
No 277
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=28.91 E-value=19 Score=23.16 Aligned_cols=59 Identities=10% Similarity=0.292 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHH--HHHHHHHHHHHHHHhcccCCCC
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSI--FWVICAAGVAFVTFLVPETKGR 68 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~et~~~ 68 (83)
+|.-+.|+-+....+.+++...++..+.- ...|++.+. |. ..++.+++.|.++.+++..
T Consensus 129 Lr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~W-L~LFlaiLIWlY~H~~~~~ 191 (381)
T PF05297_consen 129 LRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYW-LLLFLAILIWLYVHDQRHA 191 (381)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 34455555555554455544444333332 112222111 11 1233345566777776643
No 278
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=27.91 E-value=61 Score=18.26 Aligned_cols=8 Identities=0% Similarity=-0.251 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 034783 50 ICAAGVAF 57 (83)
Q Consensus 50 ~~~~~~~~ 57 (83)
+.++.+++
T Consensus 11 f~i~l~~l 18 (159)
T PRK09173 11 LVLFLALV 18 (159)
T ss_pred HHHHHHHH
Confidence 33333333
No 279
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.93 E-value=1.8e+02 Score=18.29 Aligned_cols=24 Identities=4% Similarity=-0.281 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTF 32 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~ 32 (83)
.|..++|....+..+..++....+
T Consensus 13 ~k~~~~G~~vl~ta~la~~s~~~a 36 (301)
T PF14362_consen 13 NKYAGIGAAVLFTALLAGLSGGYA 36 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544444444444444443
No 280
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=25.74 E-value=1.7e+02 Score=18.12 Aligned_cols=7 Identities=0% Similarity=0.050 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 034783 12 LAGSLVI 18 (83)
Q Consensus 12 ~~~s~~~ 18 (83)
..+++..
T Consensus 120 ~l~~~~~ 126 (232)
T TIGR00869 120 YLIVILV 126 (232)
T ss_pred HHHHHHH
Confidence 3334333
No 281
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=24.77 E-value=88 Score=14.40 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=10.5
Q ss_pred HHHHHhcccCCCCCHHHHHHH
Q 034783 56 AFVTFLVPETKGRTLEEIQAS 76 (83)
Q Consensus 56 ~~~~~~~~et~~~~~~~~~~~ 76 (83)
++..+++...-.++++++.+.
T Consensus 13 ~~~~~~~~~~i~~pl~~l~~~ 33 (70)
T PF00672_consen 13 LLLAWLLARRITRPLRRLSDA 33 (70)
T ss_dssp HHHHHH--HTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666665543
No 282
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=24.15 E-value=1.1e+02 Score=15.31 Aligned_cols=8 Identities=0% Similarity=0.077 Sum_probs=3.6
Q ss_pred HHHHHhcc
Q 034783 56 AFVTFLVP 63 (83)
Q Consensus 56 ~~~~~~~~ 63 (83)
++++++++
T Consensus 63 ~l~flYLK 70 (72)
T PF12575_consen 63 LLTFLYLK 70 (72)
T ss_pred HHHHHHhc
Confidence 34445554
No 283
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=24.01 E-value=2e+02 Score=18.18 Aligned_cols=9 Identities=11% Similarity=-0.112 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 034783 9 MKGLAGSLV 17 (83)
Q Consensus 9 ~R~~~~s~~ 17 (83)
-|.++..+.
T Consensus 194 aRkR~i~f~ 202 (256)
T PF09788_consen 194 ARKRAIIFF 202 (256)
T ss_pred hhhHHHHHH
Confidence 344444433
No 284
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=23.99 E-value=1.3e+02 Score=20.84 Aligned_cols=28 Identities=18% Similarity=-0.088 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCHHHHHH
Q 034783 48 WVICAAGVAFVTFLVPETKGRTLEEIQA 75 (83)
Q Consensus 48 ~~~~~~~~~~~~~~~~et~~~~~~~~~~ 75 (83)
++.+.+.+++......|-|.+..|+.|+
T Consensus 570 gvC~~il~ii~~Lh~~EKkeD~~Er~Qe 597 (606)
T KOG4550|consen 570 GVCVFILAIIGILHWQEKKEDDRERRQE 597 (606)
T ss_pred HHHHHHHHHHhheehhhhhhhhHHHHhh
Confidence 3344444555666678877777766554
No 285
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=23.91 E-value=1.8e+02 Score=17.65 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 9 MKGLAGSLVIFIHHCINWTITFTFHFMM 36 (83)
Q Consensus 9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~ 36 (83)
.+..-.++.+.+..+.+.+.|.+ |+++
T Consensus 134 ~~p~~aal~s~~sf~lg~liPll-py~~ 160 (218)
T cd02432 134 ANPWQAALASAISFSVGALLPLL-AILL 160 (218)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 35667788888888888888877 5544
No 286
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=23.51 E-value=1.9e+02 Score=17.81 Aligned_cols=23 Identities=0% Similarity=-0.119 Sum_probs=9.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGSLVIFIHHCINWTIT 29 (83)
Q Consensus 7 ~~~R~~~~s~~~~~~~~~~~~~~ 29 (83)
.+.....+++...++.++.++-|
T Consensus 107 ~~~~~~l~~~~~~~~v~a~~lFP 129 (224)
T PF03839_consen 107 SPLMQYLIGALLLVGVIAICLFP 129 (224)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444333333
No 287
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=23.38 E-value=1.8e+02 Score=17.56 Aligned_cols=12 Identities=8% Similarity=-0.089 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 034783 42 GTFSIFWVICAA 53 (83)
Q Consensus 42 ~~~~~~~~~~~~ 53 (83)
..|.+..+.+.+
T Consensus 130 ~~YlllLvgGli 141 (239)
T PF13105_consen 130 YLYLLLLVGGLI 141 (239)
T ss_pred HHHHHHHHHHHH
Confidence 334444333333
No 288
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.28 E-value=1.1e+02 Score=15.18 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 034783 24 INWTITFTFHFMMEWSKTGTFSIFWVICAAGVAF 57 (83)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 57 (83)
.++++.++.+++.+.. ...+..+++..++..++
T Consensus 19 ~~~iisfi~Gy~~q~~-~~~~~~~~~g~~~~~lv 51 (76)
T PF06645_consen 19 ISAIISFIVGYITQSF-SYTFYIYGAGVVLTLLV 51 (76)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 3445555556665522 23444444444444333
No 289
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=23.09 E-value=91 Score=17.73 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=12.6
Q ss_pred HHHHHhcccCCCCCHHHHHHH
Q 034783 56 AFVTFLVPETKGRTLEEIQAS 76 (83)
Q Consensus 56 ~~~~~~~~et~~~~~~~~~~~ 76 (83)
++..+++..|..++-..++..
T Consensus 59 ~l~v~liQNtq~rD~aai~aK 79 (141)
T COG5478 59 FLMVVLIQNTQNRDTAAIQAK 79 (141)
T ss_pred HHHHhheeccccccHHHHHHH
Confidence 344566777777776555443
No 290
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=23.04 E-value=49 Score=18.36 Aligned_cols=16 Identities=44% Similarity=0.626 Sum_probs=10.0
Q ss_pred cCCCCCHHHHHHHHhh
Q 034783 64 ETKGRTLEEIQASITK 79 (83)
Q Consensus 64 et~~~~~~~~~~~~~~ 79 (83)
|.||.+.+|+++.+++
T Consensus 31 ~sKGLt~~EI~~al~~ 46 (136)
T PF04695_consen 31 ESKGLTEEEIDEALGR 46 (136)
T ss_dssp HHCT--HHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHh
Confidence 4578888888877654
No 291
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=22.91 E-value=25 Score=24.08 Aligned_cols=36 Identities=6% Similarity=-0.058 Sum_probs=27.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+|+..++..+...++....+-.+..++|.....+..
T Consensus 414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 466677777777777777778888888888777777
No 292
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=22.28 E-value=1.6e+02 Score=18.06 Aligned_cols=6 Identities=0% Similarity=0.252 Sum_probs=2.2
Q ss_pred HHHHHH
Q 034783 55 VAFVTF 60 (83)
Q Consensus 55 ~~~~~~ 60 (83)
+++.++
T Consensus 241 Fi~mvl 246 (251)
T PF09753_consen 241 FIMMVL 246 (251)
T ss_pred HHHHHH
Confidence 333333
No 293
>PHA02692 hypothetical protein; Provisional
Probab=22.18 E-value=1.2e+02 Score=15.07 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=3.3
Q ss_pred HHHHHHhc
Q 034783 55 VAFVTFLV 62 (83)
Q Consensus 55 ~~~~~~~~ 62 (83)
.++.++++
T Consensus 60 vll~flYL 67 (70)
T PHA02692 60 VLLCFHYL 67 (70)
T ss_pred HHHHHHHH
Confidence 33444444
No 294
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=21.87 E-value=1.7e+02 Score=16.67 Aligned_cols=22 Identities=0% Similarity=-0.345 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034783 10 KGLAGSLVIFIHHCINWTITFT 31 (83)
Q Consensus 10 R~~~~s~~~~~~~~~~~~~~~~ 31 (83)
...+.++.+....+.+.+.|.+
T Consensus 39 G~~slai~Y~~~~~s~l~~P~i 60 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSI 60 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHH
Confidence 3445555555555555554443
No 295
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=21.59 E-value=2.3e+02 Score=17.99 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783 38 WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 69 (83)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 69 (83)
.+....|.+.=.-.++..+...++++|.|++.
T Consensus 219 ~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 219 NGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred ccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 34444455544455666777778899987663
No 296
>COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]
Probab=20.88 E-value=2.1e+02 Score=19.08 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=21.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHH
Q 034783 3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFW 48 (83)
Q Consensus 3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~ 48 (83)
|++|...-.--.-++..+..+.+.+..+.+.+-.+ .+..|.++.++
T Consensus 39 ~viP~~mAPNliTL~Gl~fiv~nvlt~l~ydp~~~~~~~~w~yfs~a 85 (384)
T COG5050 39 RVIPYWMAPNLITLCGLIFIVANVLTTLYYDPCLSVDGPRWTYFSYA 85 (384)
T ss_pred HHcccccCchHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHH
Confidence 34555544444444444445555555555444444 23244444443
No 297
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=20.76 E-value=1.5e+02 Score=15.70 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783 15 SLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 65 (83)
Q Consensus 15 s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 65 (83)
-+....+.+.+.+..+...++...+ .+....++.......++..+.+.+.
T Consensus 18 Yl~~faGgll~~~il~~iLYi~Gv~-~~ici~~~~~~~~~lv~~~f~ln~k 67 (96)
T PF13571_consen 18 YLFYFAGGLLGLFILFVILYIAGVN-QWICIGFGVVSGSLLVWQTFRLNRK 67 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHhhhhheeeeecccc
Confidence 3344444444444444333333211 2333334444333333333444443
No 298
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=20.64 E-value=3e+02 Score=19.00 Aligned_cols=31 Identities=6% Similarity=-0.055 Sum_probs=21.2
Q ss_pred cchHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGS--LVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 7 ~~~R~~~~s--~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+..|..|.. .......++.++..++.+.++.
T Consensus 363 TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 363 TGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666644 4466678888888888777765
No 299
>PHA02844 putative transmembrane protein; Provisional
Probab=20.54 E-value=1.4e+02 Score=15.07 Aligned_cols=8 Identities=0% Similarity=0.031 Sum_probs=3.6
Q ss_pred HHHHHhcc
Q 034783 56 AFVTFLVP 63 (83)
Q Consensus 56 ~~~~~~~~ 63 (83)
++.+++++
T Consensus 63 ~~~flYLK 70 (75)
T PHA02844 63 FLTFLYLK 70 (75)
T ss_pred HHHHHHHh
Confidence 34444454
No 300
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=20.29 E-value=3.1e+02 Score=18.98 Aligned_cols=36 Identities=8% Similarity=-0.193 Sum_probs=25.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
.|+++.+.-.+-.++....++++..+...+...+.+
T Consensus 170 N~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 170 NEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777788888888888877777665555
No 301
>PF00606 Glycoprotein_B: Herpesvirus Glycoprotein B; InterPro: IPR000234 This family of proteins are the surface glycoprotein of various herpesviruses. The glycoprotein is anchored to the lipid envelope of the virus by a transmembrane region.; GO: 0016020 membrane; PDB: 3FVC_A 2GUM_B 3NWF_B 3NW8_C 3NWA_B 3NWD_D.
Probab=20.26 E-value=34 Score=24.62 Aligned_cols=22 Identities=0% Similarity=-0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034783 12 LAGSLVIFIHHCINWTITFTFH 33 (83)
Q Consensus 12 ~~~s~~~~~~~~~~~~~~~~~~ 33 (83)
.|-+++..++.++++++..+.+
T Consensus 638 ~Gk~vg~vv~~v~g~~~s~VsG 659 (713)
T PF00606_consen 638 VGKAVGNVVSGVGGAFGSIVSG 659 (713)
T ss_dssp ----------------------
T ss_pred hchhhhhhhHHHHHHHHHHHHH
Confidence 3444455555555555555443
No 302
>PRK13499 rhamnose-proton symporter; Provisional
Probab=20.09 E-value=2.7e+02 Score=18.33 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783 7 INMKGLAGSLVIFIHHCINWTITFTFHFMME 37 (83)
Q Consensus 7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~ 37 (83)
+..|..++|.+.-++-..+.+...+.|.+..
T Consensus 92 ~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~ 122 (345)
T PRK13499 92 LTMRYLGMSLGIGIAIGITLIVGTLMPPIIN 122 (345)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHc
Confidence 4567777787777776666666666666663
No 303
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=20.08 E-value=2.6e+02 Score=18.09 Aligned_cols=49 Identities=10% Similarity=-0.135 Sum_probs=32.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 034783 5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAG 54 (83)
Q Consensus 5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 54 (83)
.|++.|.++.-++.....+.-++.......+.+. .++...++++..+..
T Consensus 92 vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~-f~wi~~ifG~fLi~~ 140 (302)
T TIGR03718 92 VPREYQHRVLFWGILGALVLRAIFIALGAALIEQ-FHWVLYIFGAFLLYT 140 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 4888999998888877777777777776666652 234555555544443
Done!